genome.fa.s15.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  43  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12250647--12250725	28	2.8	28	86	0	95	43	16	12	27	1.84
12251915--12251943	5	5.8	5	100	0	58	41	0	0	58	0.98
12252548--12252642	19	4.8	19	88	7	136	35	10	14	38	1.81
12252598--12252665	21	3.0	24	85	12	83	36	8	14	39	1.78
12253147--12253190	17	2.6	17	85	3	63	40	11	0	47	1.39
12253318--12253369	28	2.0	26	85	11	70	38	0	5	55	1.24
12253353--12253411	31	1.9	31	89	6	93	33	3	3	59	1.31
12253563--12253608	4	11.2	4	90	4	65	21	0	4	73	1.00
12256966--12257012	19	2.5	19	89	0	76	65	10	17	6	1.43
12258565--12258966	88	4.6	88	88	0	579	28	27	22	20	1.99
12258614--12258845	44	5.3	44	64	8	130	26	25	24	23	2.00
12259407--12259528	44	2.8	44	82	5	140	29	20	21	28	1.98
12259970--12260041	19	3.4	21	82	15	87	36	8	15	40	1.77
12259976--12260041	21	3.0	24	85	12	81	36	7	16	39	1.77
12260315--12260374	20	2.9	20	76	14	59	26	1	6	65	1.27
12260523--12260566	17	2.6	17	85	3	63	40	11	0	47	1.39
12260644--12260690	24	2.0	24	87	8	69	31	6	0	61	1.21
12260727--12260783	30	1.9	30	89	7	89	35	3	3	57	1.33
12262318--12262359	17	2.6	16	77	7	50	40	0	4	54	1.21
12273139--12273164	6	4.3	6	100	0	52	50	15	0	34	1.45
12277374--12277457	26	3.2	26	81	5	98	34	9	16	39	1.81
12310065--12310099	18	1.9	18	88	0	52	5	48	5	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12314258--12314397	50	2.6	54	81	7	153	25	29	21	24	1.99
12319977--12320108	66	2.0	66	100	0	264	22	13	10	53	1.71
12333108--12333214	51	2.1	53	85	7	148	30	20	5	42	1.75
12336483--12336529	23	2.1	22	84	4	58	40	0	10	48	1.38
12336672--12336753	25	3.3	25	75	16	89	32	19	20	26	1.97
12342631--12342724	25	3.8	25	82	10	97	34	25	18	22	1.96
12353272--12353318	2	23.5	2	100	0	94	51	48	0	0	1.00
12356633--12356657	2	12.5	2	100	0	50	52	48	0	0	1.00
12360410--12360448	20	2.0	21	85	10	55	46	2	0	51	1.14
12369518--12369693	64	2.8	64	77	4	167	25	22	29	22	1.99
12370215--12370337	60	2.0	60	85	0	165	26	17	15	40	1.89
12377898--12377939	21	2.0	21	95	0	75	9	11	14	64	1.50
12378154--12378187	15	2.3	15	100	0	68	52	17	5	23	1.66
12380730--12380819	44	2.0	44	95	0	162	36	5	22	35	1.78
12386934--12386985	21	2.5	21	90	6	79	46	19	25	9	1.80
12388190--12388438	38	6.4	38	81	4	275	18	18	28	34	1.95
12388192--12388438	76	3.2	76	88	6	325	18	19	27	34	1.95
12393782--12394222	114	3.8	114	79	10	512	24	21	26	27	1.99
12394486--12394516	15	2.1	15	93	0	53	19	0	45	35	1.51
12394489--12394564	28	2.6	27	80	14	71	22	0	40	36	1.54
12394754--12394800	14	3.3	15	82	8	62	27	0	31	40	1.57
12395538--12395948	131	3.0	134	85	10	603	42	11	17	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12395677--12395975	148	2.0	147	93	0	508	42	12	17	27	1.84
12395865--12395906	19	2.2	19	91	0	66	64	2	0	33	1.07
12400722--12400768	20	2.4	19	79	13	51	59	2	0	38	1.09
12400850--12401123	43	6.4	43	82	3	266	25	18	27	28	1.98
12402840--12402970	55	2.3	58	86	5	178	45	1	3	49	1.26
12404677--12404757	38	2.1	38	82	11	94	38	0	0	61	0.96
12404718--12404774	27	2.1	27	83	3	71	29	0	5	64	1.15
12405567--12405608	21	2.0	21	86	13	61	28	0	7	64	1.20
12413781--12413819	13	3.0	13	78	14	53	25	15	7	51	1.70
12416894--12416934	21	2.0	21	85	9	57	14	21	29	34	1.93
12421253--12421285	12	2.8	12	86	4	50	18	0	12	69	1.18
12426365--12426682	41	7.8	41	73	8	213	16	23	22	37	1.94
12426364--12426647	82	3.5	80	79	6	300	16	22	21	38	1.93
12427197--12427234	15	2.5	15	86	0	58	18	0	44	36	1.50
12427170--12427237	15	4.9	14	74	13	52	22	0	36	41	1.54
12428963--12428999	10	3.7	10	92	0	65	43	0	13	43	1.44
