genome.fa.s15.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  127  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40220926--40220974	23	2.1	23	100	0	98	32	16	18	32	1.93
40220999--40221030	13	2.6	12	90	9	55	81	0	9	9	0.88
40223177--40223255	13	6.1	13	83	0	104	32	7	24	35	1.83
40227669--40227727	25	2.4	25	88	0	82	23	25	16	33	1.96
40229248--40229280	15	2.2	15	100	0	66	24	6	21	48	1.72
40234748--40234793	23	2.1	21	92	8	74	43	23	0	32	1.54
40237987--40238030	3	14.7	3	95	0	79	34	2	0	63	1.07
40242396--40242448	23	2.3	23	90	0	79	30	24	18	26	1.98
40245000--40249126	824	5.0	825	97	0	7407	23	14	21	40	1.91
40253972--40254006	12	2.9	12	91	0	52	0	37	22	40	1.55
40275454--40275644	51	3.8	50	72	10	174	24	17	27	31	1.97
40279740--40280712	43	22.7	43	73	5	635	38	20	15	26	1.91
40279742--40280712	86	11.3	86	77	5	793	38	19	15	26	1.91
40283589--40283673	30	2.8	30	94	0	152	21	42	0	36	1.53
40294395--40294451	26	2.1	27	87	3	80	43	17	14	24	1.86
40296474--40296503	15	1.9	15	93	6	51	40	0	0	60	0.97
40303205--40303298	37	2.5	38	77	1	100	24	13	18	43	1.86
40305286--40305363	33	2.4	33	91	0	129	15	7	34	42	1.75
40309996--40310088	37	2.5	37	80	3	98	31	15	13	39	1.86
40310759--40310814	22	2.5	23	82	5	69	41	16	7	35	1.75
40319721--40319826	20	5.3	20	68	0	59	34	16	32	16	1.91
40319720--40319921	40	5.1	40	85	0	262	32	17	31	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40319720--40319921	80	2.5	80	88	0	298	32	17	31	18	1.94
40319741--40319885	20	7.2	20	68	14	93	31	15	33	20	1.93
40323350--40324291	469	2.0	469	98	0	1830	33	21	17	28	1.95
40327778--40327873	25	3.8	25	83	5	115	35	19	22	21	1.96
40332688--40332721	3	11.3	3	93	0	59	70	0	29	0	0.87
40334857--40334909	26	2.0	26	100	0	106	39	0	11	49	1.39
40334863--40334918	26	2.2	26	86	0	76	44	3	10	41	1.56
40335070--40335117	23	2.0	23	88	4	69	52	0	10	37	1.36
40335983--40336023	22	1.9	21	85	5	55	51	0	0	48	1.00
40338903--40338933	11	2.8	11	90	0	53	19	29	0	51	1.47
40338896--40338948	22	2.4	21	82	17	63	24	30	0	45	1.54
40340150--40340175	7	3.7	7	100	0	52	26	0	15	57	1.38
40340757--40340796	18	2.2	18	95	0	71	22	30	7	40	1.81
40341215--40341302	45	2.0	45	93	0	149	37	0	11	51	1.38
40341270--40341445	25	7.3	25	82	11	233	41	0	14	43	1.46
40341277--40341442	24	7.0	24	78	13	191	42	0	15	42	1.46
40341232--40341479	94	2.6	93	74	11	288	40	0	14	44	1.45
40341323--40341479	69	2.3	70	96	1	289	39	0	15	45	1.46
40343827--40344051	123	1.8	123	93	0	387	33	23	16	26	1.95
40345543--40345638	36	2.6	36	79	14	106	41	1	26	31	1.62
40347511--40347540	11	2.9	10	90	9	51	60	26	0	13	1.34
40348417--40348477	20	3.0	20	85	4	77	42	22	26	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40352980--40353008	14	2.0	15	93	6	51	75	3	0	20	0.94
40353721--40353842	44	2.8	44	83	2	147	31	24	16	27	1.96
40353833--40354317	128	3.8	128	93	0	817	25	24	20	30	1.98
40356417--40356452	15	2.4	15	90	0	54	13	8	5	72	1.27
40356486--40356522	19	1.9	19	88	0	56	13	0	5	81	0.86
40356484--40356514	13	2.4	13	94	0	53	16	0	3	80	0.83
40363473--40363521	26	2.0	25	84	8	64	26	18	4	51	1.64
40364203--40364228	8	3.2	8	100	0	52	53	11	0	34	1.37
40368017--40368135	23	5.2	23	78	9	127	31	25	19	24	1.98
40368024--40368138	46	2.5	46	92	0	194	30	24	20	24	1.99
40368364--40368402	18	2.2	17	86	13	53	43	23	0	33	1.54
40369782--40369816	13	2.7	13	91	8	54	40	5	0	54	1.24
40371723--40371774	26	2.0	26	92	0	86	15	21	34	28	1.94
40371612--40371762	72	2.1	72	91	2	243	23	16	29	30	1.96
40378355--40378506	71	2.1	72	92	1	252	23	17	29	30	1.97
40381273--40381414	43	3.4	41	79	13	155	21	15	26	36	1.93
