genome.fa.s15.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  164  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51558247--51558450	65	3.2	67	79	14	216	48	4	3	42	1.43
51558356--51558457	17	6.2	17	70	16	56	51	3	0	43	1.26
51562060--51562119	11	5.0	11	79	16	66	40	6	1	51	1.38
51562061--51562113	26	2.0	26	92	0	88	41	5	1	50	1.36
51562648--51562681	3	11.3	3	100	0	68	64	0	0	35	0.94
51563350--51563411	22	2.7	23	92	5	99	50	1	0	48	1.10
51563335--51563376	16	2.6	16	96	0	75	50	4	0	45	1.23
51568510--51568547	19	2.0	20	89	5	60	68	2	0	28	1.03
51568514--51568542	15	1.9	15	100	0	58	68	3	0	27	1.05
51568985--51569043	28	2.0	30	81	15	70	45	1	22	30	1.62
51569460--51569525	20	3.3	20	64	8	53	13	31	21	33	1.92
51569443--51569667	40	5.6	40	85	0	306	19	30	18	32	1.96
51569446--51569667	120	1.9	120	90	1	356	19	30	18	31	1.96
51573572--51573634	20	3.2	20	74	0	63	38	20	20	20	1.94
51575221--51575253	16	2.1	16	100	0	66	36	6	33	24	1.80
51575272--51575378	44	2.4	44	100	0	214	29	3	27	39	1.74
51575539--51575591	18	3.1	17	84	10	56	52	3	0	43	1.19
51583081--51583135	24	2.2	26	81	12	71	45	0	1	52	1.11
51583273--51583367	45	2.1	45	88	1	138	32	27	5	34	1.79
51583346--51583383	16	2.4	16	90	0	58	34	34	0	31	1.58
51592126--51592173	18	2.5	19	80	10	53	75	6	4	14	1.16
51594141--51594457	87	3.6	86	73	9	311	26	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51594167--51594802	44	14.8	43	71	9	232	27	21	19	31	1.98
51594380--51594849	169	2.8	169	94	1	798	27	21	19	31	1.97
51594172--51594845	46	15.6	45	71	14	279	27	21	19	31	1.97
51606881--51606929	19	2.5	19	80	3	53	75	6	4	14	1.14
51607210--51607240	15	2.1	15	93	0	53	64	0	0	35	0.94
51607369--51607405	4	9.5	4	83	16	51	70	0	0	29	0.88
51608698--51608773	40	1.9	40	81	5	91	21	27	27	23	1.99
51610538--51610596	25	2.4	24	73	15	59	67	1	0	30	1.00
51610636--51610660	13	1.9	13	100	0	50	64	0	12	24	1.27
51610635--51610682	21	2.2	22	92	3	80	66	0	8	25	1.19
51610634--51610703	33	2.1	33	89	7	106	67	0	7	25	1.16
51610634--51610683	22	2.3	23	86	10	77	68	0	8	24	1.16
51610634--51610694	12	5.2	12	77	18	67	67	0	6	26	1.15
51623658--51623727	35	2.0	35	100	0	140	28	17	8	45	1.77
51647272--51647384	42	2.7	42	83	2	120	15	20	19	44	1.87
51662632--51662740	27	4.0	27	87	7	159	22	19	21	36	1.95
51675515--51675702	59	3.2	59	72	19	199	43	0	3	52	1.23
51675574--51675764	61	3.2	61	71	11	212	43	1	4	50	1.32
51675514--51675799	120	2.4	119	94	2	500	44	1	4	50	1.28
51675551--51675734	59	3.1	59	70	12	194	41	1	4	51	1.33
51675578--51675761	59	3.1	58	69	20	180	43	1	4	50	1.33
51675745--51675793	15	2.9	18	80	20	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51675736--51675814	27	2.9	27	77	11	79	46	0	3	49	1.19
51675936--51676032	45	2.2	45	85	5	126	34	27	5	32	1.79
51676012--51676044	16	2.1	16	100	0	66	21	36	6	36	1.78
51679855--51679881	14	1.9	14	100	0	54	18	37	14	29	1.91
51681484--51681533	3	17.0	3	91	4	84	30	0	2	68	1.01
51683921--51683983	30	2.2	29	85	5	83	38	9	19	33	1.84
51684222--51684414	51	3.8	51	80	5	180	24	16	27	32	1.96
51684327--51684407	26	3.2	26	65	28	73	23	13	28	34	1.93
51684222--51684405	102	1.8	102	89	4	293	23	16	27	32	1.96
51684414--51684502	45	2.0	45	95	0	160	24	17	24	32	1.97
51705830--51705888	29	2.0	29	100	0	118	32	16	27	23	1.96
51706878--51707323	44	9.7	43	71	14	207	35	16	17	30	1.93
51707009--51707323	44	6.6	51	73	14	253	35	16	17	30	1.92
51706878--51707323	95	4.8	95	82	4	455	35	16	17	30	1.93
51708347--51708397	25	2.0	27	85	14	72	50	1	13	33	1.53
51709115--51709157	3	14.7	3	82	4	52	27	2	2	67	1.15
