genome.fa.s15.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  156  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49264672--49264706	16	2.3	15	95	5	61	40	0	0	60	0.97
49265257--49265352	10	9.5	10	79	12	99	56	2	0	41	1.11
49265257--49265331	21	3.5	21	94	1	123	57	2	0	40	1.13
49265264--49265324	31	2.0	31	87	6	79	57	3	0	39	1.15
49265268--49265348	21	4.1	19	75	17	76	56	2	0	40	1.12
49265310--49265376	19	3.4	19	80	13	64	58	0	0	41	0.98
49265331--49265370	21	1.9	21	89	0	62	60	0	0	40	0.97
49265334--49265372	11	3.5	11	85	3	51	64	0	0	35	0.94
49272754--49272778	8	3.1	8	100	0	50	76	0	24	0	0.80
49273632--49273693	14	4.1	15	77	20	67	67	1	16	14	1.31
49273632--49273675	7	6.1	7	82	12	54	70	0	15	13	1.17
49274926--49275016	44	2.1	44	85	4	130	30	20	24	24	1.99
49274972--49275365	128	3.1	128	88	5	573	33	19	22	24	1.97
49275492--49275610	45	2.7	44	75	11	107	27	21	26	25	1.99
49275491--49275870	44	8.7	44	67	12	129	29	18	24	27	1.98
49275358--49275877	218	2.4	218	86	0	700	29	18	24	27	1.98
49280346--49280966	289	2.2	282	79	8	639	39	11	13	35	1.81
49283733--49283766	17	2.0	17	88	0	50	55	8	2	32	1.45
49295836--49295877	13	3.5	13	81	18	63	50	14	0	35	1.43
49295837--49295886	23	2.2	23	89	7	75	54	14	0	32	1.40
49299628--49299660	13	2.5	13	100	0	66	36	0	15	48	1.45
49304016--49304067	23	2.3	23	89	0	77	42	23	7	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49313138--49313171	8	4.0	8	88	11	50	73	0	2	23	0.97
49321512--49321541	15	2.1	14	93	6	51	63	6	3	26	1.35
49325313--49325427	39	3.0	38	73	6	106	28	5	24	41	1.76
49332746--49333425	54	12.6	54	74	8	289	26	20	14	38	1.91
49332638--49333425	108	7.3	108	75	6	517	27	20	14	38	1.91
49332901--49333124	105	2.1	106	82	5	274	28	18	13	38	1.89
49332969--49333425	162	2.8	163	81	3	458	26	20	13	38	1.90
49333982--49334902	507	1.8	507	82	3	1190	31	16	17	34	1.92
49335083--49335108	13	2.0	13	100	0	52	23	46	7	23	1.78
49336040--49336140	3	32.7	3	74	9	78	26	5	3	63	1.35
49336344--49336408	27	2.4	27	80	10	71	36	9	4	49	1.56
49336897--49337096	107	1.9	106	89	2	310	32	14	16	37	1.89
49340778--49340811	16	2.2	16	89	5	52	76	0	14	8	1.01
49341656--49341689	7	5.0	7	92	7	61	70	0	14	14	1.17
49342920--49343424	88	5.7	88	92	0	769	28	25	22	23	2.00
49343202--49343644	220	2.0	220	89	1	674	28	25	22	23	1.99
49343022--49343801	132	5.9	132	68	13	517	27	25	23	24	2.00
49343375--49343801	88	4.9	90	88	4	396	27	25	23	24	2.00
49343110--49343732	308	2.0	308	91	0	996	27	25	22	23	2.00
49343022--49343781	396	1.9	396	92	0	1279	27	25	23	24	2.00
49343418--49343801	88	4.4	87	93	0	606	26	25	23	24	2.00
49343808--49344209	128	3.1	128	89	0	599	33	19	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49344236--49344447	113	1.9	113	90	0	343	32	18	19	29	1.96
49345954--49346057	3	33.7	3	75	9	84	26	5	3	63	1.34
49346261--49346321	27	2.3	27	80	8	72	37	8	4	49	1.54
49347743--49347909	54	3.1	54	78	6	153	24	19	18	37	1.94
49347438--49348354	452	2.0	447	82	5	1107	31	16	18	33	1.93
49348401--49348539	54	2.6	54	81	7	165	25	20	15	38	1.91
49348834--49348989	54	2.9	54	80	3	163	28	19	14	37	1.91
49348895--49349023	54	2.4	54	81	0	141	33	20	10	35	1.86
49349040--49349183	54	2.7	55	80	3	157	26	23	14	35	1.93
49349036--49349206	54	3.2	54	75	6	141	27	23	12	36	1.91
49348999--49349206	108	1.9	108	80	5	242	28	22	12	36	1.91
49349455--49349660	54	3.8	54	75	3	191	29	19	12	38	1.89
49349866--49350040	54	3.3	53	81	3	199	25	21	14	38	1.92
49349273--49350069	380	2.1	380	81	3	915	32	16	16	34	1.92
49350287--49350523	54	4.4	54	76	0	204	26	21	14	37	1.92
49350288--49350523	108	2.2	108	83	0	292	26	21	14	37	1.92
