genome.fa.s15.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  125  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39533345--39533404	26	2.3	26	88	8	88	40	20	25	15	1.90
39533850--39533892	21	2.0	21	90	0	68	37	16	2	44	1.60
39535104--39535200	18	5.5	19	80	11	84	67	16	2	14	1.33
39535110--39535141	16	2.0	16	93	0	55	59	25	3	12	1.48
39535130--39535255	6	21.0	6	87	3	146	63	11	6	18	1.48
39535260--39535297	16	2.3	16	95	4	67	57	23	0	18	1.40
39535799--39535912	50	2.3	50	93	0	210	27	12	21	38	1.89
39536069--39536200	66	2.0	66	83	4	167	43	0	3	53	1.21
39536092--39536200	34	3.3	32	77	10	112	41	0	3	54	1.24
39536092--39536176	32	2.6	34	81	7	104	41	0	4	54	1.21
39540016--39540185	84	2.0	85	90	4	272	28	21	19	30	1.97
39543248--39543278	16	1.9	16	100	0	62	51	9	0	38	1.35
39546636--39546666	15	2.1	15	100	0	62	19	41	25	12	1.87
39560368--39560428	27	2.3	27	82	0	68	37	16	19	26	1.93
39569369--39569435	25	2.7	25	77	9	73	26	20	22	29	1.99
39570598--39570622	11	2.3	11	100	0	50	28	40	0	32	1.57
39573695--39573765	31	2.3	32	83	9	85	36	0	4	59	1.17
39578818--39579002	101	1.8	102	91	3	311	23	16	28	31	1.96
39578817--39579000	51	3.7	49	81	12	205	23	16	28	31	1.96
39578924--39579004	26	3.2	26	65	28	73	22	14	29	33	1.94
39581132--39581162	15	2.1	15	93	0	53	16	3	0	80	0.83
39589676--39589868	96	2.0	96	97	0	368	33	6	30	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39589876--39589998	55	2.2	56	88	2	176	26	12	28	33	1.92
39589876--39589998	28	4.4	28	90	2	176	26	12	28	33	1.92
39589901--39590011	28	4.0	27	90	3	116	28	11	26	33	1.91
39593364--39593392	15	1.9	15	100	0	58	34	27	6	31	1.83
39598049--39598393	27	12.8	27	79	6	288	42	21	17	19	1.90
39598548--39598653	26	4.1	26	81	4	133	15	17	25	41	1.89
39600090--39600133	12	3.7	12	76	11	54	38	0	38	22	1.55
39600090--39600136	24	1.9	25	91	4	78	38	0	36	25	1.56
39600831--39601133	27	11.2	27	78	3	261	42	20	16	20	1.89
39600831--39601132	81	3.7	80	79	6	288	43	20	16	20	1.88
39601280--39601386	26	4.1	26	91	0	151	16	18	24	40	1.91
39613074--39613203	63	2.1	63	98	0	251	20	9	25	44	1.81
39613667--39614023	81	4.4	81	82	1	405	33	19	21	25	1.97
39613688--39614008	27	11.9	27	85	2	369	33	19	20	26	1.97
39614073--39614119	24	1.9	25	91	4	78	17	8	25	48	1.74
39614072--39614126	24	2.3	24	84	6	76	21	9	23	45	1.80
39614203--39614255	27	2.0	27	82	14	65	20	28	22	28	1.99
39614246--39614297	26	2.0	26	84	0	68	15	19	26	38	1.91
39614302--39614600	32	9.4	32	72	11	202	19	20	23	36	1.95
39614299--39614586	64	4.5	64	81	4	321	19	20	23	35	1.96
39614299--39614586	128	2.2	128	84	3	357	19	20	23	35	1.96
39614299--39614536	96	2.5	96	78	4	275	19	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39622169--39622407	58	4.1	58	87	5	322	40	14	24	20	1.90
39622169--39622436	29	9.2	29	82	6	283	40	14	23	21	1.90
39635502--39635790	146	2.0	146	87	2	420	41	13	17	26	1.87
39640976--39641054	37	2.1	37	90	0	122	25	31	18	24	1.98
39641173--39641529	47	7.6	47	93	1	588	29	29	8	32	1.87
39655765--39655823	17	3.4	17	69	17	57	33	5	5	55	1.43
39660539--39660769	67	3.5	67	78	2	250	36	15	20	27	1.93
39660537--39660734	66	3.0	67	81	1	218	36	14	21	28	1.92
39660936--39660986	19	2.7	20	74	20	54	58	5	23	11	1.55
39661839--39661880	20	2.1	20	90	0	66	23	26	23	26	2.00
39667633--39667676	21	2.1	21	91	4	72	22	6	13	56	1.61
39667774--39667817	21	2.1	21	82	0	52	25	11	13	50	1.75
39674859--39674903	16	2.6	16	83	16	54	44	0	24	31	1.54
39674996--39675055	30	2.0	31	86	3	86	40	0	38	21	1.54
39696349--39696472	44	2.8	45	82	9	123	27	25	18	28	1.98
