Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  120  of  216  ( 25871 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38229677--38229724
23
2.0
26
84
12
66
31
29
10
29
1.90
38231475--38231515
20
2.0
20
100
0
82
29
0
9
60
1.28
38231482--38231523
20
2.3
18
84
12
50
35
0
11
52
1.38
38231550--38231590
21
2.0
21
85
0
55
34
0
2
63
1.08
38234954--38235142
80
2.4
78
79
8
213
45
8
17
27
1.79
38242238--38242271
18
1.9
17
94
5
59
47
14
11
26
1.79
38246387--38246650
88
3.0
87
87
6
331
35
21
10
32
1.87
38246387--38246650
86
3.0
86
85
7
320
35
21
10
32
1.87
38246787--38246858
28
2.5
28
82
10
83
56
1
4
37
1.27
38246846--38246938
29
3.1
29
76
3
78
66
2
4
26
1.21
38246758--38246918
48
3.4
48
74
9
127
62
1
3
32
1.20
38246763--38246927
10
17.4
9
67
19
70
63
1
3
32
1.18
38246762--38246927
19
8.7
19
66
12
74
63
1
3
32
1.17
38247183--38247225
9
4.7
9
82
5
50
37
2
0
60
1.10
38247174--38247225
19
2.8
19
82
2
70
34
1
0
63
1.06
38247193--38247256
30
2.1
30
86
11
87
35
0
0
64
0.94
38247174--38247257
10
8.6
10
74
7
50
35
1
0
63
1.03
38247210--38247257
20
2.4
20
78
0
60
35
0
0
64
0.94
38247183--38247259
29
2.6
29
71
17
52
36
1
0
62
1.04
38250284--38250529
50
4.8
50
83
3
267
28
21
28
21
1.99
38252361--38252423
30
2.1
30
96
0
117
23
3
15
57
1.53
38260635--38260695
26
2.3
27
85
2
88
19
26
18
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38260808--38260861
28
1.9
28
88
0
81
27
18
22
31
1.97
38265598--38265624
9
3.0
9
100
0
54
11
11
44
33
1.75
38266415--38266602
27
7.0
26
82
10
200
39
20
20
20
1.93
38266408--38266602
54
3.6
53
82
10
225
40
20
19
20
1.92
38266415--38266605
81
2.3
80
85
7
251
38
20
20
20
1.93
38266767--38266851
26
3.2
26
86
1
107
18
22
20
38
1.93
38280269--38280394
39
3.3
39
94
1
209
30
9
11
48
1.72
38299446--38299503
24
2.4
24
82
5
82
29
27
24
18
1.98
38312426--38312492
33
2.0
33
97
0
125
23
4
22
49
1.68
38315852--38315967
27
4.3
27
75
8
83
39
14
23
22
1.91
38318344--38318375
16
2.0
16
93
0
55
40
25
9
25
1.85
38319426--38319466
21
2.0
21
85
9
57
29
17
2
51
1.58
38319438--38319477
20
2.0
21
85
5
55
25
15
5
55
1.60
38321182--38321219
19
2.0
19
89
0
58
34
23
7
34
1.84
38321783--38321845
30
2.1
31
82
8
76
39
1
42
15
1.57
38321888--38321924
18
2.1
18
89
0
56
29
10
10
48
1.72
38324948--38325084
48
2.9
48
91
1
213
61
1
23
13
1.41
38330619--38331879
424
3.0
423
91
2
1982
34
11
18
35
1.87
38337959--38338010
27
1.9
27
96
0
95
13
25
32
28
1.93
38337882--38338146
104
2.6
103
90
3
426
18
20
30
30
1.97
38338065--38338114
25
2.0
25
96
0
91
14
24
32
30
1.94
38345288--38345547
101
2.6
102
89
6
386
18
21
29
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38348318--38348403
20
4.4
20
79
5
79
10
26
19
43
1.84
38348350--38348403
19
2.8
20
78
13
58
11
25
20
42
1.85
38349001--38349042
20
2.1
20
95
0
75
14
11
23
50
1.76
38360402--38360538
43
3.2
42
81
5
139
30
21
18
29
1.97
38380042--38380077
14
2.6
14
91
8
56
0
19
0
80
0.71
38382464--38382496
16
2.1
16
94
0
57
36
3
36
24
1.71
38382729--38382763
18
2.0
17
88
5
52
54
0
0
45
0.99
38382849--38382883
18
2.0
17
88
5
52
54
0
0
45
0.99
38382804--38383123
43
7.9
40
65
23
125
48
4
2
44
1.35
38382969--38383002
17
2.0
17
88
11
52
52
0
2
44
1.16
38382709--38383123
120
3.5
120
96
1
753
48
5
1
44
1.35
38383086--38383122
16
2.2
17
86
13
51
54
0
0
45
1.00
38383099--38383145
24
1.9
24
87
12
69
55
0
2
42
1.12
38383143--38383297
75
2.0
77
91
3
251
46
2
2
48
1.29
38383188--38383420
91
2.5
91
87
7
339
47
3
2
46
1.34
38383250--38383295
18
2.7
18
86
6
60
50
2
2
45
1.26
