genome.fa.s15.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  152  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48128006--48128045	12	3.5	11	83	10	53	37	2	35	25	1.69
48135626--48135818	51	3.8	51	84	2	237	26	16	26	30	1.96
48139902--48139946	19	2.3	20	88	7	67	44	6	22	26	1.77
48146517--48146554	16	2.4	16	86	4	51	23	0	18	57	1.40
48156516--48156555	17	2.4	17	86	0	53	62	2	12	22	1.42
48167040--48167510	106	4.5	106	85	2	599	33	16	14	34	1.90
48168229--48168259	15	2.1	15	100	0	62	41	32	0	25	1.56
48171207--48171699	47	10.4	47	92	1	797	33	8	29	29	1.86
48171211--48171699	143	3.4	143	95	0	874	33	8	29	29	1.87
48171207--48171699	190	2.6	188	92	1	815	33	8	29	29	1.86
48171818--48171896	37	2.1	37	88	0	113	24	17	31	26	1.97
48187916--48187948	2	16.5	2	100	0	66	51	48	0	0	1.00
48190712--48190750	16	2.5	15	83	4	51	38	2	2	56	1.27
48191677--48191737	31	1.9	32	87	12	90	34	6	13	45	1.69
48193064--48193324	68	3.8	68	82	1	326	35	17	19	27	1.95
48194938--48195042	29	3.6	29	77	3	113	45	18	11	24	1.82
48198660--48198740	40	2.0	40	97	0	153	33	22	18	25	1.97
48202768--48202945	27	6.6	27	82	5	198	26	15	28	29	1.96
48202769--48202924	82	1.9	81	88	3	233	26	15	28	29	1.96
48202765--48202945	82	2.2	81	83	2	229	27	15	28	29	1.96
48210917--48210968	22	2.4	22	90	0	86	23	1	26	48	1.62
48215879--48215942	33	1.9	33	93	6	112	9	17	28	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48222581--48222699	59	2.0	59	88	0	175	24	27	30	17	1.97
48223466--48223610	41	3.5	41	86	3	211	33	15	27	22	1.95
48225469--48225500	12	2.6	13	85	14	50	56	6	0	37	1.25
48230092--48230139	19	2.4	21	76	16	57	33	2	8	56	1.41
48230459--48230512	12	4.3	12	82	13	65	18	20	1	59	1.47
48246091--48246128	18	2.1	18	100	0	76	26	10	5	57	1.53
48252138--48252325	45	4.2	45	84	4	220	22	14	27	36	1.93
48252141--48252317	90	2.0	88	86	2	246	22	14	27	35	1.93
48258964--48258997	11	3.0	11	83	8	50	32	2	8	55	1.45
48260878--48261003	44	2.9	43	81	5	146	30	15	19	34	1.93
48261356--48261460	44	2.4	44	80	1	111	35	11	20	32	1.89
48261222--48261461	45	5.5	44	76	5	144	34	13	21	30	1.92
48263026--48263204	53	3.2	54	77	16	175	32	8	2	56	1.44
48263111--48263216	53	2.0	55	90	7	173	33	6	1	58	1.35
48271570--48271615	4	11.8	4	82	13	60	73	0	2	23	0.94
48272842--48273064	44	5.0	44	83	4	218	30	21	15	33	1.94
48279789--48279837	4	12.5	4	79	12	57	71	4	0	24	1.03
48279789--48279837	11	4.5	11	72	23	50	71	4	0	24	1.03
48297313--48297364	26	2.0	26	88	0	77	30	30	17	21	1.96
48297456--48297575	26	4.6	26	72	0	105	21	27	17	33	1.96
48297447--48297575	52	2.5	52	78	5	127	23	25	17	34	1.96
48303569--48303615	22	2.1	23	84	11	62	44	4	12	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48303569--48303617	23	2.1	23	82	14	57	44	4	12	38	1.61
48307354--48307531	27	6.6	27	79	3	115	28	28	16	26	1.97
48307354--48307531	54	3.3	55	80	10	204	28	28	16	26	1.97
48307375--48307530	82	1.9	81	85	3	215	28	28	16	26	1.97
48315418--48315595	27	6.6	27	79	3	115	28	28	16	26	1.97
48315418--48315595	54	3.3	55	80	10	204	28	28	16	26	1.97
48315439--48315594	82	1.9	81	85	3	215	28	28	16	26	1.97
48325490--48325531	22	1.9	22	90	0	66	38	2	16	42	1.61
48325623--48325876	127	2.0	127	98	0	490	29	14	12	43	1.82
48327965--48328028	25	2.6	25	82	0	83	29	26	17	26	1.97
48330907--48331114	27	7.7	27	82	5	213	43	21	14	20	1.87
48330907--48331140	82	2.9	82	81	8	235	43	20	14	21	1.88
48330987--48331130	27	5.3	26	78	15	132	43	20	14	20	1.87
48331307--48331380	26	2.8	26	79	0	85	18	21	18	40	1.91
48331312--48331388	26	3.0	26	73	7	75	19	20	19	40	1.92
