genome.fa.s15.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  121  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38463943--38464169	43	5.3	43	78	3	197	25	16	25	32	1.96
38463943--38464129	85	2.2	87	80	2	225	25	15	25	33	1.95
38463960--38464126	85	2.0	86	85	1	228	26	16	25	30	1.97
38463960--38464126	43	3.9	42	85	2	208	26	16	25	30	1.97
38472614--38472661	16	2.9	16	75	3	51	54	6	6	33	1.51
38479698--38479730	16	2.0	17	88	5	50	60	18	9	12	1.57
38482994--38483033	20	2.1	19	95	4	71	35	7	10	47	1.65
38486076--38486112	6	6.2	6	87	0	56	48	0	51	0	1.00
38486059--38486174	58	2.0	59	91	1	189	43	5	42	8	1.57
38486147--38486192	6	7.0	7	87	9	62	39	0	60	0	0.97
38486134--38486192	13	4.7	13	83	6	68	42	0	57	0	0.98
38488875--38488971	47	2.1	47	98	0	185	56	11	13	18	1.66
38495154--38495183	12	2.5	12	94	0	51	6	30	40	23	1.80
38501920--38502004	43	1.9	45	88	4	129	22	24	2	50	1.61
38503036--38503240	100	2.0	100	86	0	284	37	26	7	27	1.84
38506190--38506365	50	3.5	49	80	6	176	38	14	13	34	1.85
38507076--38507102	14	1.9	14	100	0	54	37	14	0	48	1.45
38515318--38515355	20	1.9	20	100	0	76	55	18	10	15	1.68
38519518--38519555	18	2.1	18	85	9	51	15	36	2	44	1.61
38524957--38525003	22	2.2	22	85	11	62	55	0	4	40	1.19
38529766--38529817	22	2.2	24	78	21	58	34	0	5	59	1.21
38529983--38530022	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38529971--38530037	34	1.9	35	90	3	109	46	13	8	31	1.74
38530006--38530045	14	2.9	14	84	0	53	42	17	7	32	1.77
38535732--38535823	19	4.8	19	91	0	148	38	15	11	34	1.84
38535709--38535823	38	2.9	38	87	5	149	39	15	10	34	1.82
38536382--38536501	45	2.7	45	85	2	161	25	24	22	28	1.99
38536517--38536625	44	2.5	44	77	5	114	30	19	19	31	1.96
38536985--38537109	44	2.8	43	84	9	155	25	25	19	29	1.98
38537122--38537510	88	4.4	87	89	1	580	20	24	27	28	1.99
38537142--38537461	44	7.3	44	66	4	187	21	25	26	26	2.00
38538835--38538867	14	2.3	15	89	5	50	27	33	12	27	1.92
38547571--38547629	30	2.0	30	83	6	75	49	13	6	30	1.68
38565153--38565211	25	2.4	25	80	5	66	25	30	18	25	1.98
38567567--38567635	34	2.0	34	94	0	120	40	8	8	42	1.67
38571135--38571175	21	2.0	21	95	0	73	31	0	19	48	1.49
38581644--38581704	29	2.0	31	84	6	81	39	19	13	27	1.89
38581619--38581797	92	1.9	92	82	4	218	45	13	9	31	1.75
38583595--38583650	28	2.0	28	100	0	112	53	25	10	10	1.67
38586850--38586907	19	3.1	18	75	18	55	1	17	5	75	1.06
38593400--38593439	18	2.2	18	90	0	62	57	5	15	22	1.57
38603215--38603263	6	7.5	6	86	13	62	18	0	61	20	1.35
38608844--38608905	29	2.1	29	82	5	72	20	27	24	27	1.99
38609360--38609393	17	2.1	16	88	5	50	11	26	0	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38613120--38613307	41	4.6	41	83	0	225	25	19	25	29	1.98
38613616--38613734	7	16.7	7	70	10	71	21	1	28	47	1.60
38613693--38613803	7	16.0	7	75	12	77	18	0	36	43	1.57
38613743--38613801	19	3.0	18	79	18	64	16	0	40	42	1.49
38621953--38622002	22	2.3	22	78	0	55	30	36	18	16	1.92
38624977--38625017	21	2.0	21	90	0	64	29	21	29	19	1.98
38632192--38632267	9	8.4	9	81	5	82	27	7	21	43	1.80
38632685--38632762	9	8.6	9	73	6	59	69	3	2	24	1.18
38632684--38632763	19	4.3	18	75	6	72	70	3	2	23	1.16
38632674--38632772	38	2.6	38	80	4	119	68	3	3	25	1.18
38632750--38632823	31	2.4	31	80	6	80	67	2	6	22	1.27
38634444--38634514	37	1.9	37	88	0	106	39	9	14	36	1.79
38637187--38637424	91	2.6	91	94	2	408	28	22	15	33	1.94
38637187--38637424	46	5.3	46	93	2	394	28	22	15	33	1.94
38652309--38652361	22	2.4	23	84	9	74	32	7	16	43	1.76
38654796--38654831	17	2.2	17	90	5	56	2	19	0	77	0.88
