genome.fa.s15.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  200  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62166378--62166456	25	3.2	24	75	7	86	34	18	26	20	1.96
62166354--62166456	50	2.1	49	87	1	143	33	19	26	20	1.96
62167277--62167302	3	8.7	3	100	0	52	0	30	0	69	0.89
62168906--62168944	19	2.2	19	86	9	55	38	2	2	56	1.27
62174001--62174174	34	5.1	34	82	0	186	32	12	13	42	1.81
62177871--62177989	60	2.0	60	94	0	211	47	10	9	31	1.70
62177895--62177990	31	3.2	30	70	5	86	45	11	10	32	1.74
62184192--62184253	32	2.0	31	84	9	81	61	1	3	33	1.22
62185842--62186634	43	18.3	43	78	5	565	26	21	21	31	1.98
62185869--62186462	175	3.4	171	86	3	701	27	21	20	30	1.98
62185960--62186634	218	3.1	218	94	0	1188	27	21	20	30	1.98
62185990--62186634	175	3.7	174	83	3	629	27	21	20	31	1.98
62187431--62187652	108	2.1	108	84	1	293	50	7	15	26	1.71
62199189--62199250	32	2.0	31	84	9	81	61	1	3	33	1.22
62207299--62207325	13	2.1	13	100	0	54	59	0	0	40	0.98
62211554--62211604	25	2.0	25	96	0	93	29	11	29	29	1.92
62211909--62211966	18	3.2	18	80	11	73	25	0	3	70	1.03
62211909--62211966	9	6.5	8	76	20	53	25	0	3	70	1.03
62215111--62215150	21	1.9	21	85	10	55	60	2	2	35	1.24
62218849--62218916	31	2.3	30	79	5	84	41	13	14	30	1.84
62222073--62222103	6	5.2	6	100	0	62	0	16	48	35	1.46
62222986--62223051	11	5.9	11	80	16	66	42	1	31	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62222986--62223054	22	3.0	23	80	18	81	42	1	33	23	1.63
62223004--62223050	11	4.2	11	88	2	67	42	2	34	21	1.65
62224933--62225017	23	3.6	24	88	4	120	47	3	24	24	1.68
62226605--62226772	83	2.0	82	87	1	237	30	5	12	51	1.63
62228563--62228628	13	5.1	13	76	7	71	33	6	24	36	1.80
62229911--62229955	15	3.0	15	90	0	72	35	22	6	35	1.80
62230606--62230790	72	2.6	72	89	1	291	55	16	5	23	1.62
62231939--62231973	7	4.9	7	89	3	52	80	0	17	2	0.84
62231933--62231973	14	2.9	14	88	3	55	75	0	21	2	0.92
62237807--62237852	21	2.2	20	84	3	56	45	10	2	41	1.51
62243375--62243435	15	4.3	14	78	16	63	42	32	24	0	1.55
62243375--62243447	15	5.3	15	73	15	59	41	35	23	0	1.55
62243476--62243514	18	2.2	18	86	9	53	30	0	43	25	1.55
62243518--62243575	3	19.3	3	85	0	80	27	39	32	0	1.57
62243522--62243575	21	2.6	21	96	0	99	25	40	33	0	1.56
62244714--62244754	21	2.0	21	90	0	64	34	29	14	21	1.93
62261898--62261922	9	2.8	9	100	0	50	88	0	0	12	0.53
62262064--62262105	19	2.2	20	82	4	50	71	2	0	26	0.98
62264522--62264570	24	2.0	24	84	0	62	46	2	4	46	1.33
62282219--62282313	46	2.1	46	93	0	163	27	27	9	35	1.88
62285104--62285128	3	8.3	3	100	0	50	68	0	0	32	0.90
62285286--62285338	27	2.0	27	86	13	76	81	7	1	9	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62285283--62285332	18	2.8	17	82	11	55	82	10	0	8	0.86
62285375--62285426	22	2.4	21	87	6	68	73	1	1	23	1.04
62288585--62288615	2	15.5	2	100	0	62	48	0	0	51	1.00
62293480--62293528	24	2.0	24	96	0	89	32	10	4	53	1.54
62293824--62293858	4	8.8	4	100	0	70	25	0	25	48	1.51
62301659--62301687	14	2.0	15	93	6	51	75	10	0	13	1.04
62305652--62305700	23	2.4	21	81	18	59	75	6	4	14	1.14
