genome.fa.s15.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  68  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20368403--20368445	16	2.5	17	81	7	52	34	6	4	53	1.49
20368439--20368489	20	2.6	20	84	3	68	39	7	0	52	1.30
20368343--20368586	102	2.4	101	93	2	400	34	10	3	52	1.52
20368343--20368587	54	4.8	49	69	17	169	34	10	3	52	1.52
20368426--20368583	48	3.2	49	71	19	155	34	10	4	50	1.57
20373300--20373369	29	2.4	29	85	0	104	58	18	11	11	1.62
20373367--20373409	20	2.2	20	87	8	61	53	16	25	4	1.62
20373379--20373429	25	2.0	25	85	7	68	49	15	27	7	1.72
20385421--20385506	20	4.2	20	76	12	75	46	23	13	16	1.83
20395780--20395814	18	1.9	18	100	0	70	40	14	11	34	1.82
20399982--20400119	10	14.7	9	69	15	59	63	1	4	31	1.23
20400035--20400075	19	2.1	20	90	4	66	68	0	4	26	1.10
20400048--20400139	10	9.4	10	70	16	59	64	1	5	29	1.23
20400093--20400128	18	1.9	18	88	5	54	63	0	11	25	1.27
20400151--20400211	20	3.0	21	78	4	70	67	3	8	21	1.32
20400412--20400453	20	2.1	20	82	8	50	30	7	2	59	1.37
20400422--20400462	19	2.2	18	83	12	55	34	4	0	60	1.18
20400397--20400543	9	15.1	9	67	14	60	31	3	2	62	1.26
20401868--20402222	96	3.7	96	93	0	577	29	18	24	28	1.98
20408556--20408905	124	2.8	124	92	0	585	30	14	21	33	1.93
20410961--20410999	17	2.3	17	100	0	78	28	10	12	48	1.74
20428273--20428331	15	3.8	15	75	16	66	54	1	0	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20428308--20428358	24	2.1	24	85	7	68	54	0	0	45	0.99
20428378--20428453	16	4.6	16	71	9	55	39	0	1	59	1.06
20428348--20428459	24	4.7	23	70	13	75	43	0	0	54	1.12
20428568--20428656	44	2.0	46	82	8	112	39	23	2	34	1.67
20432434--20432591	71	2.2	71	88	0	226	29	20	20	28	1.98
20432628--20432682	22	2.5	22	69	0	56	23	16	21	38	1.93
20435307--20435331	13	1.9	13	100	0	50	32	4	24	40	1.73
20447232--20447289	28	2.2	25	80	19	80	43	22	12	22	1.86
20447238--20447294	28	2.0	28	100	0	114	43	24	10	21	1.83
20448508--20448538	15	2.1	15	100	0	62	25	12	6	54	1.62
20450046--20450117	26	2.8	25	91	4	108	40	13	23	22	1.90
20450053--20450171	26	4.4	28	77	12	70	34	16	26	22	1.95
20450124--20450176	28	1.9	28	88	3	81	32	18	30	18	1.96
20452721--20452754	3	11.3	3	100	0	68	67	0	0	32	0.91
20453370--20453416	19	2.6	18	83	6	60	72	8	14	4	1.24
20457910--20458051	43	3.3	43	86	3	153	30	24	15	29	1.96
20457933--20458065	43	3.1	42	80	6	151	28	23	15	32	1.95
20458374--20458423	21	2.4	21	96	0	91	2	46	16	36	1.58
20463786--20464173	9	42.0	9	66	18	131	35	0	18	46	1.52
20463775--20463855	26	3.1	26	81	10	110	39	0	16	44	1.47
20463775--20464027	53	4.5	55	70	22	138	37	0	17	44	1.52
20463827--20464202	58	6.3	58	73	16	238	35	0	18	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20463839--20463937	49	2.0	50	90	2	155	37	1	19	42	1.58
20463839--20464130	49	5.7	48	70	22	134	34	0	18	45	1.53
20463839--20463974	49	2.7	49	82	5	139	36	0	19	43	1.57
20464040--20464114	38	2.0	38	94	0	132	37	0	17	45	1.49
20464235--20464320	9	9.3	9	75	9	75	38	1	16	44	1.55
20464235--20464320	37	2.3	37	82	7	104	38	1	16	44	1.55
20464235--20464310	28	2.7	29	80	13	88	38	0	17	44	1.49
20464436--20464476	20	2.0	20	100	0	82	14	19	9	56	1.66
20464532--20464725	75	2.6	74	88	4	295	48	7	10	32	1.66
20464858--20465008	66	2.3	65	86	3	203	49	11	3	35	1.56
20467454--20467553	29	3.5	28	76	16	98	37	40	1	22	1.61
20467480--20467658	7	25.1	7	72	12	78	43	32	1	22	1.61
20467480--20467665	14	13.1	14	72	9	90	43	32	1	22	1.60
20467519--20467607	22	4.1	21	73	11	72	46	31	1	21	1.59
20467480--20467658	36	5.0	35	75	13	100	43	32	1	22	1.61
20467963--20468263	114	2.7	113	89	2	464	26	24	20	28	1.99
