genome.fa.s15.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  42  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11983470--11983510	11	3.3	13	77	22	52	31	0	7	60	1.24
11983470--11983509	12	3.5	11	83	10	53	30	0	7	62	1.23
11983932--11983956	4	6.2	4	100	0	50	0	0	24	76	0.80
11984351--11984398	23	2.1	23	96	0	87	29	10	43	16	1.81
11988333--11988457	18	6.9	18	72	7	83	25	20	22	31	1.98
11988370--11988457	36	2.4	36	75	7	97	26	21	22	29	1.99
11988332--11988448	54	2.2	54	81	3	128	25	20	23	30	1.98
11990651--11990707	30	1.9	29	85	3	78	29	1	1	66	1.12
11991001--11991027	13	2.1	13	100	0	54	25	22	7	44	1.79
11992313--11992353	16	2.6	16	96	0	73	48	0	4	46	1.23
11995600--11995876	104	2.6	105	86	1	369	21	31	23	23	1.98
12001257--12001313	29	2.0	29	96	0	105	38	21	3	36	1.70
12003980--12004023	21	2.0	21	87	12	63	34	25	15	25	1.95
12011436--12011591	42	3.7	42	81	14	169	30	26	17	25	1.97
12013740--12013792	26	2.0	26	100	0	106	22	26	18	32	1.97
12014065--12014123	23	2.5	24	94	2	102	23	38	22	15	1.92
12031428--12031475	23	2.1	23	96	0	87	29	10	43	16	1.81
12035395--12035482	18	4.9	18	76	5	70	27	20	20	31	1.97
12035584--12035689	51	2.1	51	100	0	212	44	5	21	28	1.75
12038109--12038166	22	2.7	21	86	7	80	34	3	18	43	1.68
12039721--12039778	24	2.5	24	83	10	68	43	0	1	55	1.10
12040116--12040159	23	2.0	22	86	4	61	31	2	6	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12040152--12040202	22	2.3	22	83	10	59	41	0	3	54	1.19
12040283--12040316	14	2.2	16	90	10	54	32	0	0	67	0.91
12043739--12043780	16	2.6	16	88	0	66	42	7	4	45	1.52
12044104--12044179	9	8.4	9	84	11	93	39	27	10	22	1.87
12044104--12044179	17	4.2	18	77	12	84	39	27	10	22	1.87
12044105--12044154	26	1.9	26	91	0	82	36	30	10	24	1.88
12044247--12044273	13	2.1	13	100	0	54	29	0	29	40	1.57
12044254--12044352	39	2.5	39	85	4	119	21	2	28	48	1.61
12046193--12046246	3	18.3	3	96	3	101	66	0	0	33	0.92
12047072--12047186	41	2.8	41	86	1	160	17	20	29	33	1.95
12047996--12048051	23	2.4	22	75	18	60	26	5	23	44	1.74
12048061--12048127	23	2.8	24	84	13	84	32	14	19	32	1.92
12049172--12049213	7	6.1	7	83	5	59	38	0	50	11	1.40
12054717--12054745	15	1.9	15	100	0	58	62	13	6	17	1.52
12055242--12055282	20	2.0	20	85	0	55	29	9	21	39	1.86
12058328--12058355	11	2.5	11	100	0	56	21	7	0	71	1.09
12058295--12058398	11	9.5	11	67	25	53	16	10	0	72	1.17
12060146--12060256	43	2.6	43	89	0	186	22	27	16	34	1.95
12060380--12060506	30	4.1	32	83	7	138	48	15	6	29	1.70
12067726--12067756	2	15.5	2	93	0	53	48	0	0	51	1.00
12067824--12067975	41	3.7	41	94	0	268	20	28	21	29	1.98
12067828--12068003	41	4.3	41	86	2	237	22	27	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12067830--12068003	82	2.1	82	89	2	269	22	27	20	29	1.98
12069617--12069663	21	2.2	22	92	3	78	21	38	19	21	1.94
12073410--12073434	13	1.9	13	100	0	50	40	24	4	32	1.73
12074141--12074352	45	4.7	45	81	3	248	31	16	17	33	1.93
12074140--12074360	90	2.5	91	81	3	277	30	17	19	33	1.95
12080980--12081004	8	3.1	8	100	0	50	24	16	12	48	1.79
12081727--12081775	18	2.7	19	81	15	59	71	6	6	16	1.27
12084761--12084792	2	16.0	2	100	0	64	50	0	50	0	1.00
12092742--12092781	14	2.9	13	85	10	53	40	2	10	47	1.50
12092751--12092816	34	1.9	34	87	6	98	34	6	10	48	1.62
12095644--12095692	18	2.8	18	76	14	57	34	0	0	65	0.93
12102726--12102773	24	2.0	24	83	4	60	52	0	0	47	1.00
12106737--12106795	22	2.5	24	72	25	63	42	8	20	28	1.81
12108699--12108740	18	2.4	17	88	11	59	76	2	14	7	1.10
12114411--12114491	41	2.0	41	87	0	117	62	1	1	34	1.11
12119432--12119467	18	2.0	18	89	10	56	77	5	0	16	0.94
