genome.fa.s15.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  15  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4753119--4753204	40	2.1	40	83	10	104	39	1	0	59	1.05
4756472--4756518	21	2.2	22	92	3	78	21	38	19	21	1.94
4760673--4760703	2	15.5	2	100	0	62	48	0	0	51	1.00
4762817--4762882	29	2.4	27	82	12	80	27	7	4	60	1.43
4762817--4762882	28	2.4	28	82	12	82	27	7	4	60	1.43
4770629--4770690	3	20.3	3	83	3	79	62	0	3	33	1.11
4771143--4771181	15	2.6	15	87	0	60	41	12	15	30	1.85
4779132--4779189	21	2.8	21	77	12	66	44	37	0	17	1.49
4779132--4779194	14	4.5	15	77	15	64	44	36	0	19	1.51
4787507--4787560	24	2.3	23	78	12	56	66	0	0	33	0.92
4792519--4792559	3	13.7	3	100	0	82	0	31	0	68	0.90
4795542--4795567	3	8.7	3	100	0	52	34	30	0	34	1.58
4796854--4796882	5	5.8	5	100	0	58	62	0	0	37	0.96
4799314--4799364	21	2.5	20	84	9	66	39	3	19	37	1.70
4799515--4799563	23	2.1	23	85	7	64	57	0	4	38	1.18
4800033--4800086	27	2.0	26	92	3	90	62	0	1	35	1.06
4801246--4801279	18	1.9	18	88	5	52	29	0	5	64	1.17
4804422--4804668	50	4.8	49	79	4	172	29	22	26	21	1.99
4804541--4804659	49	2.4	49	81	6	143	34	21	23	20	1.97
4807743--4807816	34	2.2	34	82	4	87	21	25	24	28	1.99
4816484--4816780	50	5.8	50	81	6	224	21	27	22	28	1.99
4816546--4816780	100	2.3	102	80	5	251	20	28	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4824738--4824798	30	2.1	30	81	3	70	63	4	4	26	1.35
4838843--4839265	72	5.8	72	81	5	433	38	14	22	24	1.91
4838837--4839190	145	2.4	143	82	5	415	38	14	23	23	1.92
4844518--4844816	41	7.2	40	63	20	105	17	18	27	37	1.93
4844474--4844816	125	2.7	125	96	0	625	16	17	28	37	1.92
4844724--4844879	84	1.9	84	100	0	312	16	17	32	33	1.92
4845880--4845904	13	1.9	13	100	0	50	24	0	36	40	1.55
4845940--4846008	21	3.3	20	79	4	66	8	0	49	42	1.34
4845951--4846008	7	8.3	7	82	0	71	5	0	50	44	1.24
4845949--4846029	21	3.9	21	80	6	76	9	1	48	40	1.44
4846014--4846063	15	3.4	15	75	10	50	26	2	36	36	1.68
4846589--4846615	4	6.8	4	100	0	54	77	0	0	22	0.76
4846906--4846954	23	2.1	23	92	0	80	36	38	0	24	1.56
4846912--4846964	23	2.3	22	84	9	70	35	43	0	20	1.52
4847383--4847422	12	3.3	12	83	13	55	22	7	12	57	1.60
4848617--4848950	43	7.8	44	69	14	196	24	17	27	30	1.97
4848616--4848950	129	2.6	130	87	5	448	25	17	27	30	1.97
4848961--4849101	43	3.3	43	90	2	212	26	26	24	22	2.00
4848704--4848991	129	2.2	128	86	4	357	26	18	25	29	1.98
4848941--4849101	86	1.9	86	82	2	207	27	27	22	21	1.99
4849836--4850363	140	3.9	138	81	8	618	31	21	19	27	1.98
4849970--4850371	126	3.1	126	78	11	443	32	21	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4849836--4850327	265	1.9	265	87	1	736	31	21	19	27	1.97
4850096--4850363	139	1.9	139	88	1	403	32	20	18	27	1.96
4852248--4852278	5	6.0	5	96	3	53	58	0	22	19	1.40
4853073--4853169	11	9.4	11	68	28	61	57	0	3	39	1.14
4853112--4853145	17	2.0	17	88	0	50	64	0	0	35	0.94
4853688--4854370	140	5.0	140	82	7	826	31	22	18	26	1.97
4853684--4854370	266	2.5	272	84	4	861	31	22	19	26	1.97
4859023--4859061	5	8.0	5	97	2	71	58	0	0	41	0.98
4861757--4861801	15	3.4	12	82	14	54	55	4	2	37	1.32
4862156--4862200	3	14.7	3	90	4	72	64	0	2	33	1.06
4862932--4862963	16	1.9	17	93	6	57	0	15	3	81	0.82
4867206--4867246	21	2.0	21	90	0	64	29	21	29	19	1.98
4874151--4874183	11	3.0	11	95	0	57	39	18	0	42	1.50
4889731--4889786	23	2.5	21	88	11	85	33	0	0	66	0.92
4889729--4889788	22	2.8	20	79	18	68	35	0	0	65	0.93
4892654--4892684	12	2.6	12	89	0	53	64	0	29	6	1.18
