genome.fa.s15.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  53  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15484238--15484375	25	5.7	25	75	14	146	42	1	13	42	1.52
15484379--15485137	29	26.1	29	75	18	624	44	26	0	28	1.57
15484462--15485034	103	5.3	102	82	11	577	45	27	0	27	1.57
15484874--15484916	23	2.0	20	95	4	59	48	20	0	30	1.50
15484404--15485141	183	3.9	184	82	12	873	44	26	0	27	1.57
15485013--15485058	22	2.2	21	85	11	60	45	26	0	28	1.54
15484959--15485166	103	2.0	104	95	0	373	44	25	1	28	1.62
15485116--15485161	22	2.2	20	88	11	67	45	28	0	26	1.54
15485163--15485496	116	2.9	116	97	0	632	38	8	9	43	1.68
15485472--15485513	17	2.4	18	80	4	50	42	9	2	45	1.49
15488527--15488902	126	3.0	123	85	6	526	31	22	15	30	1.95
15493400--15493459	30	2.0	30	83	3	75	40	0	38	21	1.54
15493673--15493718	9	5.1	9	89	0	74	32	10	10	45	1.74
15515406--15515451	24	1.9	24	95	0	83	32	10	15	41	1.82
15519826--15520074	76	3.3	76	79	1	284	29	14	23	32	1.94
15519981--15520048	25	2.7	25	76	10	68	32	14	19	33	1.92
15521460--15521526	31	2.2	31	83	0	80	34	16	22	26	1.95
15521770--15521794	3	8.3	3	100	0	50	68	0	0	32	0.90
15524975--15525167	21	9.2	21	69	6	122	19	22	15	42	1.89
15524966--15525120	42	3.7	42	85	0	229	18	21	15	44	1.86
15524973--15525162	84	2.3	83	87	2	272	18	22	15	43	1.87
15528714--15528763	20	2.5	20	86	0	64	26	26	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15532007--15532488	70	7.0	68	77	8	368	25	22	21	30	1.99
15532069--15532473	133	3.0	134	79	5	368	25	22	21	30	1.99
15532381--15532619	121	2.0	119	81	3	282	25	21	19	33	1.97
15532494--15532799	70	4.3	70	70	8	201	25	21	18	33	1.96
15532494--15532805	140	2.2	141	80	6	364	25	20	19	33	1.97
15537218--15537247	13	2.4	12	94	5	51	63	0	0	36	0.95
15537325--15537364	18	2.2	18	86	0	53	50	2	10	37	1.50
15541896--15541961	24	2.8	24	86	6	82	33	3	6	57	1.38
15545558--15545638	40	2.0	40	95	0	144	23	23	28	24	2.00
15556252--15556286	16	2.3	15	90	9	54	22	11	14	51	1.74
15558056--15558173	45	2.6	45	91	0	191	41	10	16	32	1.81
15558018--15558177	45	3.6	43	77	9	142	40	10	17	31	1.84
15569963--15570079	58	2.0	58	93	0	198	38	15	10	35	1.81
15571887--15572017	69	1.9	69	87	3	192	16	35	17	30	1.93
15573043--15573085	21	2.2	19	83	8	50	44	0	11	44	1.40
15573864--15573920	29	1.9	30	82	10	73	73	3	8	14	1.20
15582781--15582818	11	3.5	11	82	3	51	13	0	2	84	0.73
15585916--15585954	6	6.3	6	96	3	69	48	20	0	30	1.50
15587176--15587209	12	2.8	12	90	0	50	38	2	2	55	1.30
15600620--15600667	18	2.6	17	83	9	51	20	10	0	68	1.18
15611686--15611743	29	1.9	31	89	6	93	39	15	15	29	1.88
15612095--15612150	27	2.1	27	86	0	76	26	16	19	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15612131--15612301	27	6.3	27	83	1	207	19	14	20	45	1.85
15612127--15612301	81	2.1	82	86	3	246	20	14	20	45	1.85
15614381--15614462	33	2.5	33	84	2	94	19	43	17	19	1.88
15619124--15619179	29	1.9	29	96	0	103	33	28	10	26	1.90
15623372--15623553	57	3.1	57	83	10	238	26	19	6	47	1.73
15623468--15623504	6	5.8	6	87	12	56	16	16	0	67	1.23
15623414--15623553	63	2.2	65	86	10	205	25	20	5	47	1.72
15624635--15624766	37	3.6	37	83	3	142	19	8	30	41	1.81
15629037--15629121	27	3.2	27	77	11	77	22	22	20	35	1.96
15633073--15633157	43	2.0	43	83	4	109	22	25	4	47	1.71
15637733--15637765	15	2.2	15	94	0	57	54	9	9	27	1.62
15638949--15639036	42	2.1	43	89	6	135	27	23	2	46	1.64
15648374--15648599	105	2.2	105	83	5	280	31	15	20	32	1.94
15648397--15648599	105	1.9	104	86	4	284	32	15	19	33	1.93
15648587--15649457	69	12.6	68	73	7	519	28	16	24	29	1.97
