genome.fa.s15.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  19  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5926566--5926680	37	2.9	40	78	8	146	33	23	16	26	1.95
5929552--5929611	25	2.4	25	85	0	84	16	13	15	55	1.70
5934557--5934618	26	2.5	24	76	7	61	32	19	20	27	1.97
5940253--5940321	30	2.3	30	76	2	84	30	23	4	42	1.73
5944356--5944428	25	2.8	25	75	21	71	41	0	1	57	1.07
5944591--5944641	16	3.3	15	75	20	52	54	1	1	41	1.22
5949856--5949898	21	2.0	23	81	9	54	44	9	13	32	1.76
5952743--5952953	34	6.1	34	82	2	206	42	15	22	19	1.88
5952743--5952953	103	2.0	103	90	0	332	42	15	22	19	1.88
5953191--5953228	14	2.8	13	88	7	58	34	10	7	47	1.67
5958922--5958963	22	1.9	22	95	0	75	61	11	0	26	1.30
5958923--5958969	11	4.4	11	81	2	60	61	10	0	27	1.29
5960304--5960340	18	2.1	18	89	0	56	43	0	0	56	0.99
5960652--5960706	24	2.3	23	87	12	76	36	1	3	58	1.26
5960652--5960721	24	2.9	24	81	10	63	37	1	2	58	1.22
5966187--5966242	14	3.8	14	81	11	67	37	23	5	33	1.78
5975340--5975376	19	1.9	19	94	0	65	75	13	0	10	1.04
5977184--5977225	21	2.0	21	100	0	84	33	4	4	57	1.41
5979454--5979493	16	2.5	16	91	0	62	47	2	7	42	1.45
5979496--5979611	59	2.0	59	91	1	189	41	6	7	44	1.58
5980902--5980958	27	2.1	28	84	9	75	57	3	0	38	1.16
5982020--5982048	13	2.1	14	93	6	51	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5988036--5988083	19	2.6	18	74	9	51	41	0	0	58	0.98
5988047--5988080	9	3.4	10	88	12	52	47	0	0	52	1.00
5989062--5989117	29	1.9	29	88	0	85	33	14	7	44	1.72
5989787--5989833	16	3.2	16	77	20	57	61	2	0	36	1.08
5990787--5990846	24	2.7	21	80	14	75	13	6	55	25	1.62
5990797--5990882	24	3.5	24	88	4	109	15	6	52	25	1.67
5990805--5990834	15	2.0	15	93	0	51	10	6	56	26	1.57
5990808--5991219	27	15.1	27	67	11	126	23	8	44	24	1.80
5991015--5991065	6	8.5	6	88	0	75	29	11	37	21	1.89
5991009--5991110	18	5.8	18	74	13	79	24	10	42	22	1.85
5991015--5991110	12	8.2	12	71	11	74	25	11	41	21	1.86
5991057--5991152	33	2.9	33	82	0	111	19	10	46	22	1.80
5991045--5991212	21	8.0	21	71	7	99	21	9	45	23	1.81
5991039--5991152	39	2.7	43	80	8	128	21	11	44	21	1.84
5991141--5991194	15	3.8	15	71	14	60	22	5	44	27	1.75
5991090--5991166	39	2.0	39	81	0	91	24	10	42	22	1.84
5991005--5991224	54	4.1	54	74	11	200	22	9	43	24	1.82
5991348--5991382	18	1.9	18	88	0	52	28	5	42	22	1.76
5997205--5997265	20	3.0	20	70	15	54	68	3	1	26	1.14
5998617--5998661	23	2.0	23	90	0	72	55	26	0	17	1.42
5998619--5998661	12	3.7	12	84	6	52	53	27	0	18	1.45
6004955--6005060	30	3.5	29	75	10	88	22	2	50	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6004975--6005264	156	1.9	156	91	2	476	25	4	51	18	1.65
6004975--6005234	78	3.3	78	96	1	468	25	5	51	18	1.66
6005209--6005294	30	2.7	30	76	10	82	24	4	51	19	1.66
6005305--6005345	18	2.3	18	86	0	55	26	2	53	17	1.56
6005380--6005444	24	2.7	24	73	7	78	15	1	55	27	1.49
6005334--6005456	48	2.8	42	73	13	102	15	4	54	26	1.59
6005960--6006009	21	2.3	23	82	6	59	14	12	2	72	1.22
6012990--6013032	18	2.4	18	88	7	61	53	0	0	46	1.00
6014791--6014831	18	2.2	18	86	8	55	24	4	14	56	1.58
6015379--6015451	35	2.2	32	83	11	85	35	13	34	16	1.88
6015534--6015558	11	2.3	11	100	0	50	40	8	0	52	1.31
6015517--6015643	41	3.1	40	88	4	191	30	4	0	64	1.14
6015557--6015618	9	6.4	9	72	20	54	25	1	0	72	0.94
6015517--6015650	40	3.3	41	89	5	202	30	4	0	64	1.13
6015639--6015669	6	5.0	6	96	4	53	19	0	0	80	0.71
6016411--6016461	21	2.4	22	83	12	70	60	3	0	35	1.15
