genome.fa.s15.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  173  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54200908--54201046	44	3.2	44	65	11	113	25	28	24	22	2.00
54200858--54201243	88	4.4	88	85	0	495	25	25	26	23	2.00
54201269--54201680	44	9.5	45	73	7	137	28	20	23	27	1.99
54201443--54201546	40	2.6	40	89	3	147	27	22	20	29	1.98
54201613--54201719	44	2.6	40	83	8	117	29	21	18	29	1.97
54210648--54210700	8	6.6	8	86	8	56	64	3	0	32	1.12
54212443--54212517	38	2.0	38	97	0	141	26	20	10	42	1.84
54213891--54213968	22	3.5	22	75	10	70	66	3	5	24	1.29
54215771--54215798	14	2.0	14	100	0	56	14	0	7	78	0.95
54216595--54216636	19	2.2	20	91	4	68	30	4	7	57	1.47
54228100--54228142	19	2.3	19	84	8	52	67	2	13	16	1.33
54231091--54231126	16	2.2	16	90	9	56	61	0	0	38	0.96
54231237--54231330	29	3.2	29	78	11	93	58	5	1	35	1.28
54233010--54233343	45	7.6	45	74	10	201	25	24	20	29	1.99
54233143--54233470	44	7.5	44	72	14	189	29	22	18	29	1.97
54233042--54233497	217	2.1	218	86	3	632	26	24	18	29	1.98
54233049--54233422	173	2.2	173	79	8	397	27	24	18	29	1.98
54237783--54237825	18	2.4	18	88	0	59	41	44	2	11	1.53
54237947--54238004	9	6.6	9	92	2	82	24	10	24	41	1.86
54237947--54238004	18	3.3	18	95	2	100	24	10	24	41	1.86
54237939--54238004	27	2.5	26	92	2	105	24	9	24	42	1.83
54246236--54246265	4	7.2	4	92	7	51	70	3	0	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54247353--54247382	3	10.0	3	100	0	60	33	0	0	66	0.92
54247612--54247655	22	2.0	23	86	4	63	38	9	0	52	1.33
54248843--54248928	36	2.4	35	94	1	145	58	4	2	34	1.32
54248908--54248986	27	3.0	27	74	17	76	62	3	1	32	1.21
54251373--54251415	23	1.9	22	90	4	68	55	2	6	34	1.39
54252108--54252165	22	2.6	22	81	7	64	41	17	5	36	1.72
54255223--54255385	24	6.6	25	68	12	97	37	21	25	15	1.93
54259832--54259880	22	2.2	22	77	0	53	22	12	6	59	1.55
54262536--54262574	20	2.0	20	85	5	53	56	5	7	30	1.49
54263047--54263085	20	2.0	20	89	0	60	43	2	2	51	1.29
54266101--54266140	20	2.0	20	90	0	62	25	10	2	62	1.39
54268416--54268450	13	2.8	12	87	12	52	80	0	0	20	0.72
54268416--54268450	6	5.5	6	90	10	52	80	0	0	20	0.72
54269737--54269780	23	1.9	23	85	0	61	13	22	36	27	1.92
54275660--54275699	14	2.9	14	88	3	55	20	2	0	77	0.88
54288730--54288780	24	2.1	24	96	0	93	29	11	29	29	1.92
54289125--54289579	51	9.2	50	78	12	415	28	16	24	30	1.97
54289071--54289579	97	5.2	97	78	11	475	28	16	24	29	1.97
54289224--54289577	147	2.4	147	91	0	564	27	16	25	29	1.97
54289371--54289552	96	1.9	97	87	3	269	28	18	24	29	1.98
54290338--54290374	14	2.7	15	88	12	53	24	5	0	70	1.08
54294632--54294723	47	2.0	47	88	0	139	57	15	18	8	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54296014--54296157	71	2.0	71	87	0	207	25	25	20	29	1.99
54296393--54296531	48	2.9	48	88	2	208	35	20	6	37	1.78
54296783--54296906	49	2.5	48	80	7	126	30	29	12	26	1.93
54310573--54310647	30	2.4	33	82	14	97	33	0	1	65	1.01
54310573--54310618	20	2.4	19	79	13	58	30	0	2	67	1.03
54310611--54310657	24	2.0	24	87	8	69	44	0	0	55	0.99
54314476--54314516	19	2.0	19	86	13	55	43	0	0	56	0.99
54330950--54330984	18	1.9	18	88	0	52	37	2	11	48	1.54
54344298--54344337	14	2.9	14	84	0	53	32	7	17	42	1.77
54344321--54344360	20	2.0	20	90	0	62	27	10	12	50	1.72
54344306--54344372	34	1.9	35	90	3	109	31	8	13	46	1.74
54344300--54344376	14	5.0	15	71	20	52	32	9	15	42	1.78
54344351--54344437	33	2.7	32	76	15	88	27	8	18	45	1.77
54346525--54346575	25	2.0	25	88	0	75	19	1	17	60	1.45
54359253--54359476	72	3.1	72	85	5	292	50	10	2	36	1.49
54359420--54359457	20	2.0	20	89	5	60	57	2	0	39	1.12
