genome.fa.s15.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  34  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9711791--9711835	18	2.3	20	85	11	58	64	6	11	17	1.46
9723517--9723553	17	2.1	19	85	10	51	37	2	27	32	1.71
9725565--9725664	49	2.1	48	90	1	155	46	3	6	45	1.43
9732688--9732755	28	2.4	28	92	5	109	29	0	0	70	0.87
9742063--9742118	16	3.5	16	85	0	67	39	3	25	32	1.73
9742283--9742353	37	1.9	37	91	0	115	46	1	2	49	1.25
9742324--9742406	19	4.3	19	68	19	55	54	0	0	45	0.99
9742313--9742455	43	3.3	45	78	14	131	47	0	0	51	1.05
9742373--9742430	15	3.9	14	73	22	55	46	0	0	53	1.00
9742313--9742421	31	3.6	31	77	17	106	51	0	0	47	1.07
9742321--9742430	14	7.3	15	68	20	52	49	0	0	50	1.00
9745898--9745929	15	2.0	17	88	11	50	18	25	31	25	1.98
9749572--9749634	26	2.4	26	89	0	90	42	11	12	33	1.78
9749572--9749647	26	2.9	26	84	3	73	43	9	14	32	1.77
9751818--9751874	17	3.2	17	67	13	51	24	8	10	56	1.61
9751814--9751884	37	1.9	37	97	0	133	21	8	14	56	1.64
9752411--9752476	6	11.0	6	81	12	73	33	0	3	63	1.10
9752417--9752471	16	3.9	14	77	17	69	32	0	1	65	1.03
9752409--9752471	22	3.0	22	90	4	103	33	0	3	63	1.10
9752696--9752745	10	4.7	10	80	11	55	20	2	8	70	1.23
9753079--9753484	203	2.0	204	92	0	681	41	14	10	33	1.80
9767520--9767559	15	2.5	17	77	22	50	62	5	0	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9770510--9770580	27	2.6	27	81	4	97	46	8	1	43	1.42
9770519--9770580	27	2.2	28	88	2	99	46	6	0	46	1.28
9770577--9770617	16	2.5	16	92	4	64	87	7	2	2	0.70
9770649--9770726	27	2.9	27	92	0	120	28	28	29	14	1.95
9771011--9771042	3	10.7	3	100	0	64	34	0	0	65	0.93
9771037--9771165	61	2.1	63	80	12	144	34	0	11	52	1.43
9771075--9771121	19	2.5	19	83	16	62	31	0	12	55	1.38
9776059--9776093	18	2.0	18	88	5	54	5	5	5	82	0.93
9776094--9776163	29	2.5	29	86	9	101	48	0	10	41	1.36
9776200--9776240	19	2.2	19	90	0	64	70	4	0	24	1.06
9776200--9776251	19	2.7	19	87	0	59	67	7	0	25	1.17
9776814--9776848	16	2.1	18	89	10	56	54	8	0	37	1.31
9776953--9777053	10	10.5	10	70	16	79	0	33	0	65	1.00
9776960--9777070	18	6.1	18	74	15	95	0	32	0	66	0.98
9776928--9777061	38	3.5	38	87	5	173	1	32	0	65	1.02
9776997--9777070	14	5.1	14	72	22	55	0	31	0	68	0.89
9776991--9777070	34	2.8	28	75	24	85	0	32	0	67	0.91
9776935--9777055	34	3.4	34	80	12	138	0	32	0	66	0.97
9777002--9777073	10	6.6	10	73	17	54	0	31	0	68	0.90
9777031--9777073	22	1.9	23	85	4	61	0	30	0	69	0.88
9776993--9777074	28	2.7	30	75	19	89	0	32	0	67	0.91
9776972--9777087	42	2.9	40	80	10	105	0	36	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9777121--9777198	27	2.9	27	94	0	129	14	30	28	26	1.95
9777258--9777320	27	2.3	27	91	5	101	47	1	9	41	1.45
9778513--9778565	24	2.2	25	89	3	81	30	11	0	58	1.33
9781195--9781233	17	2.2	18	86	4	53	12	2	5	79	1.00
9785766--9785842	39	2.0	39	89	0	118	42	12	18	25	1.86
9799891--9799955	18	3.4	18	89	6	85	32	7	0	60	1.25
9800174--9800250	10	8.0	10	70	8	61	38	10	3	46	1.56
9806689--9806748	30	2.0	30	100	0	120	23	16	16	43	1.87
9808979--9809096	57	2.1	57	83	13	145	46	7	16	29	1.74
9809676--9809806	10	13.6	10	83	15	107	45	0	0	54	1.05
9809678--9809807	30	4.3	30	80	14	135	44	0	0	54	1.05
9809725--9809806	5	16.8	5	94	5	150	41	0	0	58	0.98
9810747--9810799	25	2.1	25	89	0	79	20	24	20	33	1.97
9821683--9821752	25	2.8	25	86	0	95	27	25	18	28	1.98
9823542--9823590	21	2.3	20	80	16	55	67	12	8	12	1.42
9824890--9824982	33	2.8	33	88	0	123	25	20	11	41	1.86
