genome.fa.s15.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  137  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43497706--43497846	73	1.9	73	89	2	221	26	18	7	46	1.76
43501217--43501250	11	3.0	11	83	8	50	41	2	8	47	1.50
43505636--43505682	23	2.1	23	85	14	64	44	6	14	34	1.71
43512246--43512717	72	6.6	71	77	4	421	34	20	16	28	1.94
43512241--43512754	143	3.6	142	78	6	475	34	21	16	27	1.95
43512243--43512821	215	2.7	213	78	4	572	35	21	15	26	1.94
43513219--43513306	27	3.3	27	75	4	88	26	21	23	28	1.99
43518894--43518936	19	2.3	19	80	15	54	48	4	0	46	1.22
43522210--43522256	21	2.3	20	78	7	51	63	4	2	29	1.25
43522482--43522572	39	2.4	37	81	13	105	65	3	3	27	1.23
43522864--43522985	47	2.5	48	82	12	135	31	2	0	64	1.12
43522904--43523012	38	2.9	39	78	13	120	29	1	0	67	1.07
43522826--43523085	9	27.7	9	69	15	118	31	3	2	63	1.22
43523223--43523297	38	2.0	38	100	0	150	36	5	21	37	1.76
43533340--43533399	25	2.5	24	79	12	70	36	11	3	48	1.56
43535504--43535575	6	11.8	6	71	19	51	19	2	2	75	1.06
43535528--43535580	13	4.0	13	80	9	54	15	7	3	73	1.20
43538552--43538608	29	2.0	29	82	0	69	17	40	29	12	1.86
43540672--43540848	47	3.8	47	80	1	158	27	22	15	35	1.94
43540668--43540838	94	1.8	94	85	2	245	27	22	15	35	1.94
43542183--43542225	21	2.0	21	83	16	54	16	9	2	72	1.21
43542240--43542264	13	1.9	13	100	0	50	16	8	4	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43544882--43544935	27	2.0	25	86	10	72	14	14	5	64	1.45
43545461--43545497	16	2.2	18	90	9	60	35	0	2	62	1.10
43545781--43545828	22	2.2	22	81	11	62	43	6	0	50	1.27
43545784--43545828	21	2.1	21	87	4	63	44	6	0	48	1.29
43557687--43557820	47	2.8	46	79	5	135	32	29	14	24	1.94
43564707--43565382	44	15.6	43	70	12	251	26	21	21	30	1.98
43564747--43565641	130	6.9	130	89	0	1344	27	20	21	30	1.98
43565568--43565677	44	2.5	44	79	2	132	23	23	19	33	1.97
43571862--43571894	17	1.9	17	93	0	57	60	0	6	33	1.21
43574639--43574700	25	2.5	25	89	0	88	27	29	16	27	1.97
43582062--43582169	50	2.2	50	82	0	126	22	27	18	31	1.97
43582136--43582191	25	2.2	25	87	6	78	19	26	21	32	1.97
43591660--43591736	23	3.3	24	80	5	77	57	3	3	35	1.36
43591671--43591751	24	3.5	24	77	11	71	55	3	4	35	1.39
43593550--43593734	79	2.3	81	84	7	236	24	22	27	25	2.00
43593551--43593734	40	4.6	40	83	9	216	24	22	27	25	2.00
43593603--43593767	79	2.1	79	84	6	210	26	21	27	25	1.99
43601422--43601605	79	2.3	81	81	7	216	25	22	27	25	2.00
43601421--43601612	40	4.8	40	82	6	203	25	21	27	25	2.00
43601474--43601638	79	2.1	79	80	6	183	26	20	26	26	1.99
43604229--43605330	44	24.8	43	74	8	574	28	23	18	29	1.98
43604412--43605330	222	4.1	222	83	3	1059	27	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43604410--43605150	178	4.2	178	82	4	659	27	23	18	30	1.98
43604412--43605340	400	2.3	399	86	3	1264	27	23	18	30	1.98
43604832--43605340	178	2.9	177	83	4	526	28	22	18	30	1.97
43605588--43605634	24	2.0	24	91	0	76	27	25	12	34	1.92
43610429--43610479	24	2.1	25	85	3	68	47	3	5	43	1.46
43610592--43610685	23	4.1	22	81	8	82	60	4	3	31	1.32
43610606--43610700	24	4.2	23	80	9	90	58	4	4	32	1.36
43620560--43620600	5	8.4	5	94	5	75	19	0	0	80	0.71
43620737--43620770	15	2.3	15	90	10	52	23	0	5	70	1.09
43620993--43621433	107	4.1	107	87	4	609	32	16	16	34	1.92
43620993--43621433	219	2.0	213	86	4	609	32	16	16	34	1.92
43625014--43625051	13	2.9	13	96	0	67	31	26	15	26	1.96
43632764--43633352	128	4.5	128	80	8	430	30	21	23	24	1.99
43632836--43633370	44	12.3	44	64	13	160	30	21	23	24	1.99
43633006--43633454	132	3.4	131	89	3	643	28	20	24	25	1.99
43634391--43634463	21	3.6	21	72	27	61	63	0	2	34	1.09