6028430--6028468	20	1.9	21	89	5	62	46	7	2	43	1.46
6028940--6029024	40	2.1	41	93	2	145	5	15	17	61	1.53
6030880--6030946	34	1.9	35	90	3	109	44	13	8	32	1.75
6031478--6031516	4	9.8	4	100	0	78	48	25	0	25	1.51
6035084--6035136	24	2.2	23	83	6	61	43	22	0	33	1.54
6037634--6037693	9	6.7	9	88	0	84	26	10	21	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6037634--6037693	27	2.2	27	90	0	93	26	10	21	41	1.85
6037720--6037780	28	2.2	27	80	8	68	32	8	16	42	1.78
6042001--6042057	26	2.1	27	87	9	82	45	0	7	47	1.30
6058898--6058956	25	2.4	25	97	0	109	62	0	3	33	1.12
6060187--6060217	3	10.3	3	100	0	62	32	0	0	67	0.91
6066771--6067550	88	8.9	88	90	0	1155	26	22	26	24	2.00
6067524--6067721	44	4.5	44	90	0	288	31	13	23	31	1.93
6069558--6069582	6	4.2	6	100	0	50	32	0	0	68	0.90
6072918--6072967	21	2.4	21	86	0	73	36	18	44	2	1.61
6073370--6073614	42	5.9	41	87	5	348	21	20	22	35	1.96
6073370--6073614	85	2.9	84	90	3	386	21	20	22	35	1.96
6073370--6073614	127	1.9	125	90	3	393	21	20	22	35	1.96
6078691--6078735	23	2.0	23	86	0	63	15	13	37	33	1.86
6079074--6079274	87	2.3	87	89	1	242	24	22	23	28	1.99
6079105--6079489	44	8.8	45	73	11	254	25	21	21	31	1.98
6079105--6079440	131	2.6	128	77	10	312	25	22	21	31	1.98
6099079--6099225	3	49.0	3	100	0	294	0	33	0	66	0.92
6099402--6099447	24	1.9	24	86	8	67	43	4	2	50	1.34
6100987--6101021	16	2.2	16	94	0	61	17	17	20	45	1.85
6104058--6104148	47	1.9	47	84	0	119	41	19	21	16	1.90
6105463--6105865	45	9.0	45	88	0	554	30	16	22	30	1.96
6106058--6106956	450	2.0	450	98	0	1744	34	19	20	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6107460--6107505	4	12.0	4	77	9	51	19	2	2	76	1.00
6107456--6107504	15	3.2	14	80	13	53	16	2	2	79	0.92
6108152--6108186	3	11.7	3	93	0	61	28	2	0	68	1.04
6108389--6108434	24	1.9	24	86	8	67	43	4	2	50	1.34
6109206--6109416	11	20.9	11	69	23	110	38	1	0	59	1.10
6109151--6109416	41	6.7	39	92	5	410	36	1	0	61	1.10
6109312--6109381	17	3.7	17	70	23	50	41	1	0	57	1.08
6109356--6109416	31	2.0	32	90	6	99	37	1	0	60	1.07
6109900--6109950	26	2.2	24	78	21	56	60	5	0	33	1.21
6114644--6114688	9	4.8	9	81	8	54	28	0	0	71	0.87
6114644--6114688	11	4.7	10	79	17	51	28	0	0	71	0.87
6116483--6116542	32	1.9	33	86	10	90	41	0	0	58	0.98
6118041--6118108	15	4.5	15	70	17	52	60	1	0	38	1.06
6137709--6137758	21	2.2	22	82	10	57	34	0	12	54	1.38
6138027--6138070	24	1.9	22	90	9	70	56	0	2	40	1.11
6138030--6138079	21	2.3	21	75	3	55	60	2	2	36	1.20
6139895--6139933	21	1.9	21	89	5	62	56	0	0	43	0.99
6144528--6144567	20	2.0	20	85	0	53	5	2	32	60	1.32
6153776--6153885	37	3.0	37	94	1	195	24	21	16	37	1.93
6153849--6154162	52	6.2	52	86	8	402	28	22	14	35	1.93
6153848--6154168	143	2.2	147	90	3	506	28	22	14	34	1.93
6166355--6166380	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6170667--6170743	31	2.5	31	87	4	102	58	3	6	31	1.42
6171457--6171514	18	3.3	17	80	11	55	32	0	5	62	1.18
6171634--6171705	31	2.3	31	80	2	81	45	13	1	38	1.53
6172999--6173026	2	14.0	2	100	0	56	50	0	0	50	1.00
6173741--6174131	192	2.0	192	98	0	764	38	7	16	37	1.78
6186658--6186844	60	3.2	59	87	5	288	21	20	18	39	1.92
6186668--6186842	57	3.0	57	89	3	269	20	21	18	40	1.91
6201691--6201734	23	1.9	22	82	17	54	36	25	0	38	1.56
6201779--6201872	45	2.1	45	91	0	152	31	24	19	24	1.98
6201869--6202064	51	3.9	50	78	4	223	31	28	16	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216