genome.fa.s15.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  32  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235091--9235149	27	2.2	28	78	9	68	30	28	27	13	1.94
9235660--9235718	19	3.2	19	80	4	84	38	11	0	49	1.40
9235796--9235889	18	5.1	19	80	5	111	38	11	0	50	1.39
9235796--9235889	37	2.5	37	94	0	170	38	11	0	50	1.39
9235645--9235921	136	2.0	134	86	5	387	44	7	4	44	1.52
9235893--9235986	19	5.1	18	79	5	98	48	0	12	38	1.41
9235893--9235986	37	2.5	37	96	0	179	48	0	12	38	1.41
9235893--9235978	18	4.7	18	82	4	109	50	0	12	37	1.41
9236243--9236280	20	1.9	20	89	10	60	39	5	7	47	1.55
9236543--9236601	27	2.2	27	84	0	73	13	28	27	30	1.94
9236642--9236705	28	2.4	28	94	5	114	48	0	10	40	1.38
9239172--9239245	24	3.4	24	64	24	72	48	21	10	18	1.78
9239161--9239245	41	2.1	41	100	0	170	49	23	10	16	1.77
9243298--9243350	21	2.5	21	93	0	88	24	9	35	30	1.87
9243317--9243361	21	2.1	21	87	0	63	35	8	31	24	1.86
9248936--9248965	7	4.3	7	100	0	60	30	0	26	43	1.55
9250499--9250539	20	2.1	19	86	4	55	70	2	2	24	1.11
9252582--9252612	11	2.7	12	90	10	55	0	16	0	83	0.64
9252684--9252716	5	6.8	5	89	3	50	45	0	0	54	0.99
9256650--9256701	14	3.6	14	74	5	50	44	0	5	50	1.26
9257033--9257057	13	1.9	13	100	0	50	40	0	12	48	1.40
9260792--9260851	26	2.3	26	91	0	93	16	16	10	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9264097--9264201	31	3.4	31	71	10	90	38	1	5	54	1.35
9266470--9266550	6	13.5	6	92	0	54	60	0	7	32	1.24
9266487--9266547	3	20.3	3	100	0	122	67	0	0	32	0.91
9268265--9268647	130	3.0	129	89	2	572	25	24	19	30	1.98
9268644--9269120	88	5.4	88	86	1	686	22	24	26	27	2.00
9268644--9269120	264	1.8	264	90	0	767	22	24	26	27	2.00
9275746--9275782	3	12.3	3	88	0	56	64	2	2	29	1.21
9291087--9291511	132	3.2	132	91	0	681	32	21	20	24	1.97
9291749--9291844	40	2.3	40	82	7	111	31	22	25	20	1.98
9291685--9292059	44	8.7	44	70	17	171	30	22	24	23	1.99
9291598--9292060	256	1.8	257	84	3	637	29	21	24	25	1.99
9291814--9292148	44	7.7	43	69	13	113	30	20	23	25	1.98
9312863--9312919	20	2.9	19	85	10	80	29	0	3	66	1.08
9321977--9322020	18	2.4	19	84	3	63	34	11	18	36	1.86
9322287--9322347	30	2.0	32	87	6	90	21	37	0	40	1.53
9323099--9323124	5	5.2	5	100	0	52	19	19	19	42	1.90
9323212--9324375	146	8.0	146	82	3	1328	37	14	20	27	1.91
9329632--9329789	76	2.1	74	80	11	180	32	20	10	36	1.86
9329948--9330067	10	12.7	10	67	18	53	66	0	3	29	1.13
9329949--9329979	16	1.9	16	100	0	62	77	0	0	22	0.77
9329962--9330037	29	2.6	29	75	8	82	65	1	1	31	1.09
9330357--9330455	9	10.3	10	71	12	66	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9330356--9330454	20	5.3	19	69	21	66	35	2	0	62	1.07
9330348--9330456	38	2.9	38	80	6	107	36	1	0	61	1.07
9330356--9330455	28	3.5	28	77	14	80	35	2	0	63	1.06
9330386--9330467	19	4.3	19	76	11	87	35	0	1	63	1.02
9330386--9330468	10	8.7	10	78	13	61	34	0	1	63	1.02
9330839--9330898	26	2.4	24	83	8	75	41	3	3	51	1.35
9332435--9332476	22	2.0	22	90	9	70	33	0	2	64	1.07
9344617--9344684	22	3.1	22	75	6	68	26	2	29	41	1.70
9353751--9353784	2	17.0	2	100	0	68	0	0	50	50	1.00
9355397--9355530	37	3.4	40	71	8	103	35	24	14	24	1.94
9356691--9356736	22	2.1	22	100	0	92	52	26	0	21	1.47
9360077--9360134	9	6.4	9	75	15	57	41	17	8	32	1.80
9360077--9360134	27	2.1	27	83	0	71	41	17	8	32	1.80
9360077--9360134	18	3.2	18	85	9	66	41	17	8	32	1.80
9360256--9360299	18	2.4	18	88	7	63	13	2	43	40	1.57
9363198--9363309	43	2.6	43	79	13	131	24	21	26	27	1.99
