genome.fa.s15.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  181  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56683165--56683193	2	14.5	2	100	0	58	48	0	0	51	1.00
56685705--56685741	19	1.9	19	94	0	65	32	10	5	51	1.60
56691379--56691423	22	2.0	22	95	0	81	17	6	13	62	1.52
56693412--56693456	21	2.0	23	83	8	58	55	0	4	40	1.20
56709393--56709429	19	1.9	19	88	0	56	45	2	24	27	1.66
56712109--56712190	40	2.0	40	92	0	137	59	8	4	26	1.47
56712910--56712946	14	2.5	15	83	16	51	13	29	0	56	1.37
56716537--56716574	20	1.9	19	89	5	58	42	0	0	57	0.98
56720404--56720558	42	3.7	42	78	3	159	46	15	20	17	1.84
56723690--56723839	41	3.7	41	90	0	219	24	28	19	28	1.98
56725577--56725631	18	2.9	19	80	15	62	43	1	0	54	1.10
56725572--56725628	28	2.0	28	90	6	89	38	1	0	59	1.08
56725601--56725642	20	2.0	21	86	4	59	47	4	0	47	1.23
56725820--56725848	14	2.0	15	93	6	51	51	20	0	27	1.47
56729304--56729458	61	2.5	61	81	3	168	39	3	14	42	1.62
56732465--56732516	25	2.0	26	82	10	63	44	3	1	50	1.31
56734220--56734294	6	12.0	6	76	8	60	45	5	48	1	1.33
56734218--56734281	21	2.9	21	77	15	67	46	7	43	1	1.42
56734250--56734294	9	4.7	9	79	15	54	44	2	53	0	1.13
56736141--56736194	20	2.7	21	83	11	69	61	5	0	33	1.19
56736233--56736272	16	2.3	17	87	12	55	67	2	0	30	1.04
56736227--56736274	18	2.6	19	83	3	71	66	2	0	31	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56738930--56739069	41	3.4	40	90	2	208	27	20	29	22	1.99
56739834--56739942	41	2.7	41	82	2	130	20	20	25	33	1.96
56739870--56739981	41	2.7	41	80	2	109	19	20	24	35	1.96
56740383--56740444	31	2.0	32	83	3	81	27	1	16	54	1.51
56740837--56740931	45	2.1	44	82	1	109	32	6	27	33	1.82
56741093--56741127	18	2.0	17	88	5	52	54	0	0	45	0.99
56741051--56741123	27	2.7	27	76	8	76	52	2	0	45	1.15
56741240--56741274	18	2.0	17	88	5	52	54	0	0	45	0.99
56741012--56741286	147	1.9	149	96	1	509	46	3	2	47	1.33
56741260--56741438	55	3.1	54	64	22	128	49	7	2	41	1.43
56741360--56741394	18	2.0	17	88	5	52	60	0	0	40	0.97
56741470--56741501	16	1.9	17	93	6	57	46	0	0	53	1.00
56741223--56741515	120	2.4	120	92	2	482	50	5	2	42	1.36
56743273--56743319	19	2.4	19	96	3	85	44	21	4	29	1.71
56743327--56743419	41	2.2	41	98	1	177	39	33	2	24	1.67
56744047--56744081	14	2.4	14	95	4	61	65	0	25	8	1.21
56744057--56744101	19	2.5	18	82	17	58	66	0	26	6	1.16
56747293--56747330	18	2.1	19	90	5	60	34	13	0	52	1.40
56747545--56747603	21	2.8	21	86	0	82	32	16	44	6	1.74
56748051--56748301	43	5.9	40	80	11	202	27	22	19	30	1.98
56748094--56748302	42	4.9	42	83	6	260	26	22	19	32	1.97
56748094--56748302	85	2.5	85	87	3	296	26	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56748094--56748320	43	5.3	43	84	3	280	26	22	19	30	1.98
56748558--56748625	18	3.8	18	72	14	61	38	2	1	57	1.23
56749234--56749302	29	2.4	29	83	9	95	23	11	31	33	1.90
56754144--56754192	9	5.4	9	82	0	62	42	22	8	26	1.81
56754144--56754192	18	2.7	18	90	0	80	42	22	8	26	1.81
56754144--56754197	27	2.0	28	85	3	74	42	22	9	25	1.83
56756976--56757023	24	2.0	24	100	0	96	29	12	20	37	1.90
56768642--56768675	17	1.9	18	88	5	52	44	8	0	47	1.34
56769147--56769209	23	2.8	23	79	11	60	44	7	1	46	1.42
56769162--56769209	23	2.1	23	84	7	62	43	8	0	47	1.33
56772490--56772791	46	6.5	44	87	8	336	35	13	21	29	1.92
56772431--56772791	98	3.8	94	85	9	473	34	13	21	29	1.92
56772431--56772780	144	2.4	144	95	0	637	34	14	21	30	1.92
56772755--56772863	37	3.0	37	90	2	177	35	16	22	24	1.95
56781558--56781602	20	2.3	20	78	17	51	37	2	6	53	1.40
56781732--56781760	14	2.1	14	93	6	51	37	0	0	62	0.96
