genome.fa.s15.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  148  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46742263--46742367	28	3.8	28	75	9	97	61	3	12	21	1.46
46742232--46742367	56	2.4	56	78	7	159	58	4	14	22	1.55
46743387--46743428	21	2.0	21	81	9	50	35	9	2	52	1.47
46745560--46745669	45	2.5	44	79	4	121	26	25	16	31	1.96
46748378--46748415	11	3.4	11	88	3	58	39	5	0	55	1.23
46753229--46753351	35	3.5	35	82	2	131	26	16	29	27	1.97
46755133--46755207	11	6.8	11	71	24	52	52	2	2	42	1.29
46755154--46755207	18	3.0	18	75	8	56	50	3	3	42	1.38
46759469--46759511	21	2.0	21	95	0	77	27	37	18	16	1.92
46760023--46761470	4	361.8	4	87	1	1779	26	5	24	43	1.76
46775272--46775322	21	2.4	21	76	0	57	62	3	1	31	1.24
46775775--46775807	16	2.1	16	88	5	50	21	3	18	57	1.53
46776749--46776790	21	1.9	22	85	9	59	42	7	2	47	1.43
46781712--46781754	20	2.2	20	87	4	61	74	4	2	18	1.10
46794116--46794346	94	2.5	94	82	2	259	32	18	19	29	1.96
46794171--46794443	138	2.0	138	80	2	307	33	17	19	29	1.95
46812161--46812190	15	2.0	15	93	0	51	70	0	13	16	1.18
46814684--46814709	5	5.2	5	100	0	52	23	19	19	38	1.93
46821530--46821566	19	1.9	19	94	0	65	27	21	24	27	1.99
46837624--46837674	23	2.2	23	89	6	77	41	19	9	29	1.84
46840831--46840864	9	3.7	9	88	4	50	23	0	8	67	1.18
46840896--46840934	17	2.2	18	86	9	53	28	2	2	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46841005--46841065	30	2.0	30	93	0	104	21	22	26	29	1.99
46841156--46841210	13	3.9	13	82	17	74	40	45	0	14	1.45
46841146--46841210	30	2.1	31	94	2	114	40	43	0	16	1.49
46841191--46841307	39	3.0	39	97	1	218	50	29	2	17	1.60
46841438--46841512	37	2.0	37	92	0	123	36	5	14	44	1.68
46848945--46848976	5	6.4	5	96	0	55	0	18	3	78	0.89
46848945--46849018	15	5.1	15	80	12	59	0	25	6	67	1.15
46848963--46849018	17	3.5	17	79	18	75	0	28	8	62	1.25
46848963--46849020	30	1.9	30	96	0	107	0	29	8	62	1.25
46848968--46849020	13	3.8	13	81	18	63	0	30	9	60	1.28
46851283--46851481	41	5.0	40	70	17	130	43	1	4	51	1.27
46851306--46851353	18	2.8	18	74	22	50	43	0	0	56	0.99
46851323--46851374	15	3.6	15	80	12	56	44	0	1	53	1.11
46851452--46851493	15	2.7	16	82	14	52	45	0	2	52	1.13
46851443--46851484	15	2.9	15	82	10	52	47	0	0	52	1.00
46851619--46851728	45	2.6	44	78	8	122	31	27	5	35	1.80
46851707--46851744	16	2.4	16	90	0	58	34	34	0	31	1.58
46851853--46851883	15	2.1	15	93	0	53	25	29	6	38	1.81
46854474--46854518	19	2.4	19	92	3	74	40	0	0	60	0.97
46860166--46860214	16	3.0	16	77	11	55	67	0	8	24	1.18
46878194--46878264	35	2.0	35	94	0	124	50	12	12	23	1.75
46882340--46882381	20	2.1	20	90	0	66	38	2	35	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46893673--46893705	5	6.6	5	100	0	66	42	18	0	39	1.50
46896576--46896992	67	6.3	67	81	4	416	37	15	21	26	1.92
46896573--46897021	134	3.4	132	79	6	460	37	15	21	26	1.93
46905974--46906016	11	3.8	11	82	14	52	60	4	9	25	1.47
46905970--46906016	24	2.0	24	91	4	78	61	6	8	23	1.48
46906368--46906397	15	1.9	16	93	6	53	26	6	6	60	1.47
46911200--46911324	26	4.9	25	71	6	90	36	16	8	39	1.78
46915944--46916548	47	12.7	47	95	1	1041	32	8	29	29	1.87
46916667--46916745	37	2.1	37	90	0	122	24	18	31	25	1.98
46917957--46918465	40	12.7	40	92	0	820	26	21	25	25	2.00
46922291--46922799	47	10.7	47	95	2	876	32	8	30	29	1.87
46922906--46922984	37	2.1	37	88	4	115	24	17	31	26	1.97
46937538--46937784	76	3.3	73	75	10	207	25	21	17	35	1.95
46942822--46943009	61	3.1	61	69	17	174	44	2	5	47	1.39
46942757--46943044	120	2.4	120	90	2	461	44	1	4	49	1.33
46942766--46943044	61	4.7	58	67	19	153	44	1	4	49	1.33