39696463--39697168	88	8.0	88	91	0	1085	27	27	19	25	1.99
39696620--39696939	44	7.3	44	64	10	143	29	27	20	23	1.98
39696582--39697071	44	11.1	44	61	11	142	28	28	18	24	1.98
39709557--39709616	28	2.2	28	87	3	86	26	5	6	61	1.42
39710336--39710370	18	2.0	18	88	5	54	37	2	0	60	1.12
39713564--39713614	21	2.5	21	77	3	59	74	3	11	9	1.19
39715770--39715846	34	2.3	34	82	12	106	54	3	6	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39715839--39715892	28	2.0	27	85	10	74	74	0	5	20	1.02
39715836--39715891	9	6.1	9	76	19	62	73	0	5	21	1.03
39716660--39716703	21	2.2	20	87	4	61	75	0	11	13	1.06
39717649--39718906	89	14.1	89	89	1	1925	28	22	17	31	1.97
39720189--39720230	7	6.0	7	79	20	52	14	16	0	69	1.20
39723096--39723191	31	3.1	31	95	3	174	31	9	13	45	1.75
39723740--39723847	30	3.3	31	75	15	94	72	7	16	3	1.22
39723740--39723778	16	2.4	16	78	0	51	76	2	12	7	1.09
39726881--39726976	31	3.1	31	92	3	165	31	8	13	46	1.73
39727660--39727701	19	2.2	19	83	8	50	40	9	21	28	1.84
39729622--39729698	34	2.3	34	82	12	106	54	3	6	35	1.45
39729691--39729744	28	2.0	27	85	10	74	74	0	5	20	1.02
39729688--39729743	9	6.1	9	76	19	62	73	0	5	21	1.03
39730511--39730554	21	2.2	20	87	4	61	75	0	11	13	1.06
39736315--39736389	36	2.1	36	82	0	87	49	8	18	24	1.74
39751582--39751776	108	1.8	107	86	4	286	33	20	14	31	1.93
39752042--39752067	4	6.5	4	100	0	52	73	0	0	26	0.84
39753666--39753734	33	2.1	33	97	0	129	47	2	14	34	1.59
39754391--39754436	6	7.7	6	85	9	67	50	0	0	50	1.00
39765854--39765905	24	2.2	24	89	0	77	50	9	3	36	1.54
39769110--39769161	24	2.2	24	89	0	77	50	9	3	36	1.54
39780054--39780117	22	2.9	22	100	0	128	35	4	32	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39795571--39795610	20	2.0	20	85	0	53	52	5	10	32	1.56
39797051--39797136	25	3.4	25	71	6	82	33	25	20	19	1.97
39808717--39808778	30	2.1	30	81	6	72	40	3	8	48	1.49
39818207--39818369	45	3.7	44	80	4	193	26	12	24	35	1.92
39818219--39818381	90	1.8	88	88	2	245	26	14	24	33	1.94
39818694--39818752	29	2.0	29	96	0	109	38	5	20	35	1.75
39824597--39824638	22	2.0	20	86	9	57	64	2	7	26	1.32
39827524--39827630	50	2.1	50	85	0	151	28	21	29	20	1.98
39833786--39833824	20	2.0	20	90	10	62	56	5	23	15	1.59
39835220--39835316	48	2.0	48	97	0	185	30	7	16	45	1.74
39838139--39838190	26	1.9	27	84	7	70	25	3	3	67	1.25
39838474--39838563	30	3.0	30	80	9	103	44	13	6	35	1.70
39841171--39841239	28	2.5	28	97	2	131	47	10	14	27	1.76
39844341--39844398	25	2.3	24	82	8	62	46	0	3	50	1.18
39844219--39844423	88	2.3	91	90	3	317	45	3	4	46	1.39
39844341--39844466	47	2.6	49	72	11	123	44	2	3	50	1.31
39844439--39844971	120	4.4	120	98	0	987	42	2	5	50	1.37
39844564--39844615	15	3.6	15	80	12	56	44	0	1	53	1.11
39844684--39844735	15	3.6	15	80	12	56	44	0	1	53	1.11
39844804--39844855	15	3.6	15	80	12	56	44	0	1	53	1.11
39844933--39844974	15	2.7	16	82	14	52	45	0	2	52	1.13
39844924--39844965	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39850005--39850051	23	2.0	23	100	0	94	40	4	4	51	1.41
39852235--39852259	11	2.3	11	100	0	50	32	0	28	40	1.57
39855874--39855942	34	2.0	34	100	0	138	44	17	8	28	1.78
39857464--39857667	42	4.8	43	78	8	184	29	29	16	24	1.97
39857465--39857625	85	1.9	86	84	3	218	28	31	18	22	1.97
39861926--39861952	14	1.9	14	100	0	54	7	55	0	37	1.28
39862690--39862740	22	2.3	22	89	0	84	41	41	0	17	1.50
39863256--39863507	41	6.1	41	83	4	301	30	30	20	18	1.96
39863256--39863507	82	3.0	83	85	5	332	30	30	20	18	1.96
39863256--39863507	123	2.0	125	85	3	339	30	30	20	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216