4907094--4907147	21	2.6	21	90	0	81	29	9	31	29	1.88
4909102--4909135	16	2.2	16	89	5	52	58	14	2	23	1.50
4912535--4912590	21	2.7	21	82	0	67	28	8	35	26	1.87
4915642--4915688	18	2.6	19	83	6	62	40	0	59	0	0.97
4915642--4915679	6	6.2	6	90	6	58	39	0	60	0	0.97
4922276--4922315	19	2.0	21	85	9	57	62	10	10	17	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4931244--4931376	59	2.3	57	84	8	164	30	9	1	58	1.38
4931306--4931453	69	2.2	68	80	1	161	27	8	4	59	1.47
4931369--4931538	77	2.2	77	83	4	200	26	8	4	61	1.43
4931513--4931543	4	7.8	4	92	0	53	22	3	0	74	0.96
4934224--4934279	28	1.9	30	85	7	80	25	12	7	55	1.62
4937167--4937236	27	2.5	28	84	11	81	38	18	1	41	1.60
4937694--4937754	23	2.5	22	82	15	68	47	11	1	39	1.50
4941785--4941868	41	2.0	42	82	11	102	50	5	4	39	1.48
4941983--4942051	31	2.2	31	80	19	81	52	2	0	44	1.16
4945602--4945636	18	1.9	18	94	0	61	34	28	25	11	1.91
4947099--4947204	9	11.9	9	70	13	67	57	0	2	38	1.20
4947136--4947210	10	7.9	10	70	15	52	60	1	4	34	1.24
4947690--4947722	15	2.1	17	88	11	52	24	0	6	69	1.10
4954374--4954433	31	1.9	32	89	3	95	43	11	10	35	1.75
4955268--4955343	31	2.5	31	95	0	134	42	11	17	28	1.84
4956250--4956322	36	2.0	36	86	5	103	27	13	31	27	1.94
4958153--4958216	31	2.1	31	82	11	78	37	0	0	62	0.95
4972230--4972757	97	5.4	97	97	0	1011	41	13	7	38	1.72
4972795--4972839	23	2.0	23	82	8	56	44	6	2	46	1.42
4972846--4972883	11	3.5	11	100	0	76	47	26	0	26	1.52
4975910--4976118	92	2.3	91	85	5	260	45	4	4	45	1.42
4976172--4976382	66	3.4	64	69	21	194	41	3	6	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4976134--4976426	120	2.4	120	92	3	484	43	3	4	49	1.39
4976270--4976310	15	2.8	15	82	10	50	43	0	2	53	1.13
4976388--4976429	15	2.7	16	82	14	52	45	0	2	52	1.13
4976379--4976420	15	2.9	15	82	10	52	47	0	0	52	1.00
4976363--4976649	153	1.9	153	94	0	502	47	3	4	44	1.40
4980254--4980280	2	13.5	2	100	0	54	0	0	48	51	1.00
4982243--4982293	20	2.6	19	79	11	59	33	0	9	56	1.32
4998938--4998978	21	1.9	21	85	5	55	31	2	0	65	1.05
5003717--5003756	19	2.1	19	95	0	71	0	45	7	47	1.31
5005424--5005462	18	2.2	18	100	0	78	43	0	10	46	1.37
5005429--5005468	18	2.2	18	90	0	62	50	0	10	40	1.36
5006086--5006125	20	2.0	20	90	0	62	50	12	10	27	1.72
5006074--5006140	34	1.9	35	90	3	109	46	13	8	31	1.74
5006109--5006148	14	2.9	14	84	0	53	42	17	7	32	1.77
5006607--5006804	72	2.7	71	86	4	272	30	17	17	34	1.93
5013541--5013584	23	1.9	23	86	9	54	54	4	2	38	1.33
5016464--5016505	21	2.1	19	86	8	57	52	7	2	38	1.42
5018872--5019696	154	5.4	151	85	8	1101	30	10	8	51	1.65
5018870--5019696	308	2.7	307	92	2	1347	29	10	8	51	1.65
5025698--5025726	4	7.2	4	100	0	58	51	0	0	48	1.00
5026934--5027004	35	2.0	35	89	5	108	33	9	9	46	1.70
5031436--5031772	160	2.1	159	94	0	584	23	16	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5040048--5040127	42	2.0	41	87	5	117	41	11	13	33	1.80
5040391--5040438	20	2.5	20	82	3	53	20	2	33	43	1.64
5041445--5041494	24	2.1	24	92	0	82	52	10	2	36	1.47
5042624--5042721	33	2.9	33	84	7	108	36	22	10	30	1.87
5042938--5043093	41	3.8	41	89	6	226	27	22	21	28	1.99
5050553--5050708	41	3.8	41	89	6	226	27	22	21	28	1.99
5057871--5057968	33	2.9	33	84	7	108	36	22	10	30	1.87
5058187--5058342	41	3.8	41	89	6	226	27	22	21	28	1.99
5073115--5073165	25	2.0	25	96	0	93	23	41	11	23	1.87
5073852--5073881	15	2.0	15	100	0	60	33	13	13	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216