46942990--46943024	18	2.0	17	88	5	52	45	0	0	54	0.99
46943171--46943275	44	2.5	40	76	15	113	31	29	4	34	1.78
46943169--46943277	45	2.6	44	81	8	129	31	29	5	33	1.80
46949255--46949394	40	3.6	39	73	11	126	22	23	17	35	1.95
46949295--46949579	36	7.7	36	63	15	114	23	23	18	33	1.97
46949252--46949590	76	4.5	75	83	6	393	24	23	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46949252--46949578	149	2.2	149	83	7	394	24	23	18	33	1.97
46953131--46953487	41	8.8	40	82	4	367	24	21	22	31	1.98
46953134--46953482	122	2.9	121	81	5	382	25	20	22	32	1.98
46953873--46953905	14	2.3	15	94	5	59	30	0	33	36	1.58
46953934--46954189	128	2.0	128	80	6	288	29	1	25	42	1.66
46956205--46956241	17	2.2	17	95	0	65	29	13	24	32	1.93
46958614--46958646	17	1.9	17	93	0	57	48	0	0	51	1.00
46958623--46958665	20	2.2	20	82	0	50	51	2	0	46	1.13
46958731--46958768	10	3.7	10	86	6	58	42	0	0	57	0.98
46959153--46959178	5	5.2	5	100	0	52	38	19	19	23	1.93
46959705--46959735	16	1.9	16	100	0	62	45	0	25	29	1.54
46960755--46960814	20	3.0	20	73	11	59	61	1	1	35	1.16
46960755--46960805	21	2.5	21	80	3	59	62	0	1	35	1.06
46964179--46964220	21	2.0	21	85	0	57	33	0	23	42	1.55
46964577--46964639	25	2.5	26	79	5	67	20	26	17	34	1.95
46964656--46964734	23	3.3	24	89	3	106	18	21	22	36	1.95
46964720--46964795	25	3.0	25	75	9	73	25	27	19	27	1.99
46970381--46970495	42	2.7	43	80	1	133	33	26	15	23	1.95
46972375--46972406	14	2.3	14	94	0	55	62	0	12	25	1.30
46972410--46972459	19	2.7	19	87	6	68	48	8	14	30	1.72
46972690--46972868	57	3.1	57	79	3	182	24	19	15	41	1.89
46972745--46972868	56	2.2	57	83	1	151	25	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46981587--46981676	46	2.0	46	84	0	117	43	7	5	43	1.56
46981773--46981903	64	2.0	64	97	0	244	36	6	3	52	1.46
46981795--46981897	32	3.2	32	64	10	84	33	8	2	55	1.46
46983486--46983597	37	3.0	37	78	12	99	41	3	2	52	1.33
46983503--46983697	68	3.0	66	76	17	217	42	4	5	48	1.44
46983575--46983708	58	2.3	59	82	8	148	44	2	5	47	1.43
46993990--46994029	16	2.5	16	91	0	62	55	0	0	45	0.99
46994094--46994189	44	2.1	46	83	7	117	37	15	3	43	1.63
46995185--46995219	18	1.9	18	88	11	54	71	2	0	25	1.00
46995290--46995351	29	2.2	28	78	13	65	46	4	3	45	1.40
46996214--46996255	22	1.9	22	95	0	75	14	0	38	47	1.44
46996286--46996525	98	2.5	97	79	9	217	38	2	17	40	1.64
46996557--46997102	125	4.3	126	88	2	776	32	17	21	28	1.96
46996557--46997102	251	2.2	251	87	1	808	32	17	21	28	1.96
47000149--47000229	38	2.1	38	97	0	153	46	8	1	43	1.42
47000533--47000584	21	2.5	22	90	6	81	7	19	36	36	1.80
47000826--47000868	18	2.4	18	92	0	68	44	11	27	16	1.82
47002665--47002721	29	2.0	29	92	0	96	54	3	1	40	1.28
47002718--47002781	33	1.9	33	84	12	87	45	0	29	25	1.54
47002718--47002784	11	6.2	10	85	11	71	46	0	29	23	1.53
47009846--47009891	14	3.3	14	77	20	51	43	0	8	47	1.34
47011215--47011247	11	2.8	12	90	9	50	27	0	6	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47015448--47015499	25	2.1	24	82	3	59	19	28	21	30	1.97
47022395--47022458	33	1.9	34	83	3	85	48	12	6	32	1.66
47023649--47023835	92	2.0	92	93	0	320	48	14	17	19	1.82
47024114--47024143	15	2.0	15	93	0	51	10	6	10	73	1.25
47025775--47025812	20	1.9	20	100	0	76	42	2	10	44	1.52
47030929--47030978	13	3.9	12	77	12	55	38	28	2	32	1.68
47034132--47034159	6	4.7	6	100	0	56	64	0	0	35	0.94
47034991--47035028	14	2.5	15	87	8	51	2	15	5	76	1.08
47037724--47037761	19	2.0	19	94	0	67	65	0	13	21	1.26
47038723--47038780	10	6.0	9	78	13	53	34	12	0	53	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216