43634392--43634488	39	2.5	38	78	6	113	60	1	2	36	1.15
43635802--43635835	15	2.3	15	90	10	52	23	0	5	70	1.09
43636056--43636497	107	4.1	107	88	4	638	33	16	16	34	1.91
43636056--43636497	220	2.0	213	87	4	636	33	16	16	34	1.91
43637479--43637623	21	7.0	21	69	0	94	43	20	23	13	1.86
43637460--43637643	42	4.4	42	84	2	219	41	18	24	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43637730--43637777	24	2.0	24	91	0	78	20	29	8	41	1.81
43644374--43644419	21	2.2	21	84	0	56	56	4	15	23	1.57
43645259--43645288	3	10.0	3	100	0	60	33	0	33	33	1.58
43653439--43653468	15	1.9	16	93	6	53	80	0	13	6	0.91
43654779--43654848	3	24.3	3	80	8	65	1	31	1	65	1.10
43654779--43654848	17	4.2	17	78	7	72	1	31	1	65	1.10
43654793--43654856	26	2.6	24	85	7	85	3	23	1	71	1.08
43654947--43655922	331	3.0	323	96	2	1810	40	7	13	38	1.73
43660217--43660302	42	2.0	42	88	0	127	51	2	23	23	1.60
43660807--43660851	23	1.9	22	86	13	63	22	11	28	37	1.88
43664789--43664906	57	2.1	57	100	0	236	26	20	13	39	1.89
43667213--43667381	45	3.8	45	82	4	198	39	17	17	25	1.92
43667212--43667381	90	1.9	90	85	2	234	38	17	18	25	1.92
43667215--43667403	90	2.1	90	80	3	211	40	16	16	25	1.90
43667392--43667560	45	3.7	45	81	1	194	46	15	21	16	1.83
43670076--43670283	75	2.8	75	94	0	380	29	26	22	21	1.99
43670186--43670385	102	2.0	102	92	2	339	31	26	22	20	1.98
43677590--43677708	33	3.3	33	68	21	96	30	26	21	21	1.99
43677767--43677917	33	4.5	33	71	22	116	33	28	19	18	1.96
43677719--43677920	102	2.0	102	92	0	332	31	27	21	20	1.98
43679574--43679610	15	2.5	15	90	0	56	8	8	32	51	1.61
43680757--43680802	24	1.9	24	95	0	83	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43680756--43680809	24	2.2	24	86	0	81	35	14	22	27	1.93
43681780--43681841	29	2.1	29	82	5	72	20	8	12	58	1.60
43684000--43684070	37	1.9	37	100	0	142	21	14	21	43	1.87
43688132--43688171	20	2.0	20	90	0	62	45	0	5	50	1.23
43693842--43693896	21	2.7	20	80	5	56	32	12	23	30	1.92
43694774--43694825	16	3.2	16	91	0	77	30	0	34	34	1.58
43694806--43694903	44	2.2	44	83	1	124	34	5	27	32	1.79
43695061--43695095	18	2.0	17	88	5	52	54	0	0	45	0.99
43694948--43695263	157	2.0	156	95	0	569	45	3	4	46	1.40
43695245--43695454	66	3.4	64	68	21	185	49	6	3	40	1.44
43695196--43695492	120	2.5	121	92	3	494	50	4	2	42	1.37
43695316--43695367	15	3.6	15	80	12	56	53	1	0	44	1.11
43695544--43695586	18	2.3	19	88	4	61	51	2	0	46	1.13
43695522--43695687	88	1.9	87	88	4	255	46	3	3	46	1.37
43700407--43700469	23	2.7	23	79	16	76	53	23	6	15	1.65
43716056--43716120	25	2.6	25	82	4	78	32	24	23	20	1.98
43718791--43718873	24	3.5	24	81	6	105	24	22	19	33	1.97
43719019--43719050	17	1.9	16	93	6	55	40	6	18	34	1.76
43723969--43724001	17	1.9	17	88	11	50	75	6	0	18	1.00
43732613--43733173	210	2.7	210	78	0	620	27	18	25	29	1.98
43732613--43733216	140	4.3	140	78	1	573	27	17	25	29	1.98
43732632--43733216	70	8.4	70	79	0	441	26	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43733554--43733583	13	2.3	13	94	0	51	26	20	26	26	1.99
43734426--43734592	40	4.2	40	86	2	187	37	18	26	17	1.93
43736757--43736862	51	2.1	51	96	0	194	34	27	10	27	1.89
43736987--43737100	33	3.5	32	78	4	111	27	44	0	28	1.54
43737710--43737920	117	1.8	117	88	0	323	43	24	9	22	1.83
43738107--43738143	16	2.3	16	90	0	56	35	2	21	40	1.68
43742820--43742979	67	2.4	67	86	2	223	24	25	16	34	1.95
43743735--43743787	13	4.1	13	87	0	79	32	7	24	35	1.84
43751151--43751328	40	4.4	40	77	10	175	23	15	28	32	1.95
43751151--43751325	41	4.3	41	76	8	153	23	14	28	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216