genome.fa.s15.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  209  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64751939--64752091	70	2.2	70	81	2	171	42	9	19	28	1.83
64755229--64755276	18	2.5	20	86	6	64	45	25	8	20	1.79
64755552--64755590	20	2.0	20	89	0	60	48	0	2	48	1.15
64768204--64768233	8	3.6	8	91	8	51	73	13	0	13	1.10
64769107--64769141	7	5.0	7	89	10	54	71	0	14	14	1.15
64770374--64770628	86	2.9	88	85	3	329	31	23	20	23	1.98
64770383--64770682	86	3.5	86	82	5	327	31	23	21	23	1.98
64770726--64770915	41	4.6	40	73	14	138	31	19	20	29	1.97
64770642--64770919	124	2.2	124	97	0	520	31	19	21	28	1.97
64770623--64771052	44	10.1	44	71	13	176	31	20	22	25	1.98
64774022--64774067	18	2.3	20	85	10	60	50	15	2	32	1.56
64777094--64777202	41	2.6	41	92	1	173	24	22	28	23	2.00
64780865--64780904	9	4.4	9	83	0	53	47	20	7	25	1.75
64786476--64786521	21	2.1	22	88	4	67	8	10	10	69	1.37
64789398--64789558	46	3.8	45	81	12	189	26	21	16	35	1.94
64789484--64789622	37	3.8	37	94	0	233	25	21	13	38	1.90
64791526--64791563	20	1.9	20	88	0	58	34	18	18	28	1.95
64809893--64809948	9	6.8	8	78	13	60	64	1	1	32	1.14
64809893--64809937	17	2.7	17	86	3	65	66	2	0	31	1.04
64812202--64812272	28	2.4	29	78	19	85	46	0	1	52	1.09
64812237--64812277	8	5.0	8	88	5	64	41	0	0	58	0.98
64817822--64817899	31	2.6	29	80	9	93	60	7	7	24	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64823469--64823497	15	1.9	15	100	0	58	62	6	6	24	1.45
64828513--64828727	110	2.0	106	84	8	283	27	11	14	46	1.79
64833139--64833188	23	2.2	23	82	7	57	50	0	4	46	1.20
64840363--64840436	3	24.3	3	70	8	51	29	6	4	59	1.42
64855628--64855693	26	2.5	26	87	4	89	37	12	1	48	1.50
64855901--64855970	4	17.5	4	72	21	58	71	0	28	0	0.86
64855895--64855977	10	8.3	10	74	15	64	69	0	30	0	0.88
64855895--64856076	14	12.3	15	70	16	89	67	0	29	2	1.08
64855957--64856040	24	3.4	24	69	11	71	66	1	27	4	1.19
64856832--64856971	27	5.6	23	77	16	129	40	7	2	49	1.47
64856832--64856971	50	2.8	49	88	5	210	40	7	2	49	1.47
64856832--64856971	26	5.6	25	76	16	146	40	7	2	49	1.47
64861704--64861776	23	3.2	23	92	0	128	30	24	21	23	1.99
64862010--64862048	18	2.2	17	86	13	53	46	20	0	33	1.51
64863956--64863993	18	2.1	18	90	0	58	15	44	5	34	1.69
64863959--64864000	18	2.3	18	83	0	57	21	47	2	28	1.63
64865220--64865285	28	2.4	28	87	5	89	48	1	12	37	1.50
64870289--64870325	15	2.4	16	90	4	58	54	0	5	40	1.24
64870290--64870337	24	2.0	24	83	0	60	54	2	4	39	1.32
64871591--64871637	23	2.1	21	81	14	51	46	2	0	51	1.13
64873346--64873426	31	2.6	30	81	9	92	41	6	11	40	1.65
64877101--64877139	20	1.9	19	90	10	60	69	0	2	28	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64883489--64883539	20	2.6	21	84	12	72	62	0	0	37	0.95
64883504--64883550	18	2.7	18	76	3	51	63	0	0	36	0.94
64886050--64886088	7	5.3	7	84	9	51	76	0	0	23	0.78
64886050--64886091	14	2.8	15	89	7	59	76	0	0	23	0.79
64886051--64886091	15	2.6	16	81	14	50	78	0	0	21	0.76
64886930--64886974	16	2.8	16	83	12	65	33	0	0	66	0.92
64886924--64886991	26	2.6	27	77	13	70	32	1	0	66	1.01
64889837--64889871	6	5.8	6	100	0	70	51	0	34	14	1.42
64897994--64898057	28	2.3	28	83	0	74	23	6	17	53	1.66
64903684--64903743	31	2.0	31	83	3	77	38	8	11	41	1.72
64906026--64906075	25	2.0	24	88	3	73	42	0	0	58	0.98
64911486--64911548	27	2.4	24	76	21	63	49	3	6	41	1.44
64911530--64911574	17	2.4	19	82	14	58	57	0	0	42	0.98
64918363--64918427	31	2.1	31	88	0	94	35	6	18	40	1.76
64923220--64923321	38	2.5	40	81	6	109	53	3	0	41	1.26
64934218--64934325	51	2.1	51	84	6	139	36	6	19	37	1.78