54360351--54360409	21	2.7	22	82	12	61	54	3	6	35	1.44
54362940--54362992	18	2.9	17	76	13	52	49	3	3	43	1.38
54362940--54362981	19	2.3	18	84	12	50	47	4	4	42	1.45
54367474--54367507	12	2.8	12	90	0	50	58	5	2	32	1.37
54367474--54367510	15	2.5	15	90	0	56	59	5	2	32	1.34
54368085--54368241	78	2.0	78	100	0	314	35	12	15	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54368529--54368581	27	2.0	27	85	7	74	9	5	39	45	1.60
54369464--54369543	40	2.0	40	100	0	160	42	15	5	37	1.68
54373456--54373517	30	2.1	30	100	0	124	50	19	11	19	1.77
54379121--54379179	30	1.9	31	86	3	84	47	10	16	25	1.78
54385497--54385583	41	2.2	38	83	6	102	33	1	12	52	1.47
54385497--54385583	19	4.4	19	81	8	93	33	1	12	52	1.47
54385691--54385787	27	3.5	27	72	17	83	31	1	13	53	1.46
54385772--54385822	21	2.6	19	87	6	66	29	3	15	50	1.62
54385744--54385920	48	3.9	47	74	19	180	29	1	14	53	1.51
54385762--54385825	19	3.3	19	78	8	74	32	3	14	50	1.58
54385762--54385834	19	3.7	18	71	16	56	31	2	12	53	1.52
54385791--54385892	21	4.8	21	70	19	68	28	0	13	56	1.44
54385736--54385904	86	2.0	87	88	5	254	30	1	14	53	1.51
54385802--54385918	46	2.5	48	88	4	177	31	0	13	53	1.46
54385802--54385923	26	5.1	25	71	20	84	31	0	13	53	1.46
54385962--54386082	60	2.0	59	84	4	154	30	0	14	53	1.47
54386116--54386196	38	2.2	38	95	2	146	54	3	2	39	1.32
54386233--54386274	16	2.7	15	85	7	57	38	2	4	54	1.34
54389379--54389426	22	2.2	21	88	3	69	2	33	2	62	1.18
54389478--54389542	27	2.5	26	85	5	78	20	40	20	20	1.92
54389478--54389551	26	2.8	26	83	6	78	20	36	22	20	1.95
54390437--54390462	12	2.2	12	100	0	52	61	0	7	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54390924--54391021	48	2.0	48	92	0	160	38	11	5	44	1.62
54391689--54391748	16	3.8	16	78	10	61	51	1	0	46	1.10
54393020--54393189	41	4.2	39	69	16	112	21	17	27	34	1.95
54393020--54393164	41	3.5	42	71	11	129	23	17	25	33	1.96
54392994--54393176	82	2.2	80	80	9	217	21	15	26	36	1.94
54394192--54394293	7	13.9	7	73	10	69	22	0	45	31	1.59
54394199--54394293	15	6.4	15	77	9	97	23	1	44	31	1.60
54394192--54394293	29	3.4	29	77	7	98	22	0	45	31	1.59
54398026--54398058	10	3.1	11	86	8	50	33	9	21	36	1.85
54398093--54398184	13	6.9	13	74	18	91	45	9	1	43	1.44
54398093--54398328	40	6.1	38	81	9	230	45	11	1	41	1.47
54398090--54398193	13	7.8	13	73	16	79	44	11	1	42	1.51
54398225--54398314	18	4.9	18	76	14	94	47	12	0	40	1.41
54398207--54398265	31	1.9	31	89	6	93	42	13	0	44	1.44
54398225--54398286	17	3.6	17	84	4	70	46	12	0	40	1.42
54398337--54398650	120	2.6	119	95	1	558	40	7	6	45	1.59
54398693--54399052	9	42.8	9	68	18	181	48	19	1	30	1.59
54398807--54398870	21	3.0	21	78	13	76	43	25	1	29	1.64
54398740--54399046	25	12.9	23	68	19	136	48	19	1	30	1.58
54398741--54399030	34	7.8	34	72	20	163	48	20	1	30	1.56
54398850--54399030	75	2.4	75	99	0	353	48	20	1	30	1.57
54398702--54398968	59	4.7	56	74	15	203	48	19	1	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54398989--54399030	16	2.6	16	92	0	66	50	23	0	26	1.50
54398850--54399030	50	3.6	51	71	15	153	48	20	1	30	1.57
54398964--54399052	41	2.2	41	83	4	108	47	20	2	30	1.62
54404432--54404602	66	2.6	65	85	4	209	40	18	26	13	1.88
54404593--54404685	21	4.4	21	84	0	132	32	16	44	7	1.75
54404593--54404685	42	2.2	42	92	0	150	32	16	44	7	1.75
54405141--54405287	43	3.4	43	78	7	147	25	29	22	21	1.99
54406324--54406459	39	3.5	39	87	2	193	44	21	5	28	1.73
54412713--54412752	21	1.9	21	94	0	71	35	20	7	37	1.81
54413581--54413618	20	1.9	20	84	10	51	44	5	36	13	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216