40381273--40381422	42	3.6	43	79	10	157	21	17	26	35	1.95
40383338--40383395	26	2.2	27	78	3	64	53	6	10	29	1.61
40386270--40386370	40	2.6	38	85	3	130	50	8	3	36	1.52
40388460--40388517	23	2.4	25	80	16	68	34	0	1	63	1.04
40388483--40388538	15	3.7	15	84	15	80	32	0	0	67	0.91
40390496--40391106	307	2.0	307	82	3	755	29	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40393212--40393262	19	2.7	18	82	14	59	1	19	0	78	0.85
40394227--40394368	69	2.1	69	100	0	284	31	26	10	31	1.90
40413336--40413395	30	1.9	31	83	6	77	16	43	1	38	1.58
40415124--40415149	3	8.7	3	100	0	52	34	0	30	34	1.58
40421577--40421615	18	2.3	17	86	8	53	41	7	15	35	1.76
40422585--40422633	24	2.0	24	96	0	89	24	53	0	22	1.47
40424789--40424889	27	3.8	27	76	7	89	29	12	31	25	1.93
40429387--40429504	40	3.0	39	74	6	112	36	15	21	27	1.93
40429543--40429824	41	6.9	41	79	4	318	21	15	30	31	1.95
40429591--40429817	124	1.8	125	88	0	348	22	14	29	33	1.94
40430249--40430309	16	4.1	15	68	16	54	19	0	39	40	1.52
40431677--40431730	20	2.7	20	76	0	54	51	1	0	46	1.11
40432055--40432079	6	4.2	6	100	0	50	16	32	36	16	1.90
40433250--40433303	26	2.1	26	96	0	99	46	7	22	24	1.77
40435556--40435594	21	2.0	21	85	10	55	28	5	5	61	1.39
40439535--40439590	23	2.4	24	82	8	71	42	0	3	53	1.18
40439670--40439767	43	2.3	43	84	5	128	25	22	22	29	1.99
40441553--40441584	3	10.7	3	100	0	64	0	34	0	65	0.93
40446804--40446860	17	3.4	17	73	9	53	19	5	3	71	1.19
40453419--40453479	32	1.9	32	86	0	86	55	9	6	27	1.57
40456341--40456742	82	5.0	82	86	3	501	47	10	11	30	1.74
40456341--40456742	159	2.5	162	84	4	510	47	10	11	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40456896--40457007	50	2.3	50	83	6	131	53	7	3	35	1.46
40460308--40460340	17	2.0	17	88	5	50	21	6	0	72	1.05
40460317--40460341	13	1.9	13	100	0	50	16	4	0	80	0.87
40461755--40461882	46	2.8	45	86	4	166	35	10	25	28	1.90
40468606--40468733	46	2.8	45	88	4	175	35	10	25	28	1.89
40471339--40471441	51	2.0	51	98	0	197	34	20	15	29	1.93
40483805--40483847	22	1.9	23	85	4	61	55	0	2	41	1.12
40486675--40486699	11	2.3	11	100	0	50	36	8	0	56	1.29
40488359--40488420	23	2.7	22	75	5	61	59	3	3	33	1.29
40489911--40490197	85	3.2	85	73	14	247	30	19	18	31	1.96
40489907--40490276	181	2.0	181	86	2	510	29	20	17	32	1.96
40490084--40490203	41	2.8	42	77	6	118	30	20	17	32	1.95
40490189--40490363	87	2.0	87	100	0	350	30	20	15	33	1.94
40490298--40490775	44	11.0	44	74	3	394	28	20	19	31	1.97
40490312--40490559	129	1.9	130	81	2	302	29	19	18	31	1.96
40491981--40492111	51	2.6	50	83	1	154	10	27	20	41	1.85
40491987--40492118	50	2.6	51	84	1	158	10	28	20	40	1.86
40501722--40501784	32	2.0	32	83	0	81	42	6	6	44	1.55
40502121--40502171	25	2.0	25	100	0	102	41	3	15	39	1.66
40508655--40508997	51	6.8	50	76	10	306	30	25	15	28	1.96
40508655--40508997	102	3.4	102	83	8	400	30	25	15	28	1.96
40508911--40508993	26	3.2	26	65	21	66	32	25	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40508656--40508996	153	2.3	149	77	8	341	30	26	14	28	1.95
40515763--40515796	10	3.4	10	91	0	50	76	2	14	5	1.09
40515770--40515815	15	3.1	15	76	14	51	71	2	19	6	1.18
40515821--40515845	11	2.3	11	100	0	50	48	8	44	0	1.32
40516503--40516555	12	4.4	12	95	0	88	35	0	7	56	1.28
40516501--40516555	6	9.2	6	85	0	74	36	0	9	54	1.32
40516710--40516758	23	2.0	26	88	11	77	48	0	20	30	1.50
40523472--40523505	10	3.4	10	91	0	50	76	2	14	5	1.09
40524210--40524258	6	8.2	6	88	0	62	36	0	8	55	1.30
40524210--40524258	18	2.7	18	93	0	80	36	0	8	55	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216