genome.fa.s15.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  151  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47690519--47690563	16	2.8	16	83	10	56	48	0	2	48	1.13
47690690--47690727	16	2.4	16	86	0	58	28	34	2	34	1.71
47693206--47693277	25	2.8	25	79	6	74	31	16	25	26	1.96
47701635--47701755	63	1.9	63	93	0	206	38	20	4	35	1.75
47718057--47718142	40	2.2	40	83	8	104	15	26	17	40	1.89
47721071--47721108	19	2.0	19	85	10	51	23	36	0	39	1.55
47723882--47723951	3	23.3	3	85	0	95	61	1	4	32	1.24
47726803--47726842	14	2.9	15	82	14	50	35	5	12	47	1.63
47728329--47728387	8	7.1	8	77	7	64	15	3	1	79	0.94
47729056--47729104	20	2.2	21	79	17	55	30	6	6	57	1.48
47740488--47740568	42	1.9	42	87	5	119	32	14	29	23	1.95
47740790--47740815	13	2.0	13	100	0	52	23	7	0	69	1.14
47741627--47742245	45	13.7	45	83	2	729	30	16	21	31	1.95
47742233--47742341	44	2.5	44	81	3	121	38	21	15	24	1.92
47743230--47743279	25	2.1	22	89	10	73	12	0	4	84	0.76
47743858--47743898	3	13.7	3	84	0	55	34	7	0	58	1.26
47743858--47743898	12	3.4	12	89	0	64	34	7	0	58	1.26
47743974--47744022	20	2.2	21	79	17	55	30	6	6	57	1.48
47780114--47780148	14	2.5	14	100	0	70	14	42	28	14	1.84
47783291--47783349	27	2.2	27	84	0	73	23	20	13	42	1.88
47783315--47783418	27	3.9	27	83	0	127	25	22	13	39	1.90
47783306--47783426	54	2.2	54	83	4	145	24	20	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47783308--47783426	27	4.4	27	81	0	94	24	21	14	40	1.90
47784832--47784883	25	2.1	25	92	0	86	17	48	13	21	1.81
47787152--47787207	16	3.6	16	87	2	87	37	12	14	35	1.84
47787182--47787228	23	2.0	23	91	0	76	38	14	10	36	1.81
47808374--47808519	40	3.7	40	86	5	199	24	27	21	26	2.00
47810224--47810287	30	2.2	29	81	10	76	29	28	6	35	1.82
47810231--47810287	30	1.9	30	85	3	80	29	24	7	38	1.82
47816141--47816256	24	4.8	24	85	0	142	26	7	21	43	1.79
47816342--47816401	27	2.2	27	85	11	79	15	25	25	35	1.94
47816438--47816576	32	4.3	32	83	0	170	23	20	17	38	1.93
47816422--47816575	64	2.4	64	86	0	218	22	20	18	38	1.93
47816581--47816645	22	3.0	21	77	4	67	16	21	18	43	1.88
47817694--47818073	40	9.5	40	85	0	474	22	30	16	31	1.96
47819127--47819456	27	12.3	27	82	4	294	24	15	16	44	1.85
47819127--47819456	54	6.2	55	78	7	340	24	15	16	44	1.85
47819127--47819455	107	3.1	108	79	5	337	24	14	16	44	1.85
47820376--47820412	17	2.2	16	90	4	56	75	0	21	2	0.92
47822444--47822480	17	2.1	18	90	5	58	13	8	0	78	0.96
47833054--47833234	48	3.8	48	90	0	263	28	21	27	22	1.99
47833054--47833280	96	2.4	96	83	0	283	29	20	26	22	1.98
47833054--47833276	48	4.6	48	87	0	257	29	20	27	22	1.98
47838933--47839131	48	4.1	48	81	1	202	28	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47840198--47840393	43	4.6	43	89	1	295	24	29	18	27	1.98
47840792--47840834	21	2.0	21	86	0	59	2	44	18	34	1.63
47840742--47840904	87	1.9	87	90	2	265	14	25	17	41	1.88
47840797--47840842	21	2.2	21	88	0	65	2	39	19	39	1.64
47841977--47842005	14	2.1	14	100	0	58	48	0	20	31	1.50
47855179--47855223	21	2.1	21	87	0	63	31	26	24	17	1.97
47857106--47857161	16	3.5	16	85	0	76	39	5	25	30	1.78
47857143--47857236	45	2.1	44	84	9	129	35	4	23	37	1.75
47857340--47857468	56	2.3	56	80	9	145	51	5	0	42	1.30
47858307--47858364	29	2.0	29	96	0	107	27	20	18	32	1.97
47858786--47858893	54	2.0	54	96	0	198	41	18	18	21	1.90
47870041--47870142	50	2.0	50	90	3	161	35	19	12	32	1.90
47873998--47874243	41	6.0	41	80	1	199	22	26	14	36	1.93
47877753--47877816	33	1.9	33	100	0	128	34	12	21	31	1.91
47877920--47877958	15	2.6	15	95	0	69	25	20	25	28	1.99
47881089--47881117	12	2.3	13	94	5	51	65	6	6	20	1.40
