genome.fa.s15.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  52  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15140174--15140238	27	2.4	27	87	2	87	33	12	10	43	1.77
15143862--15143904	6	7.7	6	80	15	56	16	2	0	81	0.79
15143863--15143904	5	7.8	5	87	12	57	16	2	0	80	0.81
15143863--15143904	11	3.8	11	96	0	75	16	2	0	80	0.81
15145044--15145095	3	17.7	3	80	4	61	30	0	3	65	1.10
15151542--15151581	21	1.9	21	90	10	64	42	5	30	22	1.75
15151563--15151710	51	2.9	51	83	2	181	32	20	23	23	1.98
15151460--15151892	123	3.4	123	77	10	438	32	16	24	26	1.96
15151897--15152279	89	4.3	88	82	1	325	32	16	21	29	1.96
15151941--15152276	44	7.6	44	75	2	188	33	16	20	30	1.95
15151945--15152231	133	2.2	132	79	1	288	32	17	20	29	1.95
15151899--15152386	89	5.4	89	79	5	286	33	16	20	29	1.95
15151985--15152233	132	1.9	133	82	0	311	32	17	21	28	1.96
15152222--15152468	96	2.6	96	88	2	349	35	17	19	28	1.94
15154021--15154072	3	17.7	3	80	4	61	30	0	3	65	1.10
15156225--15156255	9	3.4	9	90	0	53	25	12	22	38	1.90
15156309--15156345	9	4.1	9	92	0	65	45	13	10	29	1.77
15162526--15162565	20	2.0	20	95	0	71	32	25	12	30	1.92
15174914--15174981	23	2.9	22	79	10	64	54	0	0	45	0.99
15176078--15176161	42	2.0	42	95	0	150	39	20	0	40	1.52
15176434--15176464	13	2.4	13	88	0	53	74	0	0	25	0.82
15176871--15176920	18	2.8	18	78	0	55	26	6	4	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15189542--15190049	44	11.7	44	71	12	268	28	17	23	30	1.97
15189803--15190079	128	2.2	128	95	0	491	26	17	22	33	1.96
15190334--15190363	10	3.1	10	95	4	53	73	0	0	26	0.84
15190771--15190820	18	2.8	18	78	0	55	26	6	4	64	1.35
15194450--15194487	9	4.3	9	80	6	51	55	0	2	42	1.14
15194454--15194553	11	9.4	11	71	22	54	62	1	3	34	1.17
15194451--15194525	18	4.2	17	73	11	60	62	1	2	33	1.17
15194529--15194593	21	3.2	20	82	8	69	56	3	4	35	1.35
15194546--15194614	30	2.3	30	80	9	79	59	4	4	31	1.37
15194999--15195051	10	5.3	10	77	8	54	24	0	1	73	0.93
15195009--15195051	20	2.2	19	91	4	68	25	0	0	74	0.82
15195016--15195058	19	2.2	20	83	4	52	32	0	2	65	1.06
15196344--15196379	16	2.2	16	100	0	72	25	0	36	38	1.56
15196593--15196953	120	3.0	120	94	1	598	50	4	1	43	1.30
15196752--15196935	37	4.7	37	70	17	140	51	3	1	44	1.27
15196735--15196888	18	8.9	18	66	18	76	54	2	0	42	1.19
15202304--15202336	13	2.5	13	90	9	50	39	3	0	57	1.14
15202546--15202983	218	2.0	218	96	0	806	34	15	19	30	1.93
15204034--15204091	3	19.3	3	82	7	73	65	3	1	29	1.19
15204055--15204102	15	3.1	15	85	8	53	68	4	0	27	1.07
15204761--15204797	6	6.2	6	93	0	65	81	0	0	18	0.70
15205656--15206912	179	7.1	179	85	2	1140	26	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15205659--15206898	89	13.9	89	84	2	997	26	22	21	29	1.99
15206618--15206756	44	3.1	44	70	9	120	29	23	17	30	1.97
15206322--15206934	266	2.3	266	86	2	874	27	23	19	29	1.98
15206503--15206907	45	9.1	45	64	11	161	27	23	18	30	1.98
15208009--15208092	42	2.0	42	85	0	114	27	29	11	30	1.92
15213625--15213665	22	1.9	21	85	5	55	56	0	7	36	1.27
15213905--15213976	3	23.3	3	82	2	81	65	5	1	27	1.23
15215205--15215255	27	1.9	27	88	11	79	60	0	7	31	1.25
15215490--15215523	14	2.4	14	90	9	52	67	0	0	32	0.91
15215489--15215528	18	2.2	19	86	4	55	70	0	0	30	0.88
15220664--15220833	57	3.0	57	81	5	184	27	27	15	30	1.96
15220661--15220824	29	5.8	29	69	10	97	26	26	16	31	1.97
15222591--15222723	57	2.3	57	80	0	149	26	24	18	30	1.98
15232148--15232394	126	2.0	127	93	0	424	32	19	14	34	1.91
15235983--15236045	25	2.5	25	82	5	65	30	23	19	26	1.98
15241558--15241646	43	2.1	43	91	0	142	15	17	22	43	1.87
