genome.fa.s15.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  211  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65390246--65390295	13	3.9	13	80	15	59	2	24	0	74	0.93
65390245--65390292	25	2.0	25	83	4	62	2	25	0	72	0.95
65390375--65390419	16	2.9	16	86	3	56	0	20	4	75	0.97
65390860--65390955	29	3.3	30	79	4	106	47	5	17	29	1.69
65390827--65390958	29	4.5	29	74	6	95	43	7	17	31	1.77
65391152--65391184	5	6.8	5	93	6	59	78	0	0	21	0.75
65391152--65391181	9	3.2	9	95	4	51	80	0	0	20	0.72
65391156--65391184	14	2.1	14	100	0	58	79	0	0	20	0.74
65402345--65402414	31	2.3	31	80	5	79	54	10	7	28	1.60
65402566--65402607	21	2.0	21	85	0	57	57	4	2	35	1.33
65404774--65404804	3	10.3	3	100	0	62	0	35	0	64	0.94
65411185--65411228	20	2.1	21	83	4	54	36	4	11	47	1.60
65415644--65415710	19	3.5	19	70	8	55	52	4	13	29	1.60
65417060--65417088	3	9.7	3	100	0	58	34	0	0	65	0.93
65421182--65421315	47	2.8	48	76	6	139	36	12	21	29	1.90
65442799--65442833	15	2.3	15	85	0	52	54	0	17	28	1.43
65444227--65444293	33	2.0	33	94	0	116	11	23	8	55	1.64
65444239--65444308	33	2.3	32	83	11	85	10	27	7	55	1.58
65446575--65446638	22	2.9	22	83	0	74	42	20	25	12	1.87
65447991--65448039	25	2.0	25	92	8	82	24	24	8	42	1.81
65450028--65450071	22	2.0	21	95	4	79	20	9	22	47	1.78
65450484--65450511	14	2.0	14	100	0	56	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65450644--65450683	14	2.9	14	84	0	53	42	17	7	32	1.77
65450609--65450675	34	1.9	35	87	3	100	46	11	8	32	1.72
65457588--65458363	275	2.8	269	81	6	837	33	27	7	31	1.84
65459990--65460054	29	2.1	29	83	8	76	60	1	0	38	1.07
65459972--65460058	32	2.6	34	74	20	85	57	1	1	40	1.14
65469334--65469385	10	5.0	10	73	17	52	32	0	1	65	1.04
65469378--65469419	21	2.0	21	85	0	57	47	2	2	47	1.28
65472363--65472392	6	5.2	6	92	8	53	86	0	13	0	0.57
65472360--65472394	12	2.8	12	86	4	52	85	0	14	0	0.59
65478468--65478519	26	2.0	26	100	0	104	23	19	30	26	1.98
65483826--65483858	16	2.0	17	88	5	50	39	0	6	54	1.25
65493120--65493738	223	2.7	230	82	5	715	38	18	18	24	1.93
65497188--65497240	26	2.0	27	81	7	63	32	18	5	43	1.74
65502797--65502826	12	2.5	12	100	0	60	50	10	0	40	1.36
65505739--65505896	46	3.6	46	81	10	195	34	13	22	29	1.92
65505774--65505852	41	1.9	41	94	0	140	37	13	18	29	1.90
65507553--65507586	17	2.0	17	94	0	59	44	17	14	23	1.86
65513993--65514036	20	2.2	21	88	11	67	31	0	2	65	1.05
65514173--65514220	22	2.2	21	85	7	60	66	2	2	29	1.14
65515323--65515362	21	2.0	21	90	5	64	62	7	5	25	1.42
65518563--65518612	27	1.9	26	88	8	75	34	16	8	42	1.77
65518745--65518787	21	2.1	20	87	12	61	60	4	0	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65521920--65521970	24	2.1	24	82	7	59	35	13	15	35	1.87
65522445--65522583	40	3.5	38	82	12	149	64	0	2	32	1.08
65522478--65522537	9	6.3	9	73	17	50	70	0	1	28	0.97
65522439--65522569	29	4.0	31	74	20	113	62	0	3	34	1.11
65522467--65522578	39	2.8	40	91	2	190	63	0	3	33	1.12
65537315--65538203	381	2.3	381	96	0	1652	33	16	25	24	1.96
65540503--65541066	222	2.5	222	88	1	844	35	13	25	25	1.92
65545374--65545821	158	2.7	163	77	10	439	34	12	16	37	1.86
65545657--65545686	15	2.0	15	100	0	60	20	13	20	46	1.83
65552432--65552515	42	2.0	42	93	4	143	22	5	8	63	1.45
65554254--65554279	4	6.5	4	100	0	52	23	0	0	76	0.78
65554494--65554585	27	3.2	27	69	20	78	53	10	16	19	1.72
65554495--65554669	60	2.9	61	78	12	191	49	13	16	21	1.78
65559660--65559852	66	3.0	66	85	3	241	44	8	31	16	1.78
65564408--65564438	16	1.9	16	100	0	62	32	6	6	54	1.51
65567532--65567565	6	5.7	6	92	0	50	29	5	35	29	1.81