56782500--56782536	16	2.3	16	86	13	58	40	0	0	59	0.97
56783884--56783948	24	2.8	23	74	4	67	61	3	1	33	1.21
56784095--56784152	6	9.7	6	98	0	107	46	36	0	17	1.48
56788087--56788164	24	3.3	23	71	16	70	35	2	2	58	1.25
56788081--56788154	13	5.8	12	73	18	53	33	2	1	62	1.18
56788087--56788154	3	22.0	3	74	16	59	33	2	1	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56793111--56793140	13	2.3	13	94	0	51	66	3	13	16	1.37
56793107--56793148	7	6.0	7	80	8	50	64	2	16	16	1.40
56793231--56793330	42	2.4	42	93	0	164	34	12	25	29	1.91
56793231--56793342	42	2.7	42	90	2	163	33	12	25	27	1.92
56795085--56795123	18	2.2	17	86	13	53	33	0	20	46	1.51
56795349--56795421	23	3.2	23	92	0	128	23	21	24	30	1.99
56801649--56801687	18	2.2	17	86	13	53	33	0	20	46	1.51
56801913--56801985	23	3.2	23	92	0	128	23	21	24	30	1.99
56803170--56803693	44	11.8	44	83	2	559	30	15	25	29	1.96
56803174--56804075	133	6.9	133	87	4	1036	29	15	25	29	1.96
56803170--56803693	89	5.9	87	84	4	584	30	15	25	29	1.96
56803589--56803812	119	1.9	119	92	1	378	29	15	24	30	1.96
56803712--56804075	44	8.2	44	83	2	480	29	15	25	30	1.96
56803219--56804034	177	4.7	167	81	6	733	30	15	25	29	1.96
56803441--56804012	296	1.9	296	93	0	991	30	15	25	29	1.96
56803737--56804061	89	3.7	88	81	5	388	30	14	25	28	1.95
56805538--56805599	3	20.0	3	76	15	56	33	3	0	62	1.11
56805538--56805599	10	5.7	11	72	27	53	33	3	0	62	1.11
56805539--56805591	27	2.0	27	88	7	81	32	3	0	64	1.12
56808492--56808826	114	3.0	114	87	2	462	41	11	16	30	1.84
56809207--56809801	110	5.5	108	86	7	775	35	14	15	34	1.88
56809207--56809801	216	2.8	216	88	6	811	35	14	15	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56810072--56810118	22	2.2	22	88	3	69	70	0	0	29	0.88
56815739--56815962	112	2.0	111	92	2	369	24	14	15	45	1.84
56816647--56816711	25	2.6	25	97	0	121	23	24	20	32	1.98
56816697--56816762	25	2.6	25	80	0	78	19	30	15	34	1.93
56820330--56820602	46	6.0	46	91	4	414	27	24	9	37	1.87
56829515--56829562	18	2.7	17	75	9	51	35	16	6	41	1.74
56832556--56832702	39	3.8	39	85	0	186	31	31	20	16	1.95
56832557--56832702	78	1.9	78	86	0	211	32	30	20	16	1.95
56833095--56833136	17	2.4	18	84	11	52	47	14	0	38	1.44
56836516--56836555	20	2.0	20	85	9	55	47	0	10	42	1.37
56836592--56836626	15	2.5	15	90	9	56	51	11	2	34	1.53
56839174--56839234	30	2.0	30	90	0	95	31	18	22	27	1.97
56848514--56848551	20	2.0	20	89	5	60	44	0	0	55	0.99
56849151--56849225	35	2.1	35	87	0	105	34	1	0	64	1.02
56849307--56849343	16	2.3	16	95	0	65	10	54	32	2	1.49
56853434--56853483	25	2.0	25	100	0	100	60	0	12	28	1.32
56866215--56866296	42	2.0	42	90	0	128	32	13	26	26	1.93
56866916--56867500	43	13.1	43	64	11	217	30	22	22	24	1.99
56866867--56867521	89	7.3	89	89	1	954	30	21	23	24	1.99
56866867--56867555	361	1.9	356	87	4	1017	30	21	23	24	1.99
56867540--56867617	41	1.9	41	86	0	111	28	23	21	26	1.99
56867899--56867936	17	2.3	17	86	4	51	81	5	0	13	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56871614--56871765	62	2.5	62	79	8	159	38	5	13	41	1.69
56871648--56871789	62	2.3	62	80	7	153	38	5	13	42	1.68
56879664--56879798	62	2.1	64	81	8	152	38	5	11	43	1.66
56881914--56881953	15	2.7	14	81	11	53	0	22	0	77	0.77
56885529--56885563	3	11.7	3	100	0	70	68	0	0	31	0.90
56885571--56885604	17	1.9	18	88	5	52	82	11	2	2	0.89
56893344--56893390	25	1.9	24	91	4	76	38	4	0	57	1.18
56901002--56901054	19	2.9	18	80	5	70	43	15	15	26	1.85
56903023--56903055	11	2.8	12	86	9	50	63	9	0	27	1.24
56903701--56903739	15	2.6	14	80	11	51	25	7	7	58	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216