9828222--9828269	24	2.1	24	85	11	66	41	6	20	31	1.77
9831081--9831107	14	1.9	14	100	0	54	29	3	0	66	1.09
9831103--9831136	11	3.0	11	86	4	50	26	2	5	64	1.30
9831178--9831209	14	2.4	14	94	5	57	31	3	0	65	1.08
9831095--9831289	84	2.3	83	86	8	279	35	2	7	53	1.43
9834145--9834470	46	7.6	46	88	7	392	29	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9834326--9834434	36	3.0	36	93	0	182	30	20	11	37	1.88
9839279--9839331	24	2.2	24	96	0	97	35	15	15	33	1.88
9845781--9845888	10	11.7	9	68	17	53	65	0	3	29	1.16
9846058--9846257	10	20.3	10	69	17	107	32	4	0	62	1.19
9846063--9846206	11	14.2	11	68	17	64	31	3	0	64	1.15
9846103--9846297	29	6.9	28	72	18	127	34	3	0	61	1.18
9846123--9846173	23	2.3	22	87	9	77	35	0	0	64	0.94
9846127--9846257	19	6.6	19	70	22	56	34	3	0	61	1.14
9846193--9846288	10	9.6	10	69	14	56	36	4	0	59	1.17
9846427--9846588	89	1.8	88	85	4	227	34	11	17	36	1.86
9846425--9846608	89	2.1	88	82	3	226	37	10	15	35	1.83
9846461--9846629	89	1.9	89	81	2	205	38	11	13	36	1.81
9849231--9849265	18	2.0	17	88	5	52	31	17	22	28	1.96
9858300--9858341	21	2.0	22	86	9	61	50	7	9	33	1.62
9862834--9862885	24	2.2	24	89	0	77	50	9	3	36	1.54
9866997--9867048	24	2.2	24	89	0	77	50	9	3	36	1.54
9869819--9869866	25	2.0	23	88	8	69	56	0	0	43	0.99
9872193--9872460	96	2.8	98	84	6	332	41	2	15	39	1.63
9872193--9872493	96	3.1	95	81	8	315	40	2	16	40	1.63
9872522--9872792	127	2.1	126	91	0	434	33	15	20	29	1.94
9874861--9875025	55	3.2	55	70	19	192	44	6	4	44	1.48
9874843--9875038	98	2.0	98	98	0	383	45	6	5	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9875585--9875626	18	2.3	18	87	0	57	45	7	28	19	1.76
9878090--9878126	18	2.0	20	89	10	60	51	5	0	43	1.24
9883037--9883204	45	3.7	45	89	0	237	19	22	19	39	1.93
9884392--9884422	6	5.2	6	92	0	53	16	19	0	64	1.29
9891827--9891864	19	2.0	19	89	0	58	57	0	28	13	1.36
9894660--9894712	19	2.9	19	76	15	58	64	3	0	32	1.12
9901130--9901168	20	2.0	19	85	5	51	48	15	0	35	1.45
9911467--9911516	21	2.5	21	78	9	52	60	2	0	38	1.09
9911702--9911747	20	2.2	21	81	14	60	30	0	6	63	1.20
9926454--9926643	101	1.9	99	82	2	236	25	25	16	32	1.96
9953003--9953061	29	2.0	29	93	0	100	49	10	23	16	1.77
9963174--9963299	66	1.9	66	91	0	207	37	11	23	26	1.90
9973569--9973660	11	8.5	11	79	11	84	34	2	11	51	1.51
9973574--9973662	6	16.2	6	82	13	95	34	1	13	50	1.49
9973569--9973640	27	2.6	28	86	4	101	34	2	9	52	1.49
9973576--9973662	33	2.7	32	84	12	106	34	1	13	50	1.50
9973575--9973662	38	2.3	39	84	11	112	35	1	13	50	1.50
9975591--9975689	42	2.4	42	91	3	155	37	12	29	21	1.89
9985849--9985879	2	16.0	2	93	6	55	51	0	48	0	1.00
9987266--9987314	21	2.3	21	82	0	53	42	2	10	44	1.49
9990260--9990296	18	2.0	19	94	5	67	32	16	21	29	1.95
10007622--10007708	21	4.1	21	77	12	88	35	21	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10008859--10008928	28	2.5	27	80	11	70	42	1	0	55	1.08
10008889--10008920	16	2.1	16	94	5	57	40	0	0	59	0.97
10008876--10008928	27	2.1	26	86	10	74	43	0	0	56	0.99
10020579--10020626	21	2.3	21	78	7	53	39	2	20	37	1.65
10027305--10027349	21	2.2	20	88	4	63	26	2	0	71	0.98
10032681--10032749	36	1.9	36	85	5	95	27	28	15	27	1.96
10034632--10034703	29	2.5	28	73	8	72	6	22	4	66	1.33
10034682--10034738	21	2.8	19	82	12	69	5	21	3	70	1.22
10036922--10036996	39	2.0	37	86	5	105	50	12	10	26	1.72
10036956--10037033	30	2.8	27	85	14	113	48	10	10	30	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216