47882971--47883033	29	2.2	29	100	0	126	38	11	12	38	1.79
47885872--47886070	99	2.0	99	96	0	362	29	14	18	37	1.91
47900297--47900350	19	2.7	22	72	21	64	50	0	1	48	1.11
47910888--47910923	15	2.5	15	86	4	56	33	0	5	61	1.19
47915539--47915602	33	1.9	34	84	9	87	51	1	9	37	1.44
47915614--47915667	21	2.5	22	84	6	65	48	0	9	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47916061--47916112	3	17.0	3	92	4	86	63	0	1	34	1.06
47917875--47918328	45	10.1	45	84	0	595	31	21	16	31	1.95
47924752--47924830	37	2.1	37	90	0	122	25	31	18	24	1.98
47924949--47925419	47	10.1	47	87	6	624	28	29	9	32	1.89
47925299--47925369	35	2.0	35	100	0	142	22	32	11	33	1.90
47925250--47925418	84	2.0	84	98	0	329	27	30	8	33	1.87
47934447--47934510	33	1.9	34	84	9	87	51	1	9	37	1.44
47934522--47934573	23	2.3	23	86	0	68	50	3	7	38	1.50
47934968--47935043	3	24.3	3	76	12	73	61	2	3	31	1.28
47934968--47935018	25	2.0	25	88	7	77	66	0	1	31	1.03
47934968--47935046	11	7.2	11	72	24	69	62	2	3	31	1.27
47945011--47945133	44	2.8	45	80	9	144	29	18	23	28	1.98
47944886--47945264	181	2.1	181	84	3	487	32	17	21	28	1.96
47945076--47945334	129	1.9	136	82	6	325	34	16	20	28	1.95
47946897--47947097	24	8.5	24	69	12	94	34	4	4	55	1.43
47946897--47947075	47	3.8	46	70	12	123	35	5	4	54	1.44
47948234--47948279	23	1.9	25	86	8	69	21	13	8	56	1.63
47953551--47953751	101	2.0	101	95	0	357	46	11	17	23	1.82
47953567--47953772	101	2.0	99	88	2	268	47	11	16	24	1.79
47973431--47973482	20	2.6	20	93	0	86	46	11	7	34	1.69
47975690--47975723	16	2.1	16	94	0	59	35	35	2	26	1.72
47976476--47976526	17	3.0	18	83	8	63	27	0	31	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47980624--47980686	15	3.9	17	75	19	55	19	7	0	73	1.08
47980625--47980671	23	2.1	21	88	7	67	19	6	0	74	1.03
48007122--48007193	35	2.1	35	94	0	126	22	20	13	43	1.87
48009243--48009279	19	1.9	19	89	10	58	29	0	0	70	0.88
48009245--48009296	14	3.9	13	78	16	54	26	3	0	69	1.06
48009248--48009281	15	2.4	14	90	9	52	26	0	0	73	0.83
48009244--48009297	26	2.0	27	86	10	76	25	3	0	70	1.04
48020193--48020233	20	2.1	20	86	4	57	41	4	4	48	1.46
48022984--48023022	18	2.1	19	85	4	53	53	5	17	23	1.63
48027902--48028096	27	7.1	27	88	2	255	42	22	16	18	1.90
48027902--48028096	55	3.6	54	84	5	266	42	22	16	18	1.90
48027912--48028096	82	2.3	82	91	3	293	42	22	16	18	1.89
48030973--48031010	20	1.9	19	89	5	58	26	2	0	71	1.00
48030969--48031023	19	2.8	18	76	15	56	21	1	1	74	1.01
48033652--48033677	8	3.2	8	100	0	52	50	0	26	23	1.50
48037929--48037960	12	2.6	13	85	14	50	56	6	0	37	1.25
48038912--48038943	12	2.6	13	85	14	50	37	0	6	56	1.25
48040431--48040459	2	15.0	2	92	7	51	48	0	0	51	1.00
48061539--48062046	44	11.6	45	72	13	280	30	21	22	25	1.98
48061534--48061969	174	2.5	175	93	0	739	30	19	22	26	1.98
48061534--48062042	87	5.8	87	72	9	335	30	21	22	25	1.98
48070626--48070654	9	3.2	9	100	0	58	31	13	20	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48079281--48079544	135	1.9	138	82	2	327	32	25	21	20	1.97
48082237--48082275	14	2.7	15	88	7	55	58	10	12	17	1.61
48086054--48086103	26	1.9	26	87	0	73	42	22	16	20	1.89
48090865--48090895	13	2.4	13	100	0	62	19	38	16	25	1.92
48103790--48104049	137	1.9	138	83	2	344	30	24	22	22	1.99
48110262--48110310	20	2.5	20	81	15	66	12	24	6	57	1.58
48110520--48110753	50	4.6	50	79	4	211	23	27	21	27	1.99
48113037--48113100	26	2.5	26	86	0	92	29	20	25	25	1.99
48118110--48118156	24	2.0	24	86	0	67	17	6	23	53	1.66
48118303--48118633	32	10.4	32	83	6	404	19	20	20	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216