genome.fa.s15.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  138  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43751151--43751307	81	1.9	80	82	7	192	23	15	28	33	1.95
43754952--43755025	30	2.4	30	86	6	96	48	2	0	48	1.15
43767020--43767315	97	2.9	100	79	8	332	43	1	13	41	1.52
43767163--43767209	22	2.2	21	85	11	60	48	0	2	48	1.13
43767111--43767323	106	2.0	105	81	4	250	41	0	13	44	1.49
43768793--43768870	26	2.9	26	73	17	70	53	0	2	43	1.14
43770266--43770307	20	2.1	20	82	8	50	47	0	4	47	1.23
43776300--43776338	11	3.5	11	82	0	51	35	7	0	56	1.28
43785435--43785697	40	6.6	40	87	3	316	26	28	20	24	1.99
43788883--43788928	23	2.0	23	86	0	65	13	10	28	47	1.76
43795329--43795369	21	2.0	20	85	4	55	46	0	7	46	1.30
43806612--43806646	18	1.9	18	94	0	61	20	5	20	54	1.64
43816848--43816872	4	6.2	4	100	0	50	76	0	0	24	0.80
43817767--43817799	17	1.9	18	88	11	52	42	9	0	48	1.35
43821492--43821553	22	2.8	22	87	4	81	46	6	6	40	1.55
43821714--43821742	14	2.0	15	93	6	51	31	0	0	68	0.89
43827017--43828745	247	7.0	247	95	0	3007	38	15	10	35	1.82
43829450--43829502	20	2.5	20	81	6	61	22	22	22	32	1.98
43831686--43831724	20	1.9	21	89	5	62	28	15	7	48	1.72
43833034--43833070	17	2.1	18	90	5	58	27	0	16	56	1.40
43833184--43833266	41	2.0	41	97	0	157	48	13	12	26	1.77
43838771--43838808	17	2.2	17	95	0	67	57	13	0	28	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43839765--43839811	24	2.0	24	82	0	58	17	29	8	44	1.78
43839803--43839829	9	3.0	9	100	0	54	33	33	0	33	1.58
43840387--43840449	20	3.2	20	65	17	60	49	7	19	23	1.74
43849689--43849820	17	7.8	17	69	16	62	15	20	32	31	1.93
43849833--43849918	17	4.7	17	78	16	91	12	24	31	31	1.93
43849853--43849896	22	2.0	22	95	0	79	11	22	31	34	1.90
43852395--43852421	13	2.1	13	100	0	54	14	14	7	62	1.51
43852780--43852832	26	2.0	26	85	7	72	49	0	3	47	1.19
43861408--43861492	40	2.1	40	89	8	129	22	25	28	23	1.99
43861468--43861748	142	2.0	139	89	3	429	29	20	21	28	1.98
43861677--43861780	40	2.6	40	87	4	138	26	19	24	29	1.98
43862085--43862145	14	4.3	14	87	4	86	21	0	31	47	1.51
43862085--43862151	29	2.3	28	84	5	89	20	0	32	46	1.51
43862147--43862216	7	9.9	7	92	3	113	14	0	55	30	1.39
43862085--43862246	7	22.9	7	80	7	76	19	0	41	39	1.51
43864450--43864512	31	2.0	31	100	0	126	26	12	12	47	1.78
43893732--43893945	55	3.9	56	82	2	234	26	20	12	41	1.88
43898196--43898230	18	1.9	18	88	0	52	11	17	8	62	1.52
43899762--43899818	28	2.0	28	89	0	87	31	24	21	22	1.98
43900150--43900390	81	3.0	81	85	3	272	17	18	21	43	1.88
43900150--43900390	27	9.0	27	79	3	247	17	18	21	43	1.88
43904307--43904367	25	2.4	25	97	0	113	21	37	14	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43904307--43904376	25	2.8	25	91	0	95	24	37	12	25	1.91
43904509--43904564	28	2.0	28	93	6	96	25	30	12	32	1.92
43904514--43904577	28	2.3	28	89	2	94	28	25	12	34	1.92
43909122--43909261	39	3.6	38	76	6	138	18	25	20	35	1.96
43913909--43913979	24	2.9	25	77	10	74	28	25	18	28	1.98
43913897--43914011	49	2.3	49	79	4	133	26	22	17	33	1.96
43920192--43920281	25	3.6	25	80	8	87	26	25	17	30	1.98
43920442--43920503	31	2.1	30	82	17	76	46	8	16	29	1.75
43927967--43928018	26	2.0	27	88	3	79	65	7	25	1	1.30
43930033--43930066	12	3.0	11	87	8	50	8	17	0	73	1.08
43930307--43930344	17	2.2	17	95	0	67	42	13	15	28	1.85
43941137--43941186	21	2.4	19	81	18	64	14	34	4	48	1.62
43951836--43951892	16	3.6	16	77	15	64	68	0	0	31	0.90
43951836--43951888	24	2.2	24	86	6	72	69	0	0	30	0.88
43960695--43960720	4	6.5	4	100	0	52	0	26	0	73	0.84
43974597--43974645	21	2.5	20	80	12	57	36	8	14	40	1.75
