genome.fa.s15.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  129  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41005245--41005440	81	2.4	81	82	5	238	17	19	19	42	1.89
41011229--41011261	18	1.9	17	88	11	50	30	0	12	57	1.35
41011329--41011353	12	2.1	12	100	0	50	24	24	0	52	1.48
41013793--41013898	50	2.1	50	82	3	124	30	18	29	21	1.97
41017387--41017593	27	7.7	27	77	10	140	19	17	18	44	1.87
41017387--41017584	80	2.5	80	74	13	190	19	18	18	43	1.88
41017388--41017593	53	3.9	52	77	6	180	18	17	18	44	1.87
41019040--41019088	26	1.9	25	95	0	80	38	16	20	24	1.92
41019279--41019622	27	12.9	26	81	6	345	20	17	19	42	1.89
41019279--41019622	53	6.5	51	79	11	347	20	17	19	42	1.89
41033129--41033176	18	2.8	17	81	18	55	14	41	0	43	1.45
41041840--41041873	16	2.1	16	88	0	50	23	5	11	58	1.55
41043630--41044862	613	2.0	613	97	0	2349	28	22	16	32	1.96
41057168--41057309	40	3.5	40	80	9	155	35	17	26	19	1.94
41061227--41061317	37	2.5	37	83	7	105	21	14	26	37	1.92
41065297--41065541	51	4.8	51	82	6	268	30	25	17	26	1.98
41067543--41067604	31	2.1	30	82	17	76	29	17	8	45	1.77
41067823--41067887	24	2.6	25	80	9	80	33	23	23	20	1.97
41085407--41085436	15	1.9	16	93	6	53	46	0	13	40	1.43
41096455--41096586	41	3.2	40	77	10	122	26	12	26	34	1.93
41097902--41097956	25	2.2	26	81	15	71	45	0	21	32	1.52
41100050--41100285	27	8.7	27	82	0	256	41	20	14	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100050--41100285	81	2.9	80	87	2	321	41	20	14	23	1.89
41101299--41101350	17	2.9	18	74	5	52	44	3	23	28	1.71
41105382--41105427	21	2.2	21	88	0	65	47	6	21	23	1.74
41116228--41116268	10	4.0	10	83	3	55	82	2	14	0	0.76
41116229--41116269	15	2.6	17	81	14	52	85	2	12	0	0.70
41149754--41149811	9	6.4	9	83	0	80	37	25	12	24	1.90
41149754--41149811	18	3.2	18	87	0	89	37	25	12	24	1.90
41152903--41152939	18	2.1	17	90	5	56	54	8	0	37	1.30
41153310--41153343	4	8.8	4	87	6	52	2	23	0	73	0.97
41153310--41153343	15	2.2	16	89	5	52	2	23	0	73	0.97
41160294--41160366	36	2.0	36	91	0	119	31	31	0	36	1.58
41161773--41161799	6	4.5	6	100	0	54	14	0	0	85	0.61
41162230--41162281	17	3.1	17	77	8	52	38	11	0	50	1.39
41162722--41162944	48	4.7	46	80	10	236	28	19	15	36	1.93
41162722--41162945	24	9.5	24	71	9	147	28	19	15	36	1.93
41162936--41163034	30	3.4	30	80	2	112	29	26	18	26	1.98
41162953--41163033	15	5.4	15	77	0	81	28	24	18	28	1.98
41175087--41175158	26	2.9	25	72	19	71	26	1	22	50	1.58
41184745--41184815	27	2.6	27	75	4	63	25	16	26	30	1.97
41189042--41189111	25	2.8	25	74	8	79	22	18	27	31	1.97
41196257--41196345	25	3.6	25	78	0	97	21	20	23	34	1.96
41197906--41198146	40	6.0	40	86	0	329	35	17	30	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41197978--41198119	20	7.1	19	63	20	58	33	18	32	16	1.93
41197906--41198146	120	2.0	120	89	1	367	35	17	30	17	1.93
41210576--41210742	27	6.2	27	87	0	199	43	19	14	22	1.88
41210576--41210727	81	1.9	81	89	5	236	44	19	13	23	1.86
41210576--41210747	54	3.2	54	86	3	238	42	19	15	22	1.89
41210585--41210744	81	2.0	81	86	2	223	43	19	16	21	1.88
41210929--41211003	26	2.9	26	87	0	96	21	14	20	44	1.87
41211112--41211187	27	2.8	27	97	0	143	25	23	26	25	2.00
41212825--41212857	17	2.0	17	88	5	50	36	0	6	57	1.23
41213581--41213612	3	10.7	3	100	0	64	65	0	34	0	0.93
41224795--41224849	24	2.2	26	78	15	62	27	7	7	58	1.52
41231051--41231085	13	2.6	13	86	4	52	60	5	5	28	1.43
41239133--41239353	27	8.2	27	82	1	183	35	19	20	24	1.96
41239133--41239353	81	2.7	81	81	2	239	35	19	20	24	1.96
41239580--41239720	32	4.4	32	82	0	158	20	19	19	39	1.92
41240771--41240805	3	11.7	3	93	0	61	65	2	0	31	1.07
