genome.fa.s15.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  60  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17708332--17708487	82	1.9	81	88	3	233	29	28	15	26	1.96
17711441--17711489	19	2.5	20	80	6	57	42	12	18	26	1.85
17712864--17713142	110	2.6	108	89	2	418	34	19	17	28	1.95
17713221--17713251	15	2.1	15	93	0	53	64	6	9	19	1.45
17713755--17713791	3	12.3	3	100	0	74	67	0	0	32	0.91
17714498--17714533	6	5.8	6	93	6	63	83	2	0	13	0.76
17717625--17717652	13	2.2	13	100	0	56	53	0	14	32	1.41
17720421--17720453	16	2.0	17	88	5	50	57	0	9	33	1.30
17721738--17721941	27	7.6	26	85	4	228	24	23	9	42	1.84
17721730--17721940	81	2.6	81	82	3	264	24	23	9	42	1.84
17724366--17724450	25	3.4	25	79	4	93	21	23	21	34	1.97
17736681--17736735	27	2.0	27	82	13	67	50	1	3	43	1.30
17745434--17745511	25	3.2	24	66	20	70	25	21	11	41	1.87
17754777--17754862	43	2.0	43	95	2	156	24	17	15	43	1.87
17757412--17757508	42	2.3	42	92	0	158	25	27	10	36	1.89
17759165--17759216	9	5.7	9	77	18	54	25	1	0	73	0.94
17764065--17764107	10	4.1	10	82	8	50	6	4	9	79	1.06
17764065--17764124	18	3.2	18	77	15	50	8	5	10	76	1.14
17765291--17765352	11	5.6	11	82	0	79	37	51	0	11	1.38
17766130--17766246	47	2.5	47	74	1	126	22	12	22	42	1.87
17774108--17774143	17	2.1	18	89	5	56	38	19	33	8	1.82
17779735--17779777	18	2.3	19	80	8	52	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17781382--17781433	26	2.0	26	100	0	104	30	7	19	42	1.79
17782622--17782677	23	2.5	22	80	8	67	51	16	7	25	1.69
17784067--17784101	11	3.2	11	95	0	61	28	34	0	37	1.58
17787191--17787256	20	3.3	19	73	14	62	10	27	19	42	1.84
17793683--17793712	16	1.9	16	93	6	53	50	20	0	30	1.49
17796899--17796977	26	3.0	26	81	3	97	43	25	16	15	1.87
17797158--17797272	27	4.3	26	84	6	140	18	17	22	41	1.90
17804288--17804338	26	2.0	26	100	0	102	37	27	23	11	1.90
17804288--17804367	26	3.0	27	85	3	101	36	26	22	15	1.93
17805577--17805658	25	3.3	25	83	10	96	35	21	13	29	1.92
17805592--17805716	50	2.5	51	84	5	157	38	21	12	28	1.89
17805832--17805858	5	5.4	5	100	0	54	37	0	0	62	0.95
17810200--17810261	24	2.5	25	87	7	83	35	20	25	17	1.95
17816165--17816349	101	1.8	102	90	3	302	24	18	26	30	1.98
17816161--17816358	51	3.9	51	77	10	217	25	17	26	29	1.98
17816271--17816351	26	3.2	26	64	22	71	24	16	27	32	1.96
17820467--17820965	150	3.3	150	81	1	554	25	22	13	38	1.91
17820471--17820965	225	2.2	225	82	2	582	25	22	13	38	1.91
17820471--17820967	75	6.6	75	79	0	456	25	22	13	38	1.91
17821730--17821807	36	2.1	36	88	2	111	25	29	19	25	1.98
17821926--17823022	47	22.9	47	96	1	1888	29	29	8	32	1.86
17821926--17823022	335	3.3	335	96	0	2018	29	29	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17826358--17826737	119	3.2	119	91	3	568	24	27	24	23	2.00
17826354--17826744	40	9.8	40	88	5	567	24	28	23	23	2.00
17826354--17826744	79	4.9	80	90	5	567	24	28	23	23	2.00
17827945--17828021	37	2.1	36	88	4	111	25	31	18	24	1.97
17828137--17828554	93	4.5	92	92	4	660	29	30	7	32	1.86
17828137--17828548	47	8.8	47	94	3	681	29	30	8	31	1.86
17832753--17832804	3	17.3	3	100	0	104	32	0	0	67	0.91
17839226--17839450	41	5.5	41	84	4	258	34	18	28	18	1.95
17840208--17840251	16	2.8	15	83	10	52	25	9	0	65	1.21
17842526--17842576	23	2.2	23	89	0	75	43	21	7	27	1.80
17863787--17863873	30	2.9	30	88	6	115	28	25	27	18	1.98
17863980--17864081	26	3.9	26	88	0	141	36	21	23	18	1.95
17864000--17864107	52	2.1	52	80	3	119	35	20	23	21	1.96
17864255--17864604	27	13.0	27	86	4	388	20	19	19	40	1.91
17864256--17864615	81	4.4	81	84	3	438	20	19	18	41	1.91
17866165--17866227	18	3.3	19	68	16	58	33	14	31	20	1.92