51710642--51710795	60	2.6	59	83	3	184	30	13	23	32	1.93
51710801--51710968	61	2.8	61	89	0	255	31	14	27	26	1.95
51713127--51713164	20	1.9	20	94	0	67	47	0	5	47	1.24
51714620--51714659	21	1.9	21	89	0	62	42	2	2	52	1.28
51728527--51728632	41	2.6	41	95	0	185	21	21	25	31	1.98
51739297--51739447	28	5.4	28	91	1	214	33	28	12	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51754694--51754942	125	2.0	125	95	0	453	32	19	20	26	1.97
51758535--51758593	29	2.1	28	84	12	77	59	1	3	35	1.24
51758598--51758642	11	4.2	11	91	2	74	46	0	28	24	1.53
51758601--51758642	10	4.0	10	84	9	57	45	0	30	23	1.53
51759660--51759733	25	3.0	25	92	2	123	54	0	1	44	1.08
51760296--51760555	79	3.3	78	81	9	296	18	36	3	41	1.67
51761119--51761149	13	2.4	13	94	0	53	45	0	12	41	1.42
51761158--51761183	12	2.2	12	100	0	52	11	0	15	73	1.11
51762897--51762952	24	2.5	22	77	13	60	25	3	5	66	1.29
51762897--51762959	25	2.7	23	80	9	76	26	3	4	65	1.28
51763577--51763646	35	2.0	35	94	0	122	44	10	4	41	1.57
51775623--51776451	415	2.0	418	95	0	1502	37	12	17	32	1.87
51777048--51777096	25	2.0	24	96	4	89	36	2	0	61	1.08
51777823--51778100	139	2.0	139	96	0	511	39	16	20	22	1.92
51782298--51782393	38	2.5	38	86	3	131	32	19	13	34	1.91
51783695--51784229	269	2.0	269	84	2	698	31	17	25	25	1.97
51784863--51784914	26	2.0	25	85	3	68	46	0	3	50	1.20
51784873--51784924	27	2.0	26	85	11	70	48	0	1	50	1.12
51787004--51787130	61	2.1	62	82	4	159	40	4	14	40	1.68
51790393--51790426	12	2.8	12	90	4	50	85	0	14	0	0.60
51790393--51790426	13	2.6	13	90	0	50	85	0	14	0	0.60
51793862--51793969	57	1.9	57	92	0	180	32	13	17	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51794608--51794646	18	2.2	18	100	0	78	30	23	5	41	1.76
51794709--51794767	22	2.8	20	78	14	64	42	1	1	54	1.20
51795003--51795067	28	2.4	26	74	5	67	66	13	1	18	1.33
51795003--51795068	27	2.4	28	77	5	73	65	13	1	19	1.35
51795722--51795757	15	2.3	16	90	4	56	36	0	0	63	0.94
51803160--51803439	46	6.6	44	85	10	299	29	21	13	35	1.92
51803295--51803403	36	3.0	36	97	0	200	29	20	12	37	1.90
51809058--51809215	33	4.8	32	70	8	91	32	16	22	28	1.96
51808991--51809230	101	2.4	101	91	0	381	32	16	22	27	1.95
51812408--51812454	21	2.3	20	78	10	51	57	2	0	40	1.11
51819453--51819583	64	2.0	64	98	0	253	27	17	15	39	1.90
51822696--51822720	11	2.3	11	100	0	50	20	0	32	48	1.50
51827041--51827101	21	2.9	22	82	4	63	22	21	37	18	1.94
51832902--51832957	25	2.2	25	90	0	85	42	5	8	42	1.59
51834501--51834588	36	2.5	35	77	5	88	55	5	7	30	1.52
51834696--51834739	6	7.5	6	92	2	54	72	9	0	18	1.10
51834696--51834752	12	4.9	12	80	4	64	71	7	0	21	1.08
51835466--51835550	44	2.0	43	90	2	134	27	25	17	29	1.98
51835594--51835699	50	2.1	50	84	3	133	28	25	19	26	1.99
51848189--51848254	3	22.3	3	75	9	64	66	4	0	28	1.11
51848189--51848253	24	2.6	25	85	9	87	66	4	0	29	1.12
51849857--51849905	24	2.0	24	96	0	89	16	18	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51851679--51851862	40	4.6	39	81	8	169	25	26	22	25	2.00
51860991--51861169	40	4.6	39	78	10	170	25	25	22	26	2.00
51860972--51861173	40	5.1	38	76	14	144	25	25	22	26	2.00
51876308--51876458	28	5.4	28	91	1	214	33	28	12	25	1.92
51883380--51883409	16	1.9	16	93	6	53	50	20	0	30	1.49
51884489--51884557	25	2.8	25	95	0	120	30	21	24	23	1.99
51886028--51886112	28	3.0	28	74	8	91	36	20	18	24	1.95
51887388--51887415	8	3.5	8	100	0	56	14	25	10	50	1.75
51900698--51900731	16	2.1	16	94	0	59	29	8	23	38	1.85
51905063--51905156	29	3.2	29	72	4	73	26	17	17	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216