38383214--38383420
44
4.6
46
67
21
134
47
3
2
45
1.36
38383237--38383381
44
3.2
44
70
19
145
48
2
2
46
1.31
38387407--38387465
23
2.5
24
75
8
68
54
20
10
15
1.70
38387376--38387605
107
2.1
107
95
0
406
45
23
6
24
1.76
38387511--38387573
23
2.7
24
76
16
78
52
20
7
19
1.70
38387540--38387585
22
2.1
22
84
8
58
58
19
4
17
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38387603--38387681
23
3.2
23
65
16
59
44
20
10
25
1.82
38393794--38393891
17
5.8
17
71
21
71
41
2
3
53
1.28
38393842--38393898
17
3.1
19
76
23
75
43
1
7
47
1.40
38395621--38395714
46
2.0
46
97
0
179
23
20
22
34
1.97
38396101--38396144
15
2.9
15
89
3
70
59
6
11
22
1.55
38400080--38400173
46
2.0
46
89
0
143
24
17
21
37
1.94
38404786--38404842
30
1.9
30
92
0
96
22
12
26
38
1.89
38409402--38409458
30
1.9
30
92
0
96
19
12
26
42
1.86
38419435--38419474
20
2.0
21
90
5
64
60
5
0
35
1.19
38422194--38422220
2
13.5
2
100
0
54
51
48
0
0
1.00
38422880--38423025
41
3.6
41
91
1
240
19
30
20
29
1.97
38422873--38423053
82
2.2
82
84
3
238
24
29
19
26
1.98
38426901--38426960
18
3.4
18
84
6
70
40
1
1
56
1.19
38426914--38426969
9
6.3
9
78
10
53
33
0
1
64
1.04
38428914--38428982
29
2.3
31
87
5
97
24
10
18
46
1.80
38429803--38429841
20
2.0
20
90
10
62
25
0
5
69
1.09
38430647--38430698
25
2.1
25
96
0
95
34
13
3
48
1.61
38435094--38435207
33
3.5
33
74
9
124
29
16
26
27
1.97
38435086--38435249
66
2.5
66
89
2
240
30
17
25
26
1.97
38434987--38435183
105
1.9
105
81
2
243
32
16
24
26
1.96
38435092--38435268
66
2.7
66
87
5
207
31
17
25
25
1.97
38436787--38436903
40
2.9
40
96
0
207
32
16
29
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38436851--38437775
223
4.1
224
94
1
1588
24
18
29
27
1.98
38436851--38437775
112
8.3
112
94
1
1588
24
18
29
27
1.98
38439452--38439652
84
2.4
84
93
0
330
32
20
17
28
1.96
38440852--38440891
11
3.7
11
96
3
73
37
10
25
27
1.88
38442233--38442532
17
16.6
17
70
24
163
44
11
1
42
1.51
38442224--38442374
57
2.6
58
96
1
277
45
11
1
42
1.48
38442307--38442414
40
2.7
40
95
1
198
43
11
1
43
1.50
38442351--38442475
57
2.1
60
92
5
211
44
12
1
42
1.51
38442400--38442515
44
2.7
43
90
5
184
43
11
1
43
1.50
38442444--38442576
57
2.2
60
90
5
209
43
11
1
43
1.49
38442245--38442609
101
3.6
101
94
3
630
42
10
2
44
1.51
38442501--38442592
44
2.1
44
95
0
166
41
9
2
46
1.49
38442549--38442630
13
6.3
13
72
9
69
41
8
2
47
1.47
38442772--38442921
73
2.1
73
100
0
300
50
1
6
41
1.37
38442773--38442889
38
3.2
38
67
16
118
53
1
7
36
1.40
38442977--38443582
18
33.6
18
65
28
160
45
19
0
34
1.51
38442958--38443551
25
24.1
25
86
10
807
46
19
0
34
1.51
38442960--38443591
248
2.6
242
91
7
1052
46
19
0
34
1.51
38443543--38443596
9
5.7
10
79
20
55
42
20
0
37
1.52
38449048--38449118
21
3.4
21
86
0
97
30
18
47
2
1.63
38449440--38449603
42
3.9
42
83
2
168
31
20
21
26
1.98
38449440--38449560
43
2.9
41
86
3
161
34
19
20
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38449529--38449647
42
2.8
42
93
2
195
21
22
22
32
1.98
38451381--38451433
27
2.0
27
85
7
72
64
11
9
15
1.50
38452070--38452182
51
2.2
51
91
0
181
43
6
14
36
1.70
38455830--38456025
41
4.8
41
79
3
155
18
21
25
34
1.96
38456978--38457032
28
2.0
28
85
7
76
47
5
7
40
1.54
38458278--38458305
10
2.8
10
100
0
56
42
0
14
42
1.45
38458276--38458307
10
2.8
12
81
18
50
43
0
12
43
1.42
38458374--38458425
27
1.9
27
92
0
86
42
0
11
46
1.40
38463411--38463575
66
2.5
65
85
3
206
41
16
26
15
1.88
38463552--38463617
21
3.1
21
88
0
69
33
12
43
10
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216