65571040--65571171	30	4.4	30	83	2	149	28	25	5	40	1.77
65571040--65571179	60	2.3	59	85	4	174	30	23	5	40	1.76
65571544--65571590	24	2.0	24	82	0	58	70	0	27	2	0.99
65571676--65571715	15	2.7	14	84	7	53	85	12	2	0	0.71
65571864--65571933	16	4.4	16	70	21	58	80	0	20	0	0.72
65571864--65571932	11	6.5	11	78	18	51	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65571869--65571930	31	1.9	33	87	6	92	79	0	20	0	0.74
65571864--65571927	22	3.0	21	80	11	76	79	0	20	0	0.73
65572067--65572108	11	3.4	12	83	9	50	23	0	2	73	0.94
65572280--65572321	21	2.0	20	90	4	66	35	14	9	40	1.78
65572280--65572321	20	2.1	19	86	8	57	35	14	9	40	1.78
65572426--65572495	36	1.9	36	88	5	106	30	14	11	44	1.80
65572476--65572607	36	3.7	35	79	7	115	30	15	7	46	1.73
65572426--65572778	17	19.9	17	67	15	182	29	15	10	44	1.80
65572655--65572697	21	2.0	21	86	0	59	41	11	6	39	1.68
65572770--65572829	18	3.5	18	73	13	63	26	8	11	53	1.65
65572477--65572834	34	10.2	33	71	13	152	30	13	10	44	1.78
65572721--65572834	33	3.4	33	82	8	106	29	10	13	46	1.76
65572783--65572835	15	3.3	15	73	14	52	41	7	9	41	1.66
65574814--65574849	4	9.0	4	93	0	63	25	22	0	52	1.47
65578811--65578882	9	7.8	9	79	4	63	83	9	5	1	0.86
65578823--65578892	18	3.8	18	75	16	72	81	8	8	1	0.94
65578812--65578893	10	8.6	9	77	17	60	82	8	7	1	0.88
65579747--65580435	77	8.8	77	87	6	958	28	15	18	38	1.90
65579750--65580435	158	4.4	156	86	7	930	27	15	18	38	1.91
65579747--65580435	237	2.9	233	88	5	1009	28	15	18	38	1.90
65580620--65580759	30	4.7	30	88	1	192	31	25	5	38	1.77
65580620--65580759	59	2.3	60	86	1	192	31	25	5	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65581113--65581158	3	15.0	3	82	13	58	63	0	36	0	0.95
65581116--65581144	10	2.9	10	100	0	58	62	0	37	0	0.96
65581113--65581158	13	3.7	13	81	18	62	63	0	36	0	0.95
65581262--65581296	6	5.8	6	90	10	54	82	14	2	0	0.77
65581251--65581296	18	2.5	18	82	13	58	82	13	4	0	0.81
65581444--65581513	11	6.5	11	81	15	60	80	0	20	0	0.72
65581456--65581517	14	4.5	13	73	18	54	79	0	20	0	0.74
65581638--65581662	9	2.8	9	100	0	50	20	12	12	56	1.67
65581674--65581713	21	1.9	21	84	0	53	25	0	2	72	0.97
65581881--65581922	21	2.0	20	95	4	75	35	16	9	38	1.81
65581881--65581922	20	2.1	19	91	8	66	35	16	9	38	1.81
65582036--65582424	17	22.0	18	68	17	167	30	13	10	45	1.77
65582028--65582096	36	1.9	35	88	2	102	28	14	11	44	1.80
65582028--65582379	17	19.9	17	69	12	201	30	13	10	45	1.78
65582322--65582429	33	3.2	33	83	10	105	27	11	12	48	1.76
65584438--65584504	34	1.9	35	87	3	100	31	10	13	44	1.77
65584455--65584492	20	1.9	20	88	0	58	28	10	13	47	1.76
65590046--65590113	30	2.3	29	84	2	82	50	2	10	36	1.52
65590055--65590113	29	2.0	30	86	3	84	52	1	8	37	1.42
65597339--65597409	35	2.0	35	100	0	142	14	2	19	63	1.42
65600456--65600542	32	2.7	32	71	11	79	39	9	11	40	1.73
65604830--65604868	17	2.2	19	86	9	55	64	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65606971--65607009	3	13.0	3	83	0	51	5	30	2	61	1.31
65608137--65608659	204	2.6	205	89	1	782	26	14	21	37	1.92
65611969--65612029	31	2.0	31	90	0	95	19	9	24	45	1.80
65624030--65624079	19	2.6	19	78	6	57	64	6	8	22	1.43
65625234--65625420	96	1.9	96	86	0	266	29	30	14	24	1.95
65625318--65625724	123	3.3	122	84	3	532	28	31	14	25	1.95
65625318--65625674	120	3.0	119	86	2	516	28	31	14	25	1.94
65626591--65626639	22	2.2	22	88	3	71	42	10	6	40	1.63
65626603--65626649	22	2.1	22	96	0	85	31	10	8	48	1.68
65634009--65634320	90	3.5	85	78	11	286	47	16	9	26	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216