48331499--48331546	24	2.0	24	91	0	78	25	25	25	25	2.00
48334626--48334704	37	2.1	37	90	0	122	25	31	18	24	1.98
48334824--48335194	47	7.9	47	97	0	679	29	29	9	30	1.88
48334962--48335040	25	3.3	25	64	10	74	34	27	5	32	1.79
48342687--48342934	27	9.2	27	83	4	259	44	19	14	20	1.86
48344466--48344506	18	2.3	18	84	16	50	24	7	4	63	1.40
48345743--48345804	17	3.4	17	69	26	54	27	1	24	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48345716--48345851	39	3.5	39	91	0	218	28	3	22	45	1.69
48352039--48352179	39	3.6	39	87	0	210	30	4	19	45	1.70
48354715--48354747	13	2.6	13	90	4	50	21	0	3	75	0.93
48354704--48354746	17	2.4	18	88	3	61	20	2	4	72	1.14
48355830--48355943	57	2.0	58	87	1	167	45	7	18	28	1.75
48357332--48357387	28	2.0	28	100	0	112	32	10	10	46	1.73
48359820--48359865	16	2.9	16	87	6	67	32	15	2	50	1.56
48360764--48360791	7	4.0	7	100	0	56	42	0	0	57	0.99
48364088--48364153	35	1.9	34	84	9	89	53	1	3	42	1.25
48364277--48364342	19	3.3	19	72	12	60	59	19	3	18	1.51
48364261--48364324	22	3.0	22	66	13	62	57	20	7	14	1.61
48364261--48364342	41	2.0	41	95	0	146	57	20	6	15	1.60
48364445--48364475	9	3.4	9	90	0	53	25	12	22	38	1.90
48364529--48364565	9	4.1	9	92	0	65	45	13	10	29	1.77
48364905--48364962	18	3.2	17	76	16	55	24	24	0	51	1.48
48365234--48365268	18	1.9	18	88	11	54	34	5	0	60	1.21
48365918--48365969	23	2.3	23	79	0	59	34	7	30	26	1.85
48370185--48370533	145	2.4	146	85	5	449	33	10	13	42	1.80
48371225--48371260	18	2.0	18	100	0	72	27	5	5	61	1.41
48372022--48372306	41	6.9	40	85	3	311	30	27	21	20	1.98
48372343--48372470	40	3.2	39	75	3	114	22	20	21	35	1.96
48373710--48374220	255	2.0	251	89	6	782	40	8	15	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48376686--48376746	21	2.9	21	85	0	77	24	9	36	29	1.88
48385014--48385074	30	2.0	30	93	0	104	29	31	21	18	1.96
48387189--48387284	39	2.5	39	92	0	165	27	19	15	37	1.92
48387297--48387351	16	3.4	16	73	26	62	20	32	3	43	1.69
48387294--48387354	32	1.9	32	100	0	122	22	31	3	42	1.70
48391630--48391739	39	2.7	41	83	5	120	29	15	17	38	1.90
48391644--48391739	39	2.5	39	87	0	147	27	17	16	38	1.91
48391752--48391806	16	3.4	16	71	26	53	20	30	3	45	1.68
48391749--48391809	32	1.9	32	96	0	113	22	29	3	44	1.69
48393463--48393542	20	3.9	20	82	6	88	28	22	21	27	1.99
48398597--48398648	26	2.0	25	85	3	68	57	13	0	28	1.36
48400238--48400301	33	1.9	33	93	0	110	43	17	23	15	1.87
48408216--48408266	23	2.2	23	89	0	75	29	9	19	41	1.84
48418881--48418918	20	1.9	20	94	0	67	31	21	21	26	1.98
48427457--48427522	20	3.4	18	75	22	55	77	0	22	0	0.77
48427454--48427522	31	2.3	30	85	9	88	76	0	23	0	0.78
48429230--48429293	3	20.7	3	81	12	76	64	3	3	29	1.24
48429220--48429278	22	2.7	22	87	7	77	64	3	1	30	1.20
48429225--48429293	28	2.5	28	83	9	97	63	4	2	28	1.28
48431388--48431478	45	2.0	45	93	0	155	29	23	24	23	1.99
48440948--48440980	15	2.1	16	88	5	50	27	12	0	60	1.32
48448310--48448367	26	2.2	26	87	0	80	17	24	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48448319--48448376	26	2.3	26	87	3	82	17	22	24	36	1.95
48448397--48448448	25	2.1	25	85	7	70	17	26	23	32	1.96
48448494--48448556	25	2.5	24	84	5	90	25	26	15	31	1.96
48456671--48456731	26	2.4	25	81	13	72	65	4	1	27	1.22
48456755--48456808	24	2.2	24	87	6	74	57	7	3	31	1.44
48457831--48458433	50	12.2	50	74	8	286	23	18	22	34	1.96
48457882--48458433	100	5.6	100	75	8	317	24	18	22	34	1.96
48457882--48458367	150	3.3	147	80	6	520	23	18	22	35	1.96
48459770--48459809	12	3.2	12	82	6	53	5	7	0	87	0.66
48468503--48468552	20	2.5	19	84	15	57	18	0	6	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216