15648610--15649470	207	4.2	207	75	4	707	28	17	24	30	1.97
15660742--15660832	44	2.0	45	89	8	139	26	14	10	48	1.77
15662145--15662333	91	2.1	91	84	5	249	29	6	20	43	1.77
15669169--15669236	20	3.4	20	75	0	64	41	20	26	11	1.87
15671824--15671899	26	3.0	26	84	5	84	34	25	21	19	1.96
15680386--15680431	22	2.0	23	84	12	60	26	6	0	67	1.15
15680342--15680447	21	5.4	18	71	15	59	32	5	0	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15680751--15680793	9	4.8	9	85	0	59	23	32	0	44	1.54
15680728--15680784	18	3.2	18	82	9	71	24	36	0	38	1.56
15683524--15683648	43	2.9	43	82	8	146	32	28	18	20	1.96
15687879--15687906	14	2.0	14	100	0	56	28	7	35	28	1.84
15692935--15692981	19	2.4	20	89	3	69	12	6	23	57	1.58
15693120--15693144	13	1.9	13	100	0	50	0	16	0	84	0.63
15696634--15696982	185	1.9	184	90	1	556	26	16	19	38	1.92
15724808--15724852	19	2.4	19	78	10	56	40	0	4	55	1.20
15728027--15728055	2	14.5	2	100	0	58	0	48	0	51	1.00
15736717--15736745	9	3.2	9	100	0	58	31	0	0	68	0.89
15739227--15739252	5	5.2	5	100	0	52	42	19	19	19	1.90
15741537--15741573	9	4.1	9	92	0	65	45	13	10	29	1.77
15741884--15741950	9	7.4	9	82	0	89	41	22	10	25	1.85
15742053--15742077	13	1.9	13	100	0	50	12	0	48	40	1.40
15746148--15746201	23	2.3	23	83	0	63	22	29	22	25	1.99
15762035--15762105	34	2.1	34	97	0	133	57	18	0	23	1.40
15764849--15764895	2	25.5	2	76	23	50	46	2	0	51	1.13
15770475--15770946	120	3.9	120	98	0	892	52	4	0	41	1.28
15773729--15773768	18	2.2	18	95	0	71	52	2	37	7	1.43
15781547--15781573	13	2.1	13	100	0	54	70	0	7	22	1.12
15781724--15781782	26	2.2	27	82	8	68	61	5	0	33	1.18
15781718--15781782	27	2.3	29	77	15	75	60	4	0	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15781769--15781823	20	2.7	20	82	2	65	61	7	0	30	1.23
15781816--15781868	19	2.8	18	81	13	63	56	3	0	39	1.17
15782498--15782602	10	10.7	10	74	11	74	33	1	3	60	1.25
15782507--15782589	9	8.7	9	73	16	60	33	2	2	61	1.22
15782506--15782609	19	5.2	20	74	12	72	31	1	3	62	1.24
15782673--15782746	30	2.4	31	84	8	89	29	0	8	62	1.24
15782757--15782803	19	2.5	19	86	6	60	17	8	0	74	1.05
15782757--15782814	18	3.1	19	82	12	66	18	8	0	72	1.10
15795453--15795496	17	2.6	17	85	10	63	63	4	0	31	1.14
15795466--15795949	98	5.0	93	78	11	401	56	15	0	27	1.45
15795458--15795851	98	4.0	98	78	12	430	57	15	0	26	1.44
15795778--15795945	92	1.9	90	85	9	236	54	17	0	27	1.47
15796322--15796397	28	2.7	28	91	0	125	44	3	7	43	1.51
15802259--15802350	48	1.9	48	86	0	130	26	9	15	48	1.75
15805329--15805447	44	2.7	44	77	10	118	28	24	21	26	1.99
15809423--15809606	60	3.1	60	82	4	185	22	16	17	43	1.87
15810487--15810863	95	3.9	95	82	10	465	28	0	14	56	1.44
15810487--15810863	194	1.9	197	86	6	545	28	0	14	56	1.44
15810812--15810854	23	2.0	21	81	9	50	18	0	16	65	1.28
15810840--15810876	17	2.3	16	90	9	58	32	0	5	62	1.18
15813188--15813350	75	2.2	76	89	1	247	28	7	11	52	1.64
15815566--15815619	23	2.4	23	78	12	58	64	5	0	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15818798--15818974	64	2.8	64	87	10	249	31	8	17	42	1.79
15819093--15819415	41	7.9	41	91	2	443	19	18	28	32	1.96
15820083--15820117	15	2.3	15	90	9	54	25	0	22	51	1.48
15822289--15822376	27	3.3	27	85	0	113	30	23	27	18	1.97
15825574--15825631	9	6.0	9	78	13	62	63	3	0	32	1.11
15825574--15825631	10	5.9	10	79	4	57	63	3	0	32	1.11
15827673--15827701	14	2.0	15	93	6	51	27	0	20	51	1.47
15828848--15828963	43	2.7	42	82	5	151	25	19	27	26	1.99
15843398--15843471	34	2.2	34	92	0	121	20	8	32	39	1.82
15845348--15845476	41	3.1	41	79	2	123	33	24	20	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216