genome.fa.s15.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  118  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600341--37600387	24	2.0	24	84	16	62	31	0	17	51	1.46
37609978--37610017	13	2.9	14	92	7	73	57	7	0	35	1.27
37610036--37610161	54	2.3	54	91	0	207	44	14	9	31	1.77
37610100--37610138	19	2.1	19	95	0	69	48	12	10	28	1.74
37610222--37610267	9	4.8	10	84	10	60	23	2	21	52	1.58
37610222--37610267	19	2.4	19	85	7	58	23	2	21	52	1.58
37612516--37612750	51	4.7	50	78	10	221	27	17	26	28	1.98
37615635--37615697	9	6.9	9	82	10	74	23	9	28	38	1.86
37615625--37615663	20	2.0	20	94	0	69	23	7	25	43	1.80
37615652--37615696	17	2.6	17	85	3	63	22	11	28	37	1.88
37615760--37615818	28	2.1	28	84	3	75	44	6	15	33	1.73
37620650--37620834	50	3.7	49	87	7	232	29	16	25	28	1.97
37620600--37620834	51	4.7	49	80	8	233	27	17	26	28	1.97
37628216--37628246	15	2.1	15	100	0	62	35	19	0	45	1.51
37630490--37630516	11	2.5	11	100	0	54	22	7	18	51	1.70
37631913--37632107	93	2.1	92	88	4	286	44	4	4	47	1.41
37632140--37632173	17	2.0	17	94	0	59	44	5	0	50	1.26
37632140--37632178	17	2.4	16	87	8	53	43	5	0	51	1.24
37632144--37632183	17	2.3	18	83	12	57	47	5	0	47	1.24
37632263--37632397	15	8.9	15	67	24	70	42	2	3	51	1.32
37632139--37632357	120	1.8	119	89	6	345	40	3	5	50	1.44
37632365--37632406	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37632356--37632653	154	1.9	156	95	2	546	47	5	3	44	1.41
37632506--37632540	18	2.0	17	88	5	52	45	0	0	54	0.99
37632786--37632826	16	2.6	16	92	0	64	39	34	0	26	1.57
37636948--37636972	9	2.8	9	100	0	50	48	44	8	0	1.32
37659273--37659408	74	1.9	72	90	3	218	52	9	16	21	1.71
37659342--37659468	60	2.1	60	89	4	191	51	8	17	22	1.72
37663721--37663903	43	4.3	43	78	7	151	32	24	16	26	1.96
37669636--37669732	25	3.9	25	80	10	110	34	19	23	22	1.97
37669620--37669748	49	2.6	49	86	1	168	32	19	23	24	1.97
37686539--37686716	27	6.6	27	83	3	205	26	15	28	29	1.96
37686540--37686695	82	1.9	81	88	3	233	26	15	28	29	1.96
37686536--37686716	82	2.2	81	83	2	229	27	15	27	29	1.96
37694669--37694847	27	6.6	27	81	5	182	27	15	27	28	1.96
37694669--37694847	55	3.3	54	82	5	200	27	15	27	28	1.96
37694752--37694858	27	4.0	27	86	0	115	27	15	26	30	1.96
37720262--37720359	39	2.5	39	90	3	153	61	4	8	26	1.42
37725524--37725560	14	2.6	14	86	0	56	13	13	21	51	1.75
37732012--37732113	37	2.7	37	83	7	127	32	16	16	34	1.92
37735908--37736087	40	4.6	38	78	10	152	25	28	20	26	1.99
37735936--37736090	78	2.0	79	85	7	210	26	27	20	25	1.99
37735936--37736090	38	4.0	39	84	9	192	26	27	20	25	1.99
37737215--37737381	56	3.0	56	97	1	311	23	21	8	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37743168--37743349	78	2.3	81	83	6	230	24	27	23	24	2.00
37743147--37743349	40	5.1	40	81	9	229	24	27	22	25	2.00
37744477--37744652	56	3.1	56	99	0	343	22	22	9	45	1.80
37745655--37745705	20	2.5	20	80	3	57	45	15	27	11	1.81
37745655--37745734	21	3.9	21	76	1	81	43	16	27	12	1.83
37750619--37750683	32	2.0	32	100	0	130	27	33	13	24	1.93
37753512--37753735	79	2.8	78	83	6	263	25	27	22	25	2.00
37753512--37753735	40	5.7	40	86	6	271	25	27	22	25	2.00
37756228--37756270	21	2.0	21	95	0	77	41	18	25	13	1.88
37758428--37758453	13	2.0	13	100	0	52	53	0	30	15	1.42
37764007--37764053	10	4.7	10	89	10	78	21	0	0	78	0.75
37765318--37765479	71	2.3	71	84	0	225	41	13	13	31	1.83
37765319--37765479	24	6.8	24	67	8	69	40	13	13	31	1.84
37779611--37780081	44	10.7	44	91	0	681	27	22	28	21	1.99
37780954--37780995	17	2.5	16	85	14	50	14	4	4	76	1.12
37782215--37782275	18	3.2	18	75	17	52	34	3	0	62	1.12