9370683--9370734	25	2.0	26	85	3	70	46	1	1	50	1.23
9370707--9370746	20	2.0	20	90	4	64	35	0	5	60	1.19
9377747--9377785	20	2.0	20	90	5	62	35	0	5	58	1.20
9378700--9378754	13	4.4	13	72	25	55	21	14	5	58	1.57
9378700--9378777	37	2.1	37	85	7	104	21	15	8	53	1.69
9380844--9380895	21	2.5	22	75	12	56	53	0	3	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9383603--9383901	127	2.3	126	80	6	296	34	15	17	33	1.90
9385285--9385311	13	2.1	13	100	0	54	85	0	0	14	0.61
9387976--9388179	104	2.0	104	88	0	300	28	28	11	30	1.92
9388320--9388517	100	2.0	100	97	0	378	34	8	13	43	1.74
9394134--9394204	35	2.0	35	100	0	142	25	11	30	32	1.91
9395996--9396023	8	3.5	8	100	0	56	89	0	10	0	0.49
9400596--9400634	21	1.9	20	89	5	60	23	5	25	46	1.73
9409880--9410129	50	4.9	50	83	5	270	27	20	28	24	1.99
9409946--9410168	50	4.5	50	84	1	171	28	21	26	23	1.99
9411961--9412072	52	2.2	51	83	6	136	43	12	15	28	1.83
9422990--9423026	6	6.2	6	93	0	56	0	37	0	62	0.96
9429013--9429060	24	2.0	24	95	0	87	16	22	0	60	1.36
9433334--9433611	33	7.6	33	67	20	133	21	17	26	33	1.96
9433362--9433573	42	5.5	41	67	19	159	21	15	27	34	1.94
9433334--9433610	75	3.7	75	90	0	437	21	17	27	33	1.96
9441190--9441232	3	14.3	3	95	0	77	32	2	0	65	1.06
9446266--9446340	34	2.2	34	87	0	105	26	33	24	16	1.95
9446943--9446977	15	2.4	15	90	4	54	48	0	8	42	1.33
9447522--9448051	270	2.0	270	92	0	880	28	20	19	32	1.97
9451173--9451268	12	7.2	13	78	14	54	21	2	1	75	0.98
9451194--9451264	4	18.5	4	81	18	89	25	0	0	74	0.82
9451175--9451265	24	3.7	25	84	10	109	23	1	1	74	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9451194--9451271	7	10.9	7	85	13	97	25	1	0	73	0.91
9453032--9453066	15	2.4	15	90	4	54	48	0	8	42	1.33
9453091--9453138	10	4.9	10	76	2	53	25	6	2	66	1.26
9457562--9457615	24	2.2	25	87	9	76	40	0	7	51	1.30
9470130--9470183	26	2.1	26	100	0	108	50	18	3	27	1.64
9471737--9471808	25	2.9	25	80	0	72	33	20	23	22	1.97
9472390--9472461	25	2.9	25	80	0	72	33	20	23	22	1.97
9471224--9473184	653	3.0	653	99	0	3877	37	17	14	30	1.90
9473043--9473114	25	2.9	25	80	0	72	33	20	23	22	1.97
9477913--9477953	20	2.0	20	95	0	73	34	14	7	43	1.73
9493260--9493324	22	3.0	22	71	13	71	21	15	12	50	1.76
9494574--9494608	9	3.9	9	96	0	61	22	11	0	65	1.24
9494909--9495567	113	5.8	112	76	6	527	30	18	23	26	1.98
9495672--9495707	18	2.0	18	89	10	56	25	0	5	69	1.10
9496008--9496165	81	1.9	82	83	3	203	27	1	27	44	1.62
9496580--9496639	7	8.6	7	83	7	68	5	0	46	48	1.24
9496589--9496646	14	4.2	14	85	10	66	8	0	43	48	1.34
9496580--9496646	21	3.2	22	83	8	77	7	0	44	47	1.31
9497210--9497300	42	2.2	42	84	7	114	25	21	23	29	1.99
9497223--9497386	85	1.9	84	84	10	219	25	24	20	30	1.98
9497224--9497388	42	3.9	42	86	8	205	24	24	20	30	1.98
9497949--9497977	8	3.8	8	95	4	51	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9498072--9498161	17	5.3	17	71	12	69	34	2	2	61	1.21
9513831--9513860	2	15.0	2	100	0	60	0	0	50	50	1.00
9523372--9523424	28	1.9	27	92	3	88	69	0	0	30	0.88
9526913--9526939	5	5.4	5	100	0	54	81	0	0	18	0.69
9532496--9532539	13	3.3	13	90	3	61	50	0	4	45	1.22
9538590--9538620	14	2.2	14	100	0	62	19	6	29	45	1.75
9538882--9538911	12	2.5	12	94	0	51	13	23	20	43	1.86
9542732--9543599	121	7.2	121	97	0	1594	43	2	6	48	1.41
9542732--9543599	364	2.4	364	97	0	1614	43	2	6	48	1.41
9543748--9543837	43	2.0	45	82	4	112	37	28	6	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216