genome.fa.s15.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  101  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31536013--31536046	17	2.0	17	94	0	59	64	5	8	20	1.43
31536950--31536988	15	2.4	17	83	16	55	71	0	20	7	1.10
31536957--31536988	15	2.1	16	94	5	57	71	0	21	6	1.07
31541810--31541856	20	2.3	20	81	0	58	29	34	12	23	1.92
31546986--31547038	17	3.5	15	82	7	63	22	11	5	60	1.52
31546985--31547040	15	3.5	16	92	7	96	21	10	5	62	1.47
31546985--31547051	31	2.2	28	89	10	98	20	8	5	64	1.44
31547033--31547077	11	4.0	11	94	5	81	20	0	8	71	1.12
31547033--31547077	23	2.0	23	95	4	83	20	0	8	71	1.12
31558458--31558491	15	2.3	15	90	5	52	8	11	2	76	1.12
31566660--31566721	10	5.9	10	74	10	52	33	32	3	30	1.74
31566660--31566722	21	3.0	21	88	2	90	33	33	3	30	1.74
31568852--31568893	11	3.8	11	100	0	84	73	7	0	19	1.05
31574104--31574135	12	2.7	12	95	0	55	18	21	0	59	1.38
31574117--31574178	27	2.3	27	83	10	74	9	19	1	69	1.25
31574141--31574259	12	10.0	12	69	17	61	8	19	3	68	1.29
31574119--31574177	14	4.3	14	74	16	52	10	16	1	71	1.22
31574139--31574245	6	17.7	6	67	7	56	6	19	3	70	1.26
31575476--31575521	20	2.3	20	84	0	56	23	19	17	39	1.92
31575468--31575541	30	2.5	30	84	8	80	22	20	18	37	1.94
31578115--31578168	20	2.7	20	85	0	72	25	20	16	37	1.93
31578125--31578188	30	2.1	30	85	5	85	23	20	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31581387--31581487	52	1.9	52	95	0	184	32	21	18	26	1.97
31582520--31582550	15	2.1	14	94	5	53	90	9	0	0	0.46
31585086--31585132	23	2.1	23	84	7	62	51	12	4	31	1.59
31588590--31588654	21	3.0	21	86	4	85	35	32	3	29	1.73
31591148--31591330	40	4.6	40	81	8	187	24	20	27	27	1.99
31591148--31591327	79	2.3	81	83	8	219	23	21	27	27	1.99
31591228--31591377	39	3.8	39	81	7	117	24	22	28	24	1.99
31591201--31591367	79	2.1	79	82	4	194	24	20	28	26	1.99
31596568--31596611	21	2.1	21	100	0	88	31	9	15	43	1.79
31599035--31599216	40	4.6	39	78	8	156	26	20	28	25	1.99
31605040--31605088	25	2.0	25	87	0	71	36	2	2	59	1.21
31609693--31609753	16	3.9	16	70	12	54	40	3	1	54	1.27
31612579--31612729	40	3.8	40	80	7	123	23	20	27	27	1.99
31612579--31612757	80	2.3	81	81	11	194	24	20	27	27	1.99
31612631--31612760	40	3.3	39	82	5	154	24	19	26	29	1.98
31629948--31630199	40	6.3	40	91	0	369	25	22	26	25	2.00
31633554--31633857	47	6.4	47	90	3	416	32	9	30	26	1.88
31633708--31633829	22	5.3	22	62	21	61	33	11	29	25	1.91
31636566--31636603	10	3.8	10	83	13	51	28	28	15	26	1.96
31643550--31643582	12	3.0	11	87	12	50	21	0	0	78	0.75
31650261--31650312	23	2.3	22	75	21	54	9	23	1	65	1.32
31659905--31660001	30	3.2	30	72	8	99	28	16	26	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31662181--31662211	12	2.6	12	100	0	62	25	16	12	45	1.83
31662272--31662321	6	8.2	6	81	16	50	2	20	2	76	0.99
31662261--31662331	37	1.9	37	86	11	101	2	18	2	76	1.04
31662257--31662317	16	3.8	16	77	14	63	3	19	1	75	1.03
31664970--31665066	30	3.2	30	74	8	108	28	17	25	27	1.98
31665947--31665990	17	2.7	15	80	13	52	61	0	27	11	1.30
31665967--31666019	23	2.4	22	76	20	56	69	1	18	9	1.25
31671780--31671832	23	2.4	22	76	20	56	9	18	1	69	1.25
31678772--31678834	33	1.9	33	84	12	85	12	25	6	55	1.60
31678849--31678892	18	2.4	18	84	0	61	13	18	0	68	1.22
31678852--31678942	30	3.5	27	78	17	95	13	17	0	69	1.19
31678852--31678948	12	8.6	12	71	24	77	12	18	0	69	1.19
31678893--31678927	15	2.4	15	90	4	54	5	20	0	74	1.02
31678878--31678947	21	2.8	25	72	24	60	12	20	0	67	1.23
31679958--31680018	27	2.3	26	81	13	70	4	16	4	73	1.18
31680039--31680070	11	2.8	12	90	9	57	6	0	6	87	0.67