37783372--37783603	54	4.3	54	82	2	277	37	14	20	27	1.91
37783582--37783804	39	5.7	39	79	2	232	40	19	21	17	1.91
37783777--37783959	54	3.4	54	85	1	224	38	18	20	22	1.93
37783452--37784151	357	2.0	357	82	4	865	40	16	21	21	1.91
37783939--37784346	39	10.5	39	81	2	300	41	13	22	22	1.89
37783933--37784268	117	2.9	117	81	2	352	41	14	23	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37798916--37799107	41	4.7	41	95	0	330	28	22	27	21	1.99
37801372--37801418	25	1.9	25	86	4	69	36	2	6	55	1.37
37803375--37803412	19	1.9	20	89	10	60	44	0	18	36	1.50
37805326--37805374	18	2.7	18	77	0	62	48	30	8	12	1.69
37808530--37808554	13	1.9	13	100	0	50	32	8	12	48	1.69
37808588--37808627	19	2.0	20	85	4	55	25	20	7	47	1.75
37810521--37810561	20	2.0	20	90	9	66	17	14	2	65	1.37
37811629--37811740	42	2.7	42	87	0	143	34	11	25	28	1.91
37812841--37813209	44	8.2	45	74	9	297	31	16	23	28	1.96
37812841--37814123	89	14.1	89	78	10	1114	31	17	23	27	1.96
37812841--37814123	181	7.1	178	79	8	1275	31	17	23	27	1.96
37813333--37814085	45	16.8	44	75	7	649	32	17	22	27	1.97
37814211--37814402	44	4.4	44	70	7	147	29	20	22	26	1.99
37814102--37814401	132	2.3	132	92	0	492	30	19	23	27	1.98
37814414--37814648	44	5.4	43	76	11	187	27	20	27	25	1.99
37814414--37814519	45	2.4	44	84	10	128	26	17	32	23	1.97
37817380--37817435	22	2.5	22	80	8	60	41	3	8	46	1.52
37817395--37817448	12	4.5	12	75	9	56	38	3	9	48	1.53
37819483--37819599	9	13.6	8	68	21	51	59	1	2	35	1.21
37819503--37819583	28	2.9	28	80	8	94	58	1	2	38	1.20
37819535--37819616	34	2.3	35	82	14	98	58	2	4	34	1.32
37819840--37819883	20	2.3	18	92	7	70	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37819848--37819990	9	15.8	9	68	18	66	32	1	2	64	1.14
37819907--37819958	26	2.0	26	85	7	70	38	0	0	61	0.96
37833778--37833885	29	3.8	28	69	13	78	45	2	1	50	1.27
37833786--37833865	30	2.8	31	81	10	91	45	2	0	52	1.14
37836402--37836449	25	2.0	24	83	4	60	41	8	8	41	1.65
37836560--37836647	26	3.1	26	63	27	61	46	3	1	48	1.26
37836560--37836740	62	2.9	61	84	8	215	46	3	3	45	1.37
37840203--37840266	27	2.4	26	84	5	74	18	26	29	25	1.98
37841052--37841097	13	3.5	13	85	5	65	30	0	10	58	1.32
37841119--37841168	14	3.8	13	80	17	50	26	0	20	54	1.45
37848724--37848763	20	2.1	19	85	4	53	32	7	12	47	1.69
37859405--37859435	12	2.6	12	94	0	53	70	0	9	19	1.14
37859455--37859488	2	17.0	2	87	0	50	44	0	5	50	1.26
37859455--37859495	12	3.4	12	86	0	55	43	2	7	46	1.44
37859514--37859599	32	2.6	32	76	20	88	48	3	10	37	1.55
37859870--37859947	3	26.3	3	75	12	54	57	1	7	33	1.35
37859871--37859926	18	3.3	17	78	16	62	58	1	5	33	1.31
37861025--37861062	15	2.3	17	86	13	53	7	15	57	18	1.62
37863422--37863579	87	1.8	85	81	8	194	25	18	16	39	1.91
37867851--37867889	19	2.2	18	86	9	53	12	17	48	20	1.80
37868278--37868329	25	2.0	28	88	11	83	51	3	11	32	1.56
37870229--37870455	41	5.5	41	97	0	418	26	22	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37872375--37872399	13	1.9	13	100	0	50	40	8	12	40	1.72
37873768--37873818	5	10.2	5	100	0	102	39	0	0	60	0.97
37881443--37881510	24	2.9	23	82	6	84	16	33	1	48	1.55
37887798--37887849	26	2.0	26	84	3	68	28	17	23	30	1.97
37889940--37889981	17	2.5	17	84	0	57	19	33	0	47	1.49
37889959--37890038	24	3.4	23	86	8	108	17	32	0	50	1.47
37890771--37890816	17	2.6	17	89	6	65	71	2	0	26	0.97
37890772--37890817	18	2.6	18	82	6	58	73	2	0	23	0.94
37893178--37893230	23	2.4	22	76	20	56	9	18	1	69	1.25
37896412--37896453	20	2.2	19	87	8	59	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216