genome.fa.s15.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  177  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55372603--55372644	17	2.4	18	80	4	50	45	9	2	42	1.49
55375667--55376007	126	2.7	124	89	4	517	33	22	15	29	1.94
55378723--55378792	22	3.1	23	77	8	72	15	11	12	60	1.60
55385159--55385195	17	2.2	17	100	0	74	40	18	5	35	1.74
55390775--55390831	29	2.0	28	82	3	69	31	5	8	54	1.53
55393538--55393577	15	2.6	16	80	15	57	7	7	5	80	1.03
55393671--55393718	23	2.1	24	92	7	82	39	0	0	60	0.97
55393671--55393751	36	2.4	34	87	6	110	39	0	0	60	0.97
55393694--55393729	14	2.4	16	86	13	51	38	0	0	61	0.96
55393672--55393783	21	5.5	20	74	22	92	41	0	0	58	0.98
55393709--55393783	21	3.5	22	83	10	93	41	0	0	58	0.98
55393677--55393803	55	2.3	54	84	10	150	43	0	0	56	0.99
55393825--55393881	22	2.6	21	83	13	62	38	0	1	59	1.08
55393842--55393883	21	2.1	20	86	8	59	40	0	0	59	0.97
55393861--55393902	16	2.6	17	89	10	63	38	0	0	61	0.96
55393892--55393939	21	2.3	21	85	7	62	39	0	4	56	1.19
55393890--55393947	31	1.9	29	86	6	80	39	0	3	56	1.16
55403325--55403402	21	3.8	20	68	13	61	24	11	11	52	1.70
55403332--55403410	40	2.0	39	90	2	122	29	11	11	48	1.74
55403435--55403476	21	2.0	21	90	0	66	21	11	11	54	1.68
55403376--55403514	70	2.0	70	91	2	226	33	11	14	41	1.82
55403803--55403844	19	2.3	19	87	4	59	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55403835--55403870	19	1.9	19	88	5	56	38	2	5	52	1.39
55403835--55403883	19	2.7	18	84	9	55	40	2	4	53	1.32
55403840--55403896	19	2.9	21	82	12	59	43	3	3	49	1.36
55409372--55409452	25	3.3	24	77	5	90	17	29	22	30	1.96
55410339--55410431	42	2.2	42	92	0	150	19	27	32	20	1.97
55410339--55410444	42	2.5	42	85	0	149	18	27	33	20	1.96
55411302--55411548	42	5.8	41	78	6	174	27	18	19	34	1.95
55411434--55411565	44	3.0	44	75	6	144	31	20	16	31	1.95
55411894--55411944	21	2.4	21	90	0	75	3	47	15	33	1.64
55417438--55417474	7	5.0	7	87	12	56	29	0	16	54	1.43
55417543--55417625	25	3.2	24	80	8	76	33	3	19	43	1.68
55417593--55417751	9	17.1	9	72	13	99	32	0	15	52	1.47
55417579--55417733	27	5.6	27	85	7	211	30	1	16	50	1.55
55417582--55417751	18	9.2	18	74	10	128	31	1	15	51	1.54
55422396--55422935	115	4.7	113	78	7	538	25	23	20	31	1.98
55422396--55422936	229	2.4	227	81	5	642	25	23	19	31	1.98
55422396--55423006	229	2.7	227	79	7	619	25	23	19	30	1.98
55425943--55426054	50	2.3	46	75	12	116	35	1	6	56	1.35
55430748--55431057	110	2.8	110	88	2	430	34	19	16	29	1.94
55431097--55431140	21	2.1	22	87	8	65	54	2	13	29	1.51
55431331--55431377	12	3.9	12	75	10	51	42	6	8	42	1.60
55447546--55447632	45	1.9	45	88	0	129	44	11	19	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55458368--55458399	13	2.5	13	94	0	55	46	6	3	43	1.44
55459392--55459475	41	2.0	41	100	0	168	22	9	23	44	1.82
55461375--55461476	51	2.0	51	100	0	204	31	21	13	33	1.92
55464791--55464867	41	1.9	41	86	2	111	27	15	25	31	1.96
55464774--55465037	114	2.3	114	77	5	275	24	20	26	29	1.99
55465429--55465471	17	2.9	15	81	18	54	25	0	27	46	1.53
55466541--55466888	146	2.4	146	80	6	357	27	14	20	36	1.93
55469186--55469233	21	2.3	21	92	0	78	37	18	41	2	1.63
55469682--55469888	85	2.5	84	83	7	251	27	23	20	28	1.99
55469682--55469891	42	5.0	42	86	5	257	27	23	20	29	1.99
55476920--55476964	18	2.5	18	100	0	90	22	17	4	55	1.60
55484145--55484193	23	2.3	20	79	10	53	42	4	2	51	1.32
55489179--55489230	20	2.8	18	76	21	54	51	5	1	40	1.37
55490583--55490615	5	6.6	5	100	0	66	0	18	0	81	0.68
55491066--55491104	21	1.9	21	89	5	62	23	10	0	66	1.22
55498174--55498212	20	2.0	20	89	0	60	35	30	20	12	1.90