43975776--43975852	38	2.0	38	89	0	118	32	1	35	31	1.66
43982415--43982637	40	5.6	40	82	4	202	26	27	20	24	1.99
43982413--43982637	80	2.8	79	81	3	236	27	28	20	24	1.99
43985799--43985871	38	1.9	38	94	0	128	31	1	34	32	1.67
43986626--43986676	23	2.2	23	89	0	75	27	11	37	23	1.90
43988941--43989060	46	2.6	46	85	6	161	31	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43988954--43989075	46	2.7	46	85	8	153	31	19	22	26	1.98
43991489--43991553	32	2.1	32	97	2	123	30	9	12	47	1.72
43992097--43992188	41	2.3	39	85	5	130	71	10	15	2	1.23
43992101--43992188	21	4.4	20	84	12	110	70	11	15	2	1.26
43995346--43995410	32	2.1	32	97	2	123	30	9	12	47	1.72
43996172--43996213	20	2.1	20	86	0	57	47	0	7	45	1.30
43999313--43999362	23	2.2	23	82	7	57	56	0	10	34	1.33
43999521--43999581	21	2.9	21	75	20	63	73	3	19	3	1.11
43999924--43999961	20	1.9	20	84	10	51	52	0	15	31	1.43
44001670--44001723	26	2.1	25	83	10	65	35	20	24	20	1.96
44001925--44002092	32	5.2	32	76	4	133	22	20	20	36	1.95
44001973--44002092	64	1.9	64	82	3	152	23	21	19	35	1.96
44010761--44011166	47	8.6	47	90	2	614	33	7	29	29	1.86
44010761--44011166	96	4.3	96	92	2	671	33	7	29	29	1.86
44010761--44011166	143	2.9	143	88	5	624	33	7	29	29	1.86
44015519--44015567	24	2.0	24	84	0	62	59	4	2	34	1.28
44017542--44018043	169	3.0	169	89	2	762	27	26	16	28	1.97
44018063--44018240	44	4.0	44	91	1	259	31	26	16	25	1.96
44023245--44023296	26	2.0	26	84	0	68	61	3	1	32	1.25
44029078--44029152	19	3.8	19	91	6	114	36	18	10	34	1.86
44030615--44030686	28	2.5	28	93	2	117	40	19	25	15	1.90
44030643--44030814	45	3.9	45	79	3	195	35	18	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44030643--44030815	88	2.0	89	88	1	258	35	17	28	17	1.94
44030759--44030790	17	1.9	17	93	6	57	34	18	34	12	1.89
44030775--44030902	28	4.6	28	80	3	159	35	17	31	16	1.92
44030775--44030926	56	2.7	56	83	2	171	36	17	29	16	1.92
44030775--44030926	28	5.4	28	77	4	146	36	17	29	16	1.92
44032358--44032428	23	3.1	22	78	15	81	19	18	18	43	1.88
44034486--44034594	49	2.2	49	82	6	123	25	15	29	29	1.96
44039339--44039431	28	3.3	28	87	0	132	45	19	20	15	1.86
44039367--44039542	72	2.4	72	78	3	183	42	17	23	16	1.88
44041986--44042014	15	1.9	15	100	0	58	31	0	13	55	1.39
44050610--44050786	44	4.0	44	83	0	183	38	19	27	15	1.91
44050771--44050913	28	5.1	28	81	4	126	38	18	27	14	1.90
44051849--44051907	31	1.9	31	82	0	73	40	6	5	47	1.52
44060833--44060884	17	2.8	20	71	17	56	42	13	13	30	1.83
44061402--44061540	28	4.9	28	83	2	179	12	20	23	43	1.86
44061403--44061535	57	2.4	57	87	1	187	12	20	23	43	1.86
44065959--44066062	51	2.0	51	88	3	156	26	13	12	47	1.79
44066767--44066812	21	2.2	21	84	7	58	58	2	2	36	1.22
44074618--44074734	24	4.9	24	77	2	92	19	17	16	47	1.83
44074613--44074734	48	2.5	48	82	0	136	18	17	17	46	1.84
44076847--44076931	42	2.0	42	93	0	143	50	11	10	27	1.71
44078309--44078348	19	2.0	20	90	4	64	40	25	0	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44082306--44082487	88	2.0	88	88	3	265	41	9	20	28	1.83
44082968--44083035	29	2.4	29	82	7	77	14	22	19	44	1.86
44086822--44086847	7	3.7	7	100	0	52	26	0	0	73	0.84
44090149--44090216	35	1.9	35	90	0	109	14	8	32	44	1.76
44090160--44090253	35	2.7	34	83	5	107	14	10	30	43	1.80
44092167--44092199	16	2.1	16	100	0	66	33	6	12	48	1.65
44098652--44098677	12	2.2	12	100	0	52	42	19	7	30	1.79
44100121--44100161	21	2.0	21	90	4	66	36	0	12	51	1.40
44100336--44100372	11	3.2	12	81	11	51	59	0	5	35	1.20
44100583--44100648	31	2.2	29	82	10	80	30	10	12	46	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216