12431509--12431533	13	1.9	13	100	0	50	40	24	0	36	1.55
12431598--12431757	34	4.7	34	71	21	129	49	10	0	40	1.41
12431623--12431673	22	2.4	22	90	3	86	49	9	0	41	1.36
12431598--12431756	56	3.0	55	83	15	235	49	9	0	40	1.40
12431647--12431747	47	2.1	47	94	0	175	50	7	0	40	1.38
12431623--12431722	22	4.5	22	75	13	78	52	8	0	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12431780--12431910	9	15.9	9	69	17	70	44	16	3	35	1.64
12431772--12431897	25	5.2	25	71	9	91	46	15	2	34	1.59
12431786--12431905	16	7.9	16	66	19	78	45	16	2	35	1.61
12437326--12437489	66	2.5	65	84	4	204	41	19	25	14	1.88
12437475--12437524	21	2.4	21	82	0	55	34	22	38	6	1.78
12437491--12437579	21	4.2	21	83	0	115	32	17	43	5	1.73
12437923--12438183	43	6.0	43	77	3	256	23	16	29	30	1.96
12437943--12438191	87	2.9	86	86	2	329	24	17	29	28	1.97
12437943--12438195	86	2.9	86	85	3	330	24	16	29	29	1.97
12438033--12438230	86	2.3	87	84	0	218	24	18	28	29	1.98
12438460--12438502	22	2.0	22	90	0	68	44	27	16	11	1.82
12438670--12438720	25	2.0	25	100	0	102	52	11	23	11	1.70
12445808--12445852	19	2.4	19	79	20	58	20	8	2	68	1.27
12447651--12447703	3	17.7	3	78	7	54	28	1	7	62	1.33
12447625--12447703	21	4.0	21	78	18	80	25	2	6	65	1.29
12447844--12447873	15	1.9	16	93	6	53	40	3	0	56	1.16
12448049--12448073	2	12.5	2	100	0	50	48	0	0	52	1.00
12450821--12450898	38	2.1	38	100	0	156	24	12	10	52	1.70
12459637--12459714	30	2.6	30	83	0	102	28	28	19	24	1.98
12461496--12461526	15	2.1	15	93	0	53	61	6	0	32	1.21
12463196--12463234	19	2.1	18	85	4	51	20	2	2	74	1.06
12463240--12463283	18	2.5	16	80	20	52	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12463245--12463290	18	2.3	20	85	14	69	36	0	6	56	1.25
12463245--12463295	19	2.7	20	85	14	72	33	0	5	60	1.21
12471783--12471948	39	4.2	39	82	0	215	15	15	33	34	1.90
12473984--12474371	70	5.6	71	80	5	373	30	21	19	29	1.97
12473984--12474371	140	2.8	138	80	5	424	30	21	19	29	1.97
12473939--12474409	70	6.8	70	76	8	327	31	21	18	28	1.97
12474578--12474624	18	2.6	18	82	0	58	27	8	12	51	1.69
12477608--12477650	20	2.2	20	86	0	59	25	11	37	25	1.90
12477871--12477898	11	2.5	11	100	0	56	82	0	17	0	0.68
12478893--12478924	16	2.0	16	100	0	64	37	18	12	31	1.88
12485527--12485683	41	3.9	41	87	0	226	23	24	24	28	2.00
12485750--12485801	26	2.0	27	84	3	70	63	5	7	23	1.43
12486096--12486140	21	2.1	22	83	4	56	24	0	31	44	1.54
12486309--12486360	21	2.4	22	80	6	70	21	0	40	38	1.53
12487076--12487286	105	2.0	105	91	3	347	47	13	10	28	1.76
12487209--12487435	77	2.9	77	96	0	418	46	12	8	32	1.73
12487466--12487605	74	1.9	74	82	10	178	43	13	10	32	1.78
12489938--12490206	43	6.3	43	89	1	355	17	21	32	27	1.96
12489938--12490206	85	3.2	86	86	4	366	17	21	32	27	1.96
12490368--12490615	43	5.8	43	89	1	338	28	30	18	22	1.97
12495669--12495823	41	3.8	41	88	0	229	31	29	20	19	1.97
12495875--12495990	40	2.9	39	79	3	124	22	20	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12497636--12497661	13	2.0	13	100	0	52	53	15	0	30	1.42
12498124--12498515	126	3.1	125	85	2	520	30	15	16	38	1.90
12498576--12498690	34	3.4	33	80	4	140	44	13	0	41	1.44
12498567--12498697	68	1.9	68	81	7	160	45	14	0	40	1.45
12498570--12498697	34	3.8	34	78	9	138	44	14	0	41	1.44
12500486--12500525	21	1.9	21	84	0	53	27	27	12	32	1.93
12513482--12513523	21	2.0	21	86	9	59	59	33	7	0	1.25
12514179--12514211	3	11.0	3	100	0	66	66	0	33	0	0.92
12515909--12515954	22	2.1	22	87	0	65	45	2	30	21	1.64
12518377--12518426	21	2.4	20	78	12	55	14	6	2	78	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216