38654783--38654831	17	3.1	16	82	5	55	4	16	4	75	1.11
38657260--38657303	22	2.0	23	86	13	65	43	9	6	40	1.63
38661517--38661563	17	2.6	18	80	10	60	17	10	14	57	1.65
38662040--38662077	20	1.9	20	88	0	58	13	2	23	60	1.45
38665579--38665646	29	2.3	29	85	5	93	27	30	13	27	1.94
38665467--38665795	174	1.9	175	89	1	518	31	24	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38665748--38665826	29	2.7	30	78	13	101	29	29	15	26	1.96
38673740--38673807	29	2.3	29	85	5	93	27	30	13	27	1.94
38673909--38673987	29	2.7	30	82	13	110	29	30	15	25	1.96
38673630--38673981	173	2.0	173	88	2	519	31	25	13	29	1.94
38687930--38688051	54	2.3	54	86	0	172	19	27	30	22	1.98
38690439--38690478	18	2.2	18	95	0	71	35	15	15	35	1.88
38690959--38691007	24	2.0	24	100	0	98	36	20	20	22	1.95
38691929--38692026	31	3.2	31	79	0	115	46	20	9	23	1.79
38695722--38695773	25	2.0	26	81	3	61	28	9	13	48	1.74
38695827--38695972	31	4.7	31	71	16	115	34	6	17	41	1.76
38695774--38696002	92	2.5	92	82	2	304	34	7	17	39	1.79
38695978--38696131	31	5.0	31	74	10	111	29	8	16	46	1.76
38702541--38702594	26	2.1	26	100	0	108	35	16	14	33	1.90
38712638--38712934	50	5.8	50	83	3	310	23	29	20	26	1.99
38714914--38714948	18	1.9	18	88	0	52	54	0	0	45	0.99
38715769--38715862	44	2.1	46	88	4	138	44	0	32	22	1.53
38715769--38715865	45	2.2	46	84	5	135	43	0	34	22	1.54
38724157--38724189	14	2.3	15	89	5	50	30	12	30	27	1.92
38724265--38724298	5	7.0	5	93	6	61	82	17	0	0	0.67
38725552--38725775	88	2.5	88	86	0	322	30	28	21	19	1.97
38725907--38726287	173	2.2	173	78	9	393	28	21	22	27	1.99
38725993--38726412	89	4.8	88	76	9	367	26	21	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38725768--38726234	217	2.2	217	92	0	783	28	22	21	27	1.99
38725776--38726446	44	15.3	44	69	14	270	28	21	22	27	1.99
38726860--38726894	18	1.9	18	88	0	52	28	28	22	20	1.98
38728038--38728080	20	2.1	21	86	4	61	25	2	4	67	1.22
38730410--38730454	23	1.9	23	82	13	56	15	8	40	35	1.79
38730496--38730750	124	2.1	124	87	3	361	29	14	23	32	1.95
38730660--38730862	84	2.4	84	95	0	370	23	20	23	33	1.98
38734001--38734154	23	6.2	23	77	18	141	29	0	22	48	1.51
38734009--38734630	28	22.5	28	74	16	491	30	0	22	46	1.54
38734001--38734512	51	9.6	51	77	18	408	29	0	23	47	1.52
38734125--38734196	34	2.1	34	89	0	108	27	0	26	45	1.54
38734174--38734266	22	3.9	23	76	14	89	33	0	22	44	1.53
38734237--38734308	34	2.1	34	92	0	117	25	0	29	45	1.53
38734286--38734453	23	6.9	23	88	6	210	30	0	20	48	1.50
38734424--38734593	34	5.5	33	71	22	154	27	0	25	46	1.57
38734458--38734512	23	2.4	23	93	0	92	27	0	27	45	1.54
38734271--38734623	57	6.4	57	79	15	370	29	0	23	47	1.54
38734574--38734663	24	3.8	24	77	10	96	28	1	24	45	1.60
38734616--38734651	17	2.1	18	89	5	56	30	0	19	50	1.48
38736933--38736988	28	2.0	28	89	6	87	58	3	0	37	1.15
38736985--38737018	17	1.9	18	94	5	61	64	0	8	26	1.22
38737032--38737073	22	1.9	22	90	0	66	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38737027--38737125	52	1.9	52	82	12	123	35	0	32	32	1.58
38737078--38737166	22	4.0	22	85	8	101	42	0	28	29	1.56
38737577--38737622	18	2.6	18	92	0	74	32	8	15	43	1.77
38741925--38741963	13	2.7	14	85	14	53	25	0	30	43	1.55
38752290--38752395	57	1.9	54	84	5	140	39	3	6	50	1.47
38759884--38759926	21	2.0	21	100	0	86	18	16	18	46	1.84
38760425--38760454	14	2.1	14	100	0	60	20	16	13	50	1.78
38766757--38766950	51	3.8	51	78	4	171	27	17	24	31	1.97
38766757--38766950	102	1.9	101	85	3	264	27	17	24	31	1.97
38767114--38767186	37	1.9	37	84	13	96	43	2	21	31	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216