15249545--15249570	13	2.0	13	100	0	52	15	23	30	30	1.95
15252230--15252259	15	1.9	16	93	6	53	53	20	0	26	1.46
15268594--15268836	124	2.0	124	91	1	398	27	11	21	39	1.88
15274889--15274916	13	2.2	13	100	0	56	64	0	14	21	1.29
15276047--15276158	48	2.3	48	93	3	190	17	26	21	33	1.96
15276047--15276159	24	4.7	24	76	9	115	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276172--15276219	25	2.0	25	87	4	71	25	22	16	35	1.95
15278412--15278455	23	1.9	22	82	17	54	36	25	0	38	1.56
15278500--15278593	45	2.1	45	93	0	161	30	24	19	25	1.98
15278599--15278785	51	3.7	50	72	9	173	31	27	16	25	1.96
15290201--15290265	16	4.1	16	89	0	103	38	4	33	23	1.75
15290244--15290334	45	2.0	44	89	2	137	31	6	28	32	1.83
15290514--15290701	61	3.1	61	68	19	185	47	6	2	43	1.40
15290477--15290774	120	2.5	120	94	0	524	49	5	2	43	1.35
15290575--15290786	54	3.6	58	68	19	163	50	4	2	42	1.36
15290619--15290653	18	2.0	17	88	5	52	54	0	0	45	0.99
15290737--15290773	16	2.2	17	86	13	51	54	0	2	43	1.14
15290814--15290874	28	2.2	28	85	5	81	50	3	0	45	1.17
15290793--15291087	91	3.2	91	94	0	500	46	4	3	45	1.39
15296160--15296186	12	2.2	12	100	0	54	44	0	40	14	1.46
15299352--15299385	17	2.1	17	88	5	52	52	0	0	47	1.00
15305150--15305188	20	2.0	20	90	5	62	58	0	2	38	1.12
15316513--15316563	12	4.2	12	80	5	59	17	23	5	52	1.66
15316812--15317054	50	4.7	50	86	3	288	23	30	20	25	1.99
15325404--15325500	48	2.0	48	100	0	194	32	10	14	42	1.79
15327866--15327948	37	2.3	37	97	2	159	38	18	14	28	1.90
15334540--15334721	91	2.0	91	100	0	364	39	14	5	40	1.69
15339501--15339536	17	2.1	17	90	10	56	38	44	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15346377--15346463	20	4.3	20	86	5	131	39	22	25	12	1.90
15346343--15346451	40	2.7	40	86	0	137	39	22	26	11	1.88
15348256--15348340	44	1.9	44	85	0	116	34	25	21	18	1.96
15357269--15357321	27	2.0	27	96	0	97	37	15	30	16	1.90
15357427--15357490	18	3.6	18	76	16	60	23	29	15	31	1.95
15363141--15363182	20	2.2	19	87	12	59	19	21	4	54	1.62
15392781--15392874	29	3.2	29	78	3	91	23	12	22	41	1.88
15392925--15393075	29	5.2	29	79	1	178	24	12	23	39	1.90
15392925--15393074	58	2.6	58	89	1	212	24	12	23	39	1.90
15392935--15393099	29	5.8	28	78	2	152	26	12	22	38	1.90
15392935--15393099	58	2.9	58	83	8	203	26	12	22	38	1.90
15397499--15397541	22	2.0	22	90	0	68	16	13	32	37	1.88
15397508--15397666	38	4.2	38	78	3	158	19	17	28	34	1.95
15403785--15404012	50	4.6	50	84	2	237	27	21	28	22	1.99
15411680--15411704	9	2.8	9	100	0	50	8	0	0	92	0.40
15420651--15420840	49	3.9	49	80	0	182	34	23	15	26	1.95
15422838--15422913	27	2.8	26	74	7	71	46	19	17	17	1.85
15429587--15429631	19	2.4	19	85	7	56	53	24	8	13	1.68
15434426--15434479	20	2.7	19	80	8	63	44	5	9	40	1.60
15434443--15434479	19	1.9	20	88	5	58	45	5	10	37	1.62
15437803--15438015	67	3.1	67	66	12	171	43	5	5	45	1.49
15437742--15438163	138	3.1	138	90	2	641	42	7	4	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15437796--15438009	71	3.1	70	64	24	162	43	5	5	45	1.49
15443693--15443986	39	7.5	39	79	2	304	18	33	17	31	1.93
15461786--15461820	17	2.1	17	89	5	54	34	2	5	57	1.37
15477888--15477946	22	2.7	22	91	0	91	35	18	27	18	1.94
15478426--15478594	85	2.0	86	83	3	216	27	17	22	33	1.96
15481911--15481967	10	5.2	11	74	21	57	21	35	0	43	1.52
15481928--15481983	22	2.5	22	97	2	103	28	32	0	39	1.57
15483065--15483089	7	3.6	7	100	0	50	28	0	12	60	1.32
15483738--15483772	18	1.9	18	94	0	61	25	31	8	34	1.86
15484185--15484365	45	4.0	45	74	13	154	40	1	12	45	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216