genome.fa.s15.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  168  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52985779--52986059	125	2.3	124	81	6	327	29	13	23	33	1.92
52989231--52989892	29	25.0	27	75	18	507	30	0	22	46	1.52
52989260--52989294	17	2.0	18	88	5	54	31	0	20	48	1.50
52989301--52989370	34	2.1	34	86	0	95	32	0	18	48	1.48
52989393--52989427	17	2.0	18	88	5	54	31	0	20	48	1.50
52989224--52989802	133	4.4	133	87	9	803	31	0	22	46	1.52
52989434--52989503	34	2.1	34	86	0	95	32	0	18	48	1.48
52989601--52989635	17	2.0	18	88	5	54	31	0	20	48	1.50
52989487--52989892	23	15.7	23	72	21	210	30	0	22	46	1.52
52989846--52989880	17	2.0	18	88	5	54	31	0	20	48	1.50
52992165--52992221	30	1.9	30	92	7	98	61	1	0	36	1.07
52992264--52992305	22	1.9	22	90	0	66	33	0	33	33	1.58
52992255--52992357	52	2.0	51	83	9	129	34	0	32	33	1.58
52992307--52992398	22	4.2	23	80	8	102	42	0	26	31	1.56
52992307--52992398	44	2.1	44	83	4	114	42	0	26	31	1.56
52993123--52993175	23	2.3	23	90	6	81	39	5	16	37	1.73
52993132--52993180	23	2.1	23	96	0	89	36	6	18	38	1.76
52994569--52994599	3	10.0	3	93	6	53	67	0	0	32	0.91
53002195--53002284	42	2.2	41	80	9	103	23	28	27	20	1.99
53012067--53012145	18	4.2	20	76	15	89	31	20	16	31	1.95
53012082--53012160	18	4.3	19	75	15	76	29	17	17	35	1.93
53012077--53012155	36	2.2	36	90	4	124	29	20	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53012355--53012437	22	3.8	21	74	13	78	26	21	18	33	1.96
53012429--53012515	14	6.1	14	75	2	84	29	22	21	25	1.99
53012431--53012513	43	1.9	43	87	0	121	31	19	22	26	1.98
53013399--53013439	13	3.1	14	79	10	50	53	17	12	17	1.72
53021481--53021510	14	2.1	14	93	0	51	50	10	3	36	1.53
53023821--53024298	44	10.9	44	72	9	255	26	24	19	29	1.99
53023737--53024295	88	6.4	88	74	8	415	26	24	19	28	1.99
53024521--53024991	43	10.9	43	66	12	221	25	24	20	29	1.99
53024474--53025003	130	4.1	130	91	0	830	26	24	20	29	1.99
53024335--53025003	260	2.6	260	84	5	854	26	23	20	29	1.99
53026193--53026242	7	6.9	7	79	6	55	22	6	0	72	1.07
53026192--53026234	21	2.0	21	90	4	68	20	6	0	72	1.08
53026194--53026243	15	3.3	15	81	16	59	20	6	0	74	1.03
53026193--53026242	21	2.3	22	86	6	66	22	6	0	72	1.07
53027137--53027188	26	2.0	26	81	7	61	13	9	11	65	1.47
53035654--53035687	11	3.0	11	87	8	50	35	0	0	64	0.94
53035824--53035855	13	2.5	13	94	0	55	40	0	12	46	1.42
53036144--53036170	7	3.9	7	100	0	54	74	0	0	25	0.83
53038036--53038087	21	2.5	21	75	6	52	15	5	25	53	1.63
53039164--53039217	23	2.4	21	79	11	54	57	3	9	29	1.47
53041565--53041636	29	2.4	30	84	11	87	52	1	1	44	1.18
53046107--53046162	27	2.2	26	84	12	71	66	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53046276--53046320	3	15.0	3	90	0	72	66	4	0	28	1.11
53048116--53048217	29	3.5	29	80	5	125	21	27	28	22	1.99
53048116--53048230	29	3.9	29	79	5	124	21	25	29	23	1.99
53052322--53052493	21	8.1	21	75	4	114	48	15	18	17	1.82
53052338--53052488	42	3.6	42	85	0	185	48	15	17	17	1.82
53052315--53052488	63	2.8	62	75	6	143	47	15	18	18	1.83
53057684--53057926	44	5.4	44	71	16	192	46	2	2	48	1.30
53057684--53058028	91	3.6	98	86	8	400	45	3	2	48	1.31
53057718--53057985	47	5.9	43	71	19	181	45	3	2	48	1.33
53057654--53057951	91	3.3	91	95	0	524	46	3	3	46	1.35
53058658--53058762	52	2.0	52	100	0	210	51	17	11	20	1.75
53059599--53059841	121	2.0	121	98	0	468	38	16	7	37	1.78
53061662--53061834	86	2.0	86	100	0	346	38	13	4	42	1.65
53062863--53062931	30	2.3	31	80	12	81	53	2	2	40	1.31
53069012--53069041	6	5.2	6	92	8	53	66	16	0	16	1.25
53070954--53070982	12	2.3	13	94	5	51	24	0	0	75	0.80