20468194--20468301	40	2.7	40	84	2	128	23	26	22	27	1.99
20468397--20468430	10	3.4	10	87	0	50	44	14	0	41	1.45
20474517--20474554	19	2.0	19	85	10	51	42	2	5	50	1.39
20475256--20475282	12	2.2	12	100	0	54	48	7	7	37	1.59
20479733--20479820	43	2.0	43	100	0	176	28	14	25	31	1.95
20482494--20482640	74	2.0	74	94	2	260	38	9	12	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20483955--20483983	13	2.1	14	93	6	51	82	0	6	10	0.83
20484033--20484064	11	2.9	11	100	0	64	56	15	9	18	1.66
20484033--20484073	11	3.7	11	93	0	55	58	12	7	21	1.58
20485460--20485490	15	2.1	15	93	0	53	19	45	9	25	1.81
20485476--20485988	217	2.4	217	90	0	792	26	23	19	30	1.98
20485526--20485988	44	10.6	45	69	12	182	26	23	19	30	1.98
20494380--20494440	3	20.3	3	75	0	50	62	6	1	29	1.30
20494380--20494440	18	3.4	18	79	0	59	62	6	1	29	1.30
20498024--20498087	32	2.0	32	96	0	119	12	29	9	48	1.72
20501494--20501564	36	2.1	34	89	10	110	52	2	5	39	1.40
20506280--20506375	39	2.4	41	84	8	117	31	14	21	32	1.94
20506729--20506763	17	2.0	18	88	5	54	34	8	11	45	1.71
20512054--20512088	17	2.0	18	88	5	54	34	8	11	45	1.71
20513149--20513183	17	2.0	18	94	5	63	34	5	11	48	1.63
20526038--20526072	17	2.0	18	88	5	54	34	8	11	45	1.71
20529514--20529554	14	2.8	15	82	10	50	24	2	4	68	1.22
20529610--20529742	35	3.8	35	79	0	131	25	21	12	41	1.87
20531832--20531860	6	4.8	6	100	0	58	34	0	48	17	1.47
20534232--20534260	9	3.2	9	100	0	58	44	0	10	44	1.38
20534376--20534442	29	2.3	30	80	10	86	35	2	4	56	1.35
20538865--20538916	5	10.4	5	100	0	104	59	0	0	40	0.97
20540187--20540252	34	1.9	34	90	0	105	15	13	27	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20540187--20540264	34	2.3	34	86	4	104	15	11	29	43	1.82
20549660--20549687	6	4.7	6	100	0	56	32	17	17	32	1.94
20554738--20554779	21	2.0	21	86	4	59	33	9	2	54	1.46
20561383--20561451	34	2.0	34	100	0	138	33	34	2	28	1.72
20564951--20565019	26	2.7	26	86	0	102	26	14	17	42	1.87
20574138--20574163	13	2.0	13	100	0	52	23	30	23	23	1.99
20579560--20579607	19	2.5	20	82	6	62	10	4	6	79	1.05
20579832--20579879	3	16.0	3	80	8	53	27	2	2	68	1.11
20585385--20585653	49	5.8	46	74	10	206	34	19	18	26	1.95
20585385--20585653	46	5.7	48	75	10	225	34	19	18	26	1.95
20585380--20585786	44	8.9	45	72	9	195	34	20	17	27	1.95
20585380--20585785	139	3.0	139	83	3	488	33	20	17	27	1.95
20602031--20602055	6	4.2	6	100	0	50	0	68	0	32	0.90
20608022--20608053	14	2.4	14	94	5	57	21	6	0	71	1.07
20611123--20611180	22	2.6	23	81	8	66	34	22	24	18	1.96
20611122--20611212	23	4.0	22	77	9	78	36	19	23	20	1.95
20613675--20613708	16	2.1	17	88	5	52	23	2	2	70	1.15
20616786--20616980	89	2.2	89	80	5	207	28	24	18	27	1.98
20624532--20624569	3	12.3	3	84	15	51	65	0	2	31	1.06
20624532--20624569	11	3.1	12	88	11	51	65	0	2	31	1.06
20624532--20624569	14	2.7	14	91	0	58	65	0	2	31	1.06
20628360--20628422	30	2.1	30	96	0	117	30	11	20	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20630312--20630351	21	1.9	21	85	10	55	47	2	15	35	1.58
20631405--20631532	43	3.0	43	79	4	132	20	17	28	34	1.95
20634144--20634221	36	2.2	36	95	0	138	35	8	16	38	1.80
20646050--20646077	14	2.0	14	100	0	56	7	28	0	64	1.20
20646141--20646169	6	5.0	6	95	4	51	13	0	17	68	1.20
20647753--20647787	17	2.1	17	100	0	70	34	0	0	65	0.93
20648524--20648595	37	1.9	38	94	2	128	18	13	6	61	1.54
20648700--20648757	26	2.3	25	80	11	64	36	20	6	36	1.80
20649634--20649663	3	9.7	3	92	7	51	0	33	0	66	0.92
20654236--20654470	50	4.6	50	78	6	188	28	20	26	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216