31681634--31681708	20	3.8	20	73	16	57	40	20	20	20	1.92
31686702--31686748	20	2.3	20	85	0	67	21	12	36	29	1.91
31691207--31691263	30	1.9	30	82	7	71	42	15	10	31	1.81
31695950--31695992	20	2.2	20	86	0	59	53	2	30	13	1.53
31712998--31713041	23	1.9	23	86	9	63	11	27	0	61	1.30
31733567--31733627	10	6.1	10	74	12	54	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31733568--31733628	20	3.0	20	83	9	79	32	13	26	27	1.93
31736598--31736656	14	4.4	14	87	8	79	74	0	8	16	1.05
31736598--31736656	27	2.2	26	90	3	91	74	0	8	16	1.05
31743068--31743099	12	2.7	12	95	0	55	18	21	0	59	1.38
31743083--31743141	14	4.3	14	74	16	52	10	16	1	71	1.22
31743118--31743163	21	2.2	21	84	3	67	6	17	2	73	1.14
31743069--31743172	12	8.4	12	70	17	52	12	19	1	66	1.33
31744195--31744255	20	3.4	19	64	27	51	3	16	3	77	1.04
31744196--31744271	35	2.2	33	81	11	82	6	13	5	75	1.18
31746630--31746677	20	2.4	20	67	0	51	33	18	27	20	1.96
31747184--31747244	20	3.0	20	79	9	61	34	13	24	27	1.93
31749588--31749684	30	3.2	30	73	2	97	26	26	17	28	1.98
31751985--31752046	20	3.1	19	80	15	63	35	12	22	29	1.91
31751989--31752045	10	5.6	10	75	4	51	31	14	24	29	1.94
31756671--31756710	18	2.2	18	86	4	53	12	27	0	60	1.33
31757771--31757817	12	3.7	12	88	11	67	19	10	0	70	1.16
31757771--31757823	26	2.0	27	96	3	99	22	13	0	64	1.28
31757770--31757820	13	3.8	13	85	14	77	19	11	0	68	1.20
31757863--31757906	11	3.9	11	84	3	52	15	6	9	68	1.38
31759983--31760022	18	2.2	18	86	4	53	12	27	0	60	1.33
31761078--31761128	13	3.8	13	94	5	93	19	9	0	70	1.14
31761078--31761131	27	2.0	27	100	0	108	22	11	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31761170--31761213	12	3.8	12	87	6	63	11	4	9	75	1.19
31763296--31763335	18	2.2	18	86	4	53	12	27	0	60	1.33
31764372--31764418	12	3.7	12	88	11	67	19	10	0	70	1.16
31764372--31764424	26	2.0	27	96	3	99	22	13	0	64	1.28
31764371--31764421	13	3.8	13	85	14	77	19	11	0	68	1.20
31764465--31764508	11	3.9	11	85	5	61	13	6	11	68	1.39
31764464--31764505	12	3.6	12	90	6	68	11	4	9	73	1.22
31772076--31772127	23	2.3	22	75	21	54	9	23	1	65	1.32
31776139--31776189	22	2.3	22	78	18	61	9	21	1	66	1.31
31776148--31776193	12	3.9	12	75	13	51	15	23	0	60	1.34
31776163--31776220	28	2.0	30	83	12	77	13	24	0	62	1.32
31782623--31782675	23	2.4	22	75	9	54	9	18	1	69	1.25
31782668--31782707	18	2.2	18	86	0	53	7	25	2	65	1.32
31791228--31791316	23	3.9	23	96	0	160	35	4	26	32	1.77
31792377--31792609	45	5.2	45	96	0	412	38	15	20	25	1.92
31795459--31795516	10	5.7	10	76	11	64	29	27	13	29	1.94
31795459--31795519	20	3.0	20	83	9	79	27	26	13	32	1.93
31796859--31796908	15	3.4	14	75	25	50	76	6	14	4	1.13
31797941--31798046	12	8.7	12	73	13	65	71	3	17	6	1.23
31797941--31798048	6	17.7	6	67	10	58	71	3	18	6	1.23
31797945--31798003	18	3.3	18	76	9	66	72	6	15	5	1.23
31798009--31798046	13	2.8	13	82	17	51	73	0	18	7	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31797927--31798046	12	10.0	12	69	19	63	70	3	18	8	1.27
31798052--31798083	12	2.7	12	95	0	55	59	0	21	18	1.38
31799733--31799790	10	5.7	10	76	11	64	29	27	13	29	1.94
31799733--31799793	20	3.0	20	83	9	79	27	26	13	32	1.93
31804556--31804786	45	5.1	45	93	2	374	38	15	19	25	1.92
31808332--31808365	4	8.0	4	90	9	50	73	2	0	23	0.97
31818260--31818314	12	4.6	12	73	15	51	63	0	23	12	1.29
31820167--31820198	14	2.1	16	88	11	50	9	18	3	68	1.30
31825797--31825843	20	2.3	20	85	0	67	21	12	36	29	1.91
31827502--31827607	48	2.2	48	85	9	137	14	24	1	59	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216