49351382--49351505	54	2.3	53	83	5	142	27	16	16	39	1.90
49351843--49352036	54	3.6	54	69	4	147	27	19	13	39	1.90
49352350--49352489	54	2.6	54	81	0	145	27	19	13	40	1.89
49352399--49352576	54	3.3	54	81	3	169	27	22	12	37	1.91
49352879--49353009	55	2.4	54	82	2	154	27	22	12	37	1.91
49349866--49353513	507	7.2	507	77	4	3057	31	17	16	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49353491--49353554	29	2.2	29	85	0	83	23	18	14	43	1.86
49353522--49353671	54	2.8	54	77	6	169	30	21	12	36	1.90
49354140--49354290	54	2.8	54	82	3	162	29	22	13	34	1.93
49354213--49354315	54	1.9	54	85	0	143	29	21	11	37	1.89
49354690--49354824	54	2.5	54	80	0	144	25	22	14	38	1.91
49354272--49355195	510	1.8	509	81	5	1175	32	16	16	34	1.92
49355106--49355220	54	2.1	54	80	3	133	25	13	18	43	1.85
49354975--49355413	243	1.8	242	79	7	514	30	17	15	36	1.91
49355422--49355530	54	2.0	54	87	3	157	27	18	15	38	1.91
49355907--49356066	54	3.0	54	79	1	178	26	18	15	39	1.90
49356069--49356190	54	2.3	54	80	0	136	27	17	13	41	1.87
49356480--49356597	54	2.2	55	80	4	132	27	23	13	34	1.93
49356527--49356777	108	2.3	108	80	4	256	27	21	13	37	1.91
49356502--49356784	54	5.2	54	74	6	232	27	21	13	37	1.91
49357877--49358059	54	3.4	53	81	6	197	26	20	15	37	1.93
49357808--49358059	108	2.3	107	76	4	245	27	21	14	36	1.92
49357969--49358088	54	2.2	54	87	0	168	24	19	17	39	1.92
49358366--49358517	54	2.8	54	86	1	198	25	19	13	40	1.89
49357970--49358914	397	2.4	394	82	4	1107	31	16	17	34	1.93
49358763--49358970	54	3.9	54	79	0	218	25	21	14	38	1.91
49359249--49359371	54	2.3	54	81	2	131	30	18	13	36	1.90
49358387--49359416	455	2.3	450	79	5	1128	31	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49360203--49360532	54	6.1	53	70	9	193	26	20	14	37	1.92
49360251--49360548	108	2.8	108	82	0	317	26	20	14	38	1.91
49360343--49360548	54	3.8	54	80	0	196	27	22	13	36	1.92
49360353--49360603	108	2.3	108	81	1	270	27	22	13	36	1.92
49360836--49361221	54	7.1	55	79	3	203	26	21	14	37	1.92
49360889--49361221	108	3.1	108	80	1	409	27	21	14	36	1.92
49360887--49361221	162	2.1	162	83	1	420	27	21	14	37	1.92
49360929--49361242	54	5.8	53	74	8	249	28	20	13	37	1.90
49361163--49361995	453	1.8	453	86	1	1218	32	17	18	32	1.94
49361163--49362043	456	1.9	453	85	1	1206	31	17	18	32	1.94
49361944--49362151	54	3.9	54	77	3	186	25	18	18	37	1.94
49361037--49362132	456	2.4	453	81	2	1196	31	17	17	33	1.94
49362085--49362253	54	3.1	54	70	3	142	27	21	14	36	1.92
49362085--49362296	108	2.0	107	80	5	239	28	22	12	36	1.91
49363366--49363522	54	2.9	54	75	7	140	31	18	12	36	1.89
49364369--49364715	54	6.4	54	79	4	349	24	21	15	38	1.93
49364369--49364715	162	2.1	162	82	3	403	24	21	15	38	1.93
49364408--49364727	108	3.0	108	83	5	396	24	22	16	37	1.94
49365031--49365329	54	5.6	54	77	4	255	25	20	17	37	1.93
49365091--49365348	108	2.4	107	82	4	297	25	20	15	37	1.92
49364001--49365505	612	2.5	610	81	4	1677	29	18	18	34	1.94
49366221--49366503	46	6.1	46	92	0	467	40	18	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49367220--49367338	41	3.0	40	79	6	123	32	29	13	24	1.93
49372625--49372680	25	2.2	26	79	17	73	62	0	1	35	1.06
49373233--49373274	22	2.1	19	86	13	57	52	0	2	45	1.13
49373335--49373395	30	2.1	30	84	3	79	52	8	6	32	1.57
49381128--49381495	182	2.0	182	93	0	628	39	15	10	34	1.82
49383567--49383642	39	1.9	39	100	0	152	21	18	23	36	1.95
49383721--49383905	54	3.4	54	81	3	192	25	17	17	40	1.91
49383806--49384568	346	2.2	345	80	6	871	31	17	17	33	1.93
49384502--49384807	54	5.7	54	74	4	206	25	20	14	39	1.90
49384501--49385005	108	4.7	108	76	4	311	25	19	15	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216