55498299--55498887	276	2.1	276	82	3	711	31	23	16	28	1.96
55498307--55498973	138	4.8	139	78	4	580	31	23	16	27	1.96
55499115--55499162	18	2.7	18	83	3	62	39	20	6	33	1.78
55516077--55516141	25	2.5	25	90	5	94	27	4	7	60	1.44
55516078--55516164	25	3.3	26	84	7	79	28	6	5	58	1.47
55531688--55531807	44	2.7	44	84	3	125	36	17	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55531776--55531990	115	1.9	116	84	4	292	33	15	22	27	1.95
55531881--55532085	94	2.2	94	82	3	252	31	17	22	29	1.96
55539447--55539612	42	3.9	42	87	1	215	30	22	20	27	1.98
55540023--55540100	12	7.0	12	68	16	51	5	38	16	39	1.71
55540017--55540100	33	2.5	33	88	0	132	5	39	15	39	1.72
55540065--55540133	21	3.3	21	85	0	93	2	40	18	37	1.66
55541815--55541895	20	4.2	20	74	15	89	39	4	4	50	1.46
55543489--55543571	27	3.1	27	63	13	73	33	18	4	43	1.71
55543481--55543586	52	2.0	52	100	0	212	32	18	5	43	1.74
55543495--55543577	25	3.2	26	63	13	71	32	21	4	40	1.74
55544881--55544905	11	2.3	11	100	0	50	48	0	0	52	1.00
55545498--55545591	21	4.6	21	73	15	54	38	38	2	21	1.65
55545533--55545564	17	1.9	16	93	6	55	34	43	0	21	1.53
55545508--55545585	38	2.0	39	95	2	140	38	38	2	20	1.66
55545809--55545992	98	1.9	98	94	1	325	25	24	21	29	1.99
55546031--55546177	72	2.0	73	86	3	208	27	23	19	28	1.99
55546031--55546201	72	2.4	72	81	4	193	29	24	18	26	1.98
55545913--55546308	185	2.1	187	88	0	598	29	25	20	25	1.99
55546104--55546539	113	3.9	112	83	5	549	28	25	20	25	1.99
55546100--55546540	227	1.9	226	93	2	760	28	25	20	25	1.99
55546449--55546612	71	2.3	72	86	5	215	26	26	21	25	1.99
55546322--55546701	185	2.0	186	87	3	543	26	24	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55557032--55557072	21	2.0	21	85	0	55	65	2	0	31	1.05
55561502--55561587	43	2.0	43	88	4	129	37	9	4	48	1.56
55561851--55561884	16	2.1	16	88	0	50	17	14	8	58	1.61
55568189--55568250	30	2.1	30	96	0	115	30	9	30	29	1.89
55572518--55572605	44	2.0	44	86	0	122	46	4	9	39	1.56
55573565--55573628	28	2.3	27	83	5	74	62	1	1	34	1.14
55573634--55573691	9	6.3	9	76	15	57	72	1	3	22	1.09
55573656--55573692	16	2.3	15	86	13	56	75	0	2	21	0.92
55573948--55574002	19	2.8	19	78	13	58	32	3	3	60	1.32
55573987--55574027	19	2.2	18	86	4	55	19	4	2	73	1.13
55573994--55574037	18	2.4	18	85	11	54	20	2	2	75	1.03
55575557--55575592	8	4.6	8	86	6	56	50	0	0	50	1.00
55575562--55575590	15	1.9	15	100	0	58	58	0	0	41	0.98
55576255--55576388	66	2.0	65	82	5	162	11	26	19	41	1.86
55582637--55582706	32	2.1	35	84	7	92	48	8	17	25	1.75
55586903--55586938	16	2.2	16	100	0	72	25	0	36	38	1.56
55587175--55587209	18	2.0	17	88	5	52	54	0	0	45	0.99
55587133--55587205	27	2.7	27	76	8	76	52	2	0	45	1.15
55587322--55587356	18	2.0	17	88	5	52	54	0	0	45	0.99
55587094--55587368	147	1.9	149	96	1	509	46	3	2	47	1.33
55587342--55587520	55	3.1	54	64	22	128	49	7	2	41	1.43
55587442--55587476	18	2.0	17	88	5	52	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55587552--55587583	16	1.9	17	93	6	57	46	0	0	53	1.00
55587305--55587597	120	2.4	120	92	2	482	50	5	2	42	1.36
55589292--55589338	19	2.4	19	96	3	85	44	21	4	29	1.71
55589346--55589438	41	2.2	41	98	1	177	39	33	2	24	1.67
55590065--55590099	14	2.4	14	95	4	61	65	0	25	8	1.21
55590075--55590119	19	2.5	18	82	17	58	66	0	26	6	1.16
55596582--55596621	19	2.1	19	85	0	53	65	2	0	32	1.06
55596890--55596960	19	3.8	19	74	17	69	53	1	2	42	1.24
55597233--55597326	29	3.2	29	67	8	82	28	10	18	42	1.83
55597199--55597328	59	2.2	60	90	5	203	29	11	18	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216