17866130--17866260	39	3.4	39	84	3	174	34	15	27	22	1.94
17868437--17868467	12	2.6	12	100	0	62	16	16	6	61	1.54
17870836--17870877	22	2.0	22	85	4	59	42	14	0	42	1.45
17870893--17870942	26	2.0	26	88	4	75	38	12	8	42	1.71
17875943--17875991	16	3.3	16	67	21	52	61	4	8	26	1.42
17878473--17878502	6	4.8	6	92	8	51	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17878473--17878502	13	2.4	13	94	5	53	0	16	0	83	0.65
17879259--17879305	10	4.6	10	77	12	51	40	0	2	57	1.11
17879259--17879309	20	2.5	20	83	6	66	41	0	1	56	1.10
17882960--17883084	50	2.5	50	82	2	144	21	30	21	26	1.98
17882994--17883124	50	2.5	50	83	7	154	24	32	19	24	1.98
17886034--17886192	41	3.9	41	79	1	158	21	18	27	32	1.97
17886539--17886580	15	2.9	15	89	3	59	28	0	33	38	1.58
17886539--17886585	14	3.3	15	85	8	62	27	0	31	40	1.57
17886580--17886635	14	4.0	14	81	6	69	19	0	44	35	1.51
17886572--17886661	21	4.3	20	75	9	56	24	1	40	34	1.63
17886842--17886879	14	2.7	15	88	12	62	31	0	26	42	1.56
17886866--17886943	21	3.7	21	71	10	61	28	0	35	35	1.58
17886898--17886931	14	2.4	14	90	9	52	26	0	44	29	1.55
17886919--17887404	160	3.0	160	99	0	965	36	2	18	42	1.64
17889143--17889181	20	1.9	21	84	5	53	30	15	10	43	1.80
17891651--17891688	14	2.8	13	92	7	67	36	10	5	47	1.61
17894313--17894343	15	2.1	15	100	0	62	54	6	12	25	1.62
17898129--17898339	34	6.1	34	83	4	244	41	16	22	19	1.90
17898141--17898340	69	2.9	68	84	3	249	41	17	22	19	1.90
17898129--17898339	103	2.0	103	92	0	350	41	16	22	19	1.90
17898577--17898614	14	2.8	13	84	7	58	34	10	7	47	1.67
17900758--17900900	43	3.3	43	81	5	171	23	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17900819--17900921	44	2.3	45	78	9	113	30	20	18	31	1.96
17905911--17906056	50	2.8	50	80	6	139	23	30	18	27	1.98
17924018--17924072	26	2.1	26	96	0	101	38	20	18	23	1.93
17924235--17924443	27	7.7	27	80	7	212	19	14	22	43	1.88
17924235--17924443	54	3.9	54	84	2	260	19	14	22	43	1.88
17924235--17924443	81	2.6	80	86	1	274	19	14	22	43	1.88
17944806--17944929	37	3.4	37	78	2	133	37	28	16	17	1.91
17949742--17949814	23	3.1	23	71	13	60	42	16	10	30	1.82
17950003--17950055	9	5.7	9	82	8	70	20	3	1	73	1.08
17950003--17950055	20	2.8	18	83	10	70	20	3	1	73	1.08
17950939--17951029	11	8.5	11	69	20	52	45	1	29	24	1.61
17960138--17960190	24	2.1	26	82	6	65	69	11	5	13	1.34
17962251--17962487	87	2.7	87	92	0	375	29	22	24	24	1.99
17962741--17962862	44	2.8	44	81	2	138	28	15	22	33	1.94
17968700--17968739	19	2.1	19	85	0	53	5	35	2	57	1.34
17969246--17969648	27	15.0	27	85	1	425	41	20	18	19	1.90
17969802--17969869	26	2.6	26	80	2	73	17	20	25	36	1.94
17969827--17969899	26	2.8	26	82	0	83	15	20	24	39	1.91
17970012--17970069	27	2.1	27	84	6	73	24	24	24	27	2.00
17970536--17970577	20	2.1	20	95	0	75	45	11	16	26	1.82
17975293--17975327	18	1.9	18	88	11	54	34	14	8	42	1.76
17977938--17978527	298	2.0	298	92	0	991	29	19	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17981790--17981859	29	2.4	29	87	0	104	37	8	27	27	1.86
17981848--17982067	30	7.4	30	74	8	119	40	13	24	20	1.89
17981961--17982067	30	3.6	30	83	0	142	44	12	23	19	1.84
17981936--17982077	60	2.4	59	75	9	142	42	12	22	21	1.87
17985583--17985615	17	1.9	17	93	0	57	57	3	12	27	1.49
17986052--17986112	21	3.0	20	79	13	63	29	34	3	32	1.74
17986062--17986114	18	2.9	18	80	5	63	28	32	3	35	1.75
17989928--17990123	51	3.9	51	76	7	175	29	14	24	31	1.95
17989927--17990111	101	1.8	102	83	1	246	28	15	25	31	1.95
17995584--17996175	296	2.0	296	91	0	970	35	13	21	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216