12119783--12119815	15	2.1	16	88	5	50	48	3	0	48	1.17
12120201--12120442	35	7.1	34	82	6	267	18	21	18	42	1.90
12120201--12120442	67	3.6	68	82	7	276	18	21	18	42	1.90
12120201--12120442	102	2.4	102	90	1	378	18	21	18	42	1.90
12123225--12123269	20	2.1	22	84	12	58	13	11	8	66	1.44
12127887--12128128	35	7.1	35	81	5	271	19	21	18	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12127887--12128128	67	3.6	68	81	7	267	19	21	18	41	1.91
12127887--12128128	102	2.4	102	89	0	367	19	21	18	41	1.91
12133481--12133555	10	7.4	10	77	15	57	64	0	1	34	1.02
12133453--12133603	40	3.7	40	80	14	164	66	0	1	31	1.00
12133481--12133587	52	2.1	51	89	8	164	65	0	1	32	1.04
12133552--12133576	12	2.1	12	100	0	50	84	0	0	16	0.63
12142046--12142129	44	1.9	44	87	0	123	30	14	22	32	1.94
12142096--12142307	43	5.0	44	78	6	197	28	15	25	30	1.96
12142115--12142276	85	1.9	87	81	8	197	26	16	26	30	1.97
12159664--12159815	81	1.8	84	80	6	186	33	31	6	28	1.83
12161843--12161910	28	2.4	28	92	0	118	23	19	22	35	1.96
12174012--12174049	18	2.1	18	100	0	76	34	28	15	21	1.94
12179692--12179718	3	9.0	3	100	0	54	66	0	33	0	0.92
12180377--12180406	15	1.9	16	93	6	53	33	0	13	53	1.40
12180517--12180587	37	1.9	37	82	0	88	36	4	23	35	1.75
12187412--12187452	9	4.3	9	84	9	55	78	4	9	7	1.10
12188041--12188168	45	3.2	39	76	15	125	19	22	21	36	1.95
12188068--12188217	45	3.3	45	86	0	201	20	20	20	39	1.93
12188197--12188245	6	7.8	6	79	6	53	18	24	16	40	1.90
12189689--12189851	43	3.8	41	80	11	168	31	28	17	22	1.96
12189689--12189851	85	1.9	84	82	9	206	31	28	17	22	1.96
12196356--12196388	2	16.5	2	93	0	57	0	0	45	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12208445--12208502	28	2.1	27	87	6	82	27	17	3	51	1.61
12208576--12208740	86	2.0	82	83	11	210	38	18	9	32	1.84
12208864--12208923	19	3.2	19	76	9	68	60	0	0	40	0.97
12208872--12208928	18	3.1	18	78	11	71	54	0	0	45	0.99
12208920--12208962	19	2.3	19	79	0	50	65	4	2	27	1.25
12209170--12209217	19	2.5	19	81	15	55	33	10	0	56	1.34
12209248--12209289	19	2.3	19	87	4	68	33	4	7	54	1.49
12209287--12209341	20	2.7	20	75	16	51	20	3	5	70	1.22
12209642--12209687	13	3.9	12	83	13	60	65	0	0	34	0.93
12209645--12209682	13	2.9	13	100	0	76	63	0	0	36	0.95
12215814--12215838	12	2.1	12	100	0	50	44	0	0	56	0.99
12215989--12216025	16	2.4	16	90	4	58	56	0	2	40	1.13
12216964--12216991	11	2.5	11	100	0	56	64	7	0	28	1.20
12216993--12217034	22	2.0	22	90	4	68	61	21	7	9	1.50
12217995--12218131	40	3.5	40	78	6	129	34	21	21	23	1.97
12218166--12218283	41	2.9	41	87	6	168	18	22	27	30	1.98
12219102--12219191	33	2.7	33	82	3	110	17	5	42	34	1.73
12219764--12220049	145	2.0	146	91	2	468	39	15	13	31	1.86
12224695--12224859	43	3.8	43	86	3	224	23	18	30	27	1.98
12226032--12226071	15	2.7	16	77	18	50	45	0	2	52	1.14
12226076--12226115	20	2.0	20	85	9	55	62	7	0	30	1.23
12226619--12226672	27	2.0	27	92	0	90	40	3	9	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12230313--12230351	19	2.1	18	90	4	60	64	5	5	25	1.35
12230319--12230367	22	2.2	22	88	0	71	65	6	2	26	1.27
12232183--12232379	44	4.4	44	79	5	209	26	24	17	30	1.97
12232382--12232625	89	2.7	89	92	0	389	22	22	25	29	1.99
12233546--12233862	51	6.3	51	88	0	449	28	24	16	31	1.96
12233546--12233862	102	3.1	102	90	0	494	28	24	16	31	1.96
12236953--12236984	14	2.3	14	94	0	55	3	15	0	81	0.82
12241490--12241540	16	3.2	16	88	0	75	52	11	13	21	1.72
12242651--12242691	3	13.7	3	94	0	73	65	0	2	31	1.05
12249705--12249760	21	2.6	21	74	2	58	25	21	21	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216