41242648--41242742	47	2.0	47	97	0	181	33	12	24	29	1.92
41250511--41250583	22	3.3	22	71	3	65	28	4	31	35	1.76
41259822--41260032	50	4.2	50	93	2	361	25	21	31	21	1.98
41262749--41262790	21	2.0	20	82	13	50	23	45	9	21	1.81
41263615--41263662	3	16.0	3	91	0	78	66	0	33	0	0.92
41264873--41264898	9	2.9	9	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41264965--41265030	31	2.2	30	84	13	82	43	0	0	56	0.99
41266917--41266962	23	2.1	22	92	8	76	30	6	4	58	1.43
41267391--41267432	19	2.2	20	82	4	50	30	7	11	50	1.66
41271639--41271682	17	2.6	17	80	16	56	81	4	13	0	0.83
41273082--41273308	44	5.2	44	61	8	111	27	28	22	21	1.99
41272858--41273398	263	2.1	264	88	1	800	27	28	22	21	1.99
41272858--41273434	88	6.6	88	88	1	771	27	28	23	20	1.99
41273434--41273788	44	8.2	44	77	9	318	27	17	24	30	1.97
41273434--41273788	88	4.1	87	79	7	355	27	17	24	30	1.97
41273474--41273788	126	2.5	126	84	6	402	27	17	25	29	1.98
41273518--41273675	82	1.9	82	84	5	212	27	17	25	29	1.97
41273434--41273744	170	1.8	170	83	2	419	27	17	24	31	1.97
41274112--41274231	44	2.8	44	80	3	118	30	20	21	27	1.98
41274114--41274367	128	2.0	129	81	3	298	30	20	21	28	1.98
41276509--41276540	16	1.9	17	93	6	57	37	21	0	40	1.54
41276699--41276871	43	4.1	43	78	12	187	32	27	17	22	1.96
41276701--41276855	84	1.8	84	83	8	208	30	27	18	23	1.98
41282183--41282217	14	2.5	14	90	0	52	40	5	0	54	1.24
41282191--41282218	14	2.0	14	100	0	56	35	7	0	57	1.26
41287453--41287524	35	2.1	35	100	0	144	45	22	5	26	1.74
41287932--41288173	50	4.7	50	77	4	191	23	26	21	28	1.99
41298313--41298360	10	4.6	10	82	10	51	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41305100--41305139	15	2.7	15	88	0	53	30	15	10	45	1.78
41306182--41306221	21	2.0	20	85	5	53	42	22	20	15	1.88
41306249--41306306	21	2.8	21	73	2	55	36	15	17	31	1.91
41310369--41310444	34	2.2	34	92	0	125	47	14	5	32	1.67
41314553--41314597	19	2.4	18	88	3	63	26	11	4	57	1.52
41325139--41325194	3	18.7	3	96	0	103	67	0	32	0	0.91
41327725--41327784	24	2.5	24	78	5	59	15	5	5	75	1.15
41329497--41329541	22	2.0	22	83	8	56	40	11	0	48	1.39
41334342--41334448	50	2.1	50	85	0	151	20	29	23	26	1.99
41344644--41344688	21	2.1	22	87	4	65	57	0	2	40	1.11
41350089--41350128	15	2.7	15	88	0	53	30	15	10	45	1.78
41351345--41351812	233	2.0	233	98	0	900	39	16	11	32	1.85
41361628--41361669	22	1.9	22	85	9	59	38	42	4	14	1.66
41371781--41371806	12	2.2	12	100	0	52	7	15	30	46	1.74
41371890--41372029	72	2.0	71	85	1	190	27	22	23	26	1.99
41372075--41372227	72	2.1	72	91	0	243	27	22	24	25	2.00
41372121--41372357	113	2.1	113	80	7	268	25	18	25	29	1.98
41371931--41372337	185	2.2	185	82	5	509	25	19	26	28	1.99
41372592--41372675	38	2.2	36	83	8	98	21	2	36	39	1.66
41372818--41372869	20	2.6	20	85	8	70	15	0	38	46	1.46
41373213--41373245	16	2.1	16	88	5	50	60	6	0	33	1.21
41373492--41373795	148	2.1	148	87	1	439	25	14	21	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373961--41373988	14	2.0	14	100	0	56	28	50	0	21	1.49
41377978--41378028	21	2.4	21	87	6	68	33	13	47	5	1.67
41378489--41378776	84	3.5	82	82	4	319	25	19	21	32	1.97
41378400--41378773	42	8.9	40	76	8	259	26	20	22	30	1.98
41383585--41383768	79	2.3	80	84	5	232	26	27	21	24	1.99
41383552--41383766	118	1.8	118	82	6	274	25	27	20	26	1.99
41383566--41383768	39	5.1	40	84	7	236	25	27	21	25	1.99
41387764--41387988	110	2.0	111	94	2	400	24	22	17	35	1.96
41391188--41391333	40	3.7	40	84	7	181	26	27	22	23	2.00
41393411--41393475	31	2.1	31	91	0	103	41	29	9	20	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216