64935463--64935501	16	2.4	16	87	8	53	23	12	0	64	1.28
64937590--64938637	216	4.9	217	89	4	1597	34	17	14	33	1.91
64938480--64938522	14	3.1	14	72	0	50	41	11	2	44	1.53
64939173--64939248	37	2.1	37	92	5	127	31	10	10	47	1.72
64942062--64942130	28	2.4	28	83	11	88	43	10	15	30	1.80
64943693--64943886	95	2.1	89	85	7	255	42	12	15	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64947808--64947844	18	2.1	17	90	5	56	56	0	0	43	0.99
64947903--64947936	12	2.6	13	86	13	52	38	0	0	61	0.96
64947936--64947977	13	2.9	14	80	13	50	57	0	2	40	1.12
64951700--64951749	22	2.2	23	82	3	57	20	2	8	70	1.23
64953703--64953771	16	4.2	16	90	3	111	24	1	36	37	1.65
64953703--64953771	33	2.1	32	91	2	111	24	1	36	37	1.65
64953990--64955328	120	11.2	120	98	0	2506	47	5	3	44	1.40
64954247--64954280	17	2.0	17	88	0	50	50	0	2	47	1.16
64954366--64954400	18	2.0	18	94	5	63	57	0	0	42	0.99
64954724--64954758	18	2.0	18	94	5	63	57	0	0	42	0.99
64955204--64955237	17	2.0	17	88	0	50	50	0	2	47	1.16
64954022--64955275	38	31.5	40	63	20	233	47	5	3	44	1.40
64958878--64958910	15	2.2	15	89	10	50	42	45	6	6	1.53
64966681--64966706	13	2.0	13	100	0	52	61	0	7	30	1.24
64967658--64967713	28	2.0	29	82	3	69	53	1	1	42	1.21
64967734--64967785	11	4.8	11	77	11	54	71	7	17	3	1.25
64968474--64968506	15	2.2	15	94	0	57	33	0	9	57	1.30
64968643--64968713	24	2.9	24	80	16	74	40	0	25	33	1.56
64974223--64974272	20	2.5	20	83	3	66	48	0	2	50	1.12
64975048--64975090	18	2.4	18	92	0	68	37	0	9	53	1.33
64975048--64975090	6	7.2	6	86	0	59	37	0	9	53	1.33
64975243--64975302	24	2.4	25	84	15	72	41	0	28	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64975446--64975541	39	2.5	39	80	6	108	20	23	28	27	1.99
64978738--64978770	16	2.1	16	94	0	57	48	3	12	36	1.56
64978927--64978964	15	2.4	17	82	13	53	57	0	7	34	1.28
64979264--64979303	19	2.1	19	86	9	55	67	7	7	17	1.38
64979267--64979311	18	2.4	19	81	3	56	66	8	8	15	1.43
64983731--64983773	16	2.8	16	80	16	54	41	0	0	58	0.98
64983736--64983982	91	2.7	91	97	0	458	46	2	2	47	1.31
64983735--64984059	91	3.5	91	87	7	390	46	2	2	48	1.30
64983736--64983957	47	4.9	46	68	21	157	46	2	2	48	1.28
64984098--64984127	16	1.9	15	93	6	51	40	0	10	50	1.36
64984132--64984173	15	2.7	16	82	14	52	45	0	2	52	1.13
64984123--64984164	15	2.9	15	82	10	52	47	0	0	52	1.00
64984297--64984397	39	2.6	39	87	4	132	32	28	5	32	1.81
64984868--64984917	24	2.1	23	88	3	73	70	0	4	26	1.05
64984876--64984926	23	2.2	24	85	3	68	72	1	1	23	1.05
64985263--64985305	11	3.9	11	84	0	50	72	6	9	11	1.29
64985253--64985299	22	2.1	22	88	0	67	72	8	8	10	1.29
64996228--64996313	30	2.8	31	79	11	97	38	2	16	43	1.61
64999792--64999826	2	17.5	2	100	0	70	51	48	0	0	1.00
65001802--65001847	18	2.8	18	84	15	64	0	30	41	28	1.56
65003622--65003664	13	3.1	14	84	12	54	60	0	0	39	0.97
65006138--65006246	3	36.0	3	85	1	83	55	2	9	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65007989--65008042	16	3.5	15	79	18	58	31	1	0	66	1.02
65016605--65016641	3	12.3	3	100	0	74	67	0	0	32	0.91
65017400--65017470	28	2.6	27	86	4	99	32	5	0	61	1.19
65017405--65017526	9	13.4	9	74	19	85	29	4	0	65	1.13
65017400--65017471	17	4.0	17	74	15	65	31	5	0	62	1.18
65030496--65030535	21	1.9	21	85	10	55	47	5	0	47	1.24
65031019--65031052	16	2.1	16	89	10	52	50	0	47	2	1.16
65040430--65040873	221	2.0	220	95	0	789	29	14	18	37	1.91
65040991--65041034	6	7.3	6	100	0	88	50	0	15	34	1.45
65042031--65042078	21	2.4	19	86	6	60	64	4	0	31	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216