53075396--53075844	44	10.1	44	83	5	330	29	21	18	31	1.97
53075360--53075846	88	5.5	87	83	7	543	28	22	18	30	1.97
53075225--53075844	132	4.6	133	78	9	576	29	21	18	31	1.97
53088913--53088949	17	2.1	18	90	5	58	5	18	5	70	1.27
53090180--53090210	14	2.3	13	94	5	53	38	9	0	51	1.35
53092127--53092160	7	4.9	7	96	0	59	29	38	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53093390--53093414	13	1.9	13	100	0	50	72	4	0	24	1.02
53096183--53096254	20	3.7	19	82	14	85	36	0	6	56	1.26
53104836--53104875	20	2.0	20	90	0	62	27	10	12	50	1.72
53104821--53104887	34	1.9	35	87	3	100	32	8	11	46	1.72
53105045--53105095	26	2.2	24	78	21	56	60	5	0	33	1.21
53108259--53108302	21	2.1	21	100	0	88	27	18	13	40	1.88
53108423--53108455	17	2.0	17	94	5	59	45	0	0	54	0.99
53108558--53108778	108	2.0	108	91	1	354	38	7	28	25	1.82
53111803--53111889	40	2.2	40	83	6	106	34	5	19	40	1.76
53112064--53112146	39	2.2	39	86	6	116	19	20	21	38	1.93
53112064--53112236	45	4.2	39	75	18	134	20	19	21	39	1.93
53112091--53112245	45	3.4	45	88	0	238	20	17	20	41	1.90
53112220--53112256	12	2.8	13	92	8	58	24	16	13	45	1.83
53117618--53117700	39	2.2	39	82	6	98	20	21	21	36	1.96
53117649--53117749	45	2.2	45	89	0	148	19	17	21	40	1.91
53117636--53117743	45	2.6	39	76	16	108	19	19	22	38	1.93
53117729--53117777	6	7.8	6	93	6	80	18	16	18	46	1.84
53119042--53119252	105	2.0	105	97	0	395	31	25	8	35	1.85
53122942--53123027	28	2.8	31	74	16	81	25	25	25	23	2.00
53122947--53123046	33	3.2	32	73	13	91	29	23	24	24	1.99
53131171--53131303	70	1.9	67	88	7	196	41	12	13	32	1.82
53135199--53136613	123	11.6	122	75	6	934	23	21	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53136229--53136522	120	2.5	120	75	8	267	22	21	19	37	1.94
53139221--53139245	5	5.0	5	100	0	50	20	0	0	80	0.72
53146398--53146426	8	3.6	8	100	0	58	0	34	0	65	0.93
53151814--53151876	31	2.1	31	87	3	92	38	11	14	36	1.81
53152495--53152522	13	2.2	13	100	0	56	35	0	7	57	1.26
53154005--53154068	28	2.4	25	84	7	74	64	0	4	31	1.14
53154004--53154068	26	2.5	26	87	7	87	64	0	4	30	1.14
53154380--53154405	6	4.3	6	100	0	52	15	0	46	38	1.46
53154237--53154796	230	2.4	232	92	3	930	35	2	18	44	1.64
53156302--53156344	21	2.1	21	86	4	61	2	18	46	32	1.62
53156302--53156358	21	2.8	20	81	7	60	5	15	43	35	1.70
53159235--53159277	19	2.3	18	84	15	52	62	0	0	37	0.95
53160005--53160096	19	4.8	19	91	0	148	38	14	8	39	1.77
53159982--53160096	38	2.9	38	84	5	140	39	14	7	38	1.76
53160428--53160523	11	9.0	11	77	16	87	44	1	31	22	1.60
53160412--53160511	51	2.0	51	90	4	157	46	1	29	24	1.59
53161582--53161648	34	1.9	35	87	3	100	44	14	8	31	1.76
53165259--53165283	13	1.9	13	100	0	50	12	24	32	32	1.91
53165698--53166004	157	2.0	157	94	0	533	47	4	3	44	1.39
53165864--53165898	18	2.0	17	88	5	52	45	0	0	54	0.99
53175000--53175184	101	1.8	102	91	3	311	23	18	27	30	1.97
53174997--53175192	51	3.9	49	81	4	223	22	18	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53175002--53175192	102	1.9	100	90	3	276	23	18	28	29	1.98
53175188--53175286	46	2.2	43	81	12	110	24	17	24	34	1.96
53175410--53175441	16	2.0	16	93	0	55	59	0	15	25	1.36
53180469--53180526	18	3.4	18	69	26	63	15	13	13	56	1.67
53180464--53180534	32	2.2	32	100	0	142	15	18	16	49	1.80
53181108--53181135	6	4.7	6	100	0	56	46	0	35	17	1.49
53181131--53181273	51	2.8	51	82	4	189	21	16	29	32	1.95
53190276--53190339	25	2.6	26	80	9	64	39	18	21	20	1.93
53190295--53190364	25	2.8	25	78	4	70	35	21	24	18	1.95
53192833--53192858	13	2.0	13	100	0	52	30	7	15	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216