62306948--62306997	24	2.2	22	89	7	73	2	18	2	78	0.95
62306964--62306999	17	2.1	17	94	0	63	0	16	2	80	0.83
62307434--62307473	14	2.9	13	89	10	62	0	7	10	82	0.84
62307434--62307491	21	2.8	20	89	7	82	0	6	10	82	0.83
62307442--62307489	14	3.4	14	88	8	62	0	6	10	83	0.81
62313935--62313987	22	2.3	23	87	9	74	45	5	22	26	1.74
62314283--62314323	19	2.1	20	86	4	57	68	4	7	19	1.32
62314297--62314338	20	2.1	20	82	8	50	66	4	2	26	1.23
62315151--62315225	25	3.1	25	88	5	102	38	18	24	18	1.93
62317579--62317620	19	2.2	19	87	8	59	71	2	0	26	0.98
62322556--62322628	23	3.3	23	68	27	75	49	31	4	15	1.63
62322542--62322631	44	2.0	44	97	0	171	48	31	4	15	1.65
62332561--62332604	14	2.9	14	80	12	52	54	0	2	43	1.12
62338480--62338851	120	3.1	119	87	1	534	18	20	29	31	1.96
62352836--62352860	12	2.1	12	100	0	50	24	8	24	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62356503--62356699	98	2.0	98	93	0	340	29	9	23	38	1.86
62358309--62358359	3	17.3	3	83	4	50	41	1	0	56	1.10
62364460--62364518	14	4.4	13	76	19	59	83	13	3	0	0.78
62364464--62364530	17	3.9	17	75	13	66	82	11	5	0	0.84
62364482--62364532	21	2.3	21	90	10	75	82	9	7	0	0.85
62365026--62365075	14	3.5	14	80	20	59	74	0	12	14	1.09
62366495--62366867	50	7.5	50	66	6	200	28	22	25	23	1.99
62366843--62367001	50	3.2	50	69	7	151	31	19	23	25	1.98
62366486--62367028	100	5.4	100	87	5	751	29	22	24	23	1.99
62367377--62367409	17	2.0	17	88	5	50	51	39	0	9	1.34
62368728--62368764	19	1.9	19	94	0	65	35	0	18	45	1.50
62368976--62369315	41	8.3	41	90	0	527	29	20	28	22	1.98
62368976--62369309	82	4.1	82	100	0	668	29	20	28	22	1.98
62375620--62375656	19	1.9	19	94	0	65	35	0	18	45	1.50
62375867--62376206	41	8.3	41	90	0	527	29	20	28	22	1.98
62375867--62376200	82	4.1	82	100	0	668	29	20	28	22	1.98
62378249--62378299	3	17.3	3	83	4	50	41	1	0	56	1.10
62387837--62387992	76	2.1	76	92	2	260	35	9	8	46	1.68
62391601--62391639	15	2.6	15	91	0	60	53	10	15	20	1.70
62394346--62394401	18	3.2	17	80	7	67	33	19	1	44	1.61
62396168--62396246	30	2.6	31	80	6	90	56	5	1	36	1.29
62397882--62397919	17	2.3	17	86	4	51	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62398679--62398756	37	2.0	40	90	9	126	34	2	0	62	1.09
62398715--62398775	26	2.3	26	88	0	86	36	1	1	60	1.16
62399772--62399877	25	4.3	25	75	4	108	34	20	25	18	1.96
62399772--62399878	50	2.2	49	86	1	142	34	20	25	19	1.96
62401014--62401038	6	4.2	6	100	0	50	84	0	0	16	0.63
62427447--62427494	25	1.9	25	87	8	71	72	6	12	8	1.26
62427448--62427506	25	2.3	26	82	8	68	74	3	13	8	1.17
62427581--62427614	17	1.9	17	88	5	50	44	14	11	29	1.81
62435752--62435831	31	2.7	29	82	5	88	32	1	10	56	1.41
62435773--62435831	29	2.0	29	83	3	73	30	1	11	55	1.46
62437527--62437562	13	2.8	13	91	0	63	36	8	16	38	1.79
62440246--62440426	41	4.4	41	90	2	256	23	27	20	28	1.99
62443016--62443206	72	2.6	72	82	4	213	57	12	4	25	1.55
62444573--62444604	15	2.2	14	94	5	55	53	12	28	6	1.62
62449107--62449141	17	2.0	18	88	5	54	48	0	2	48	1.16
62449937--62450005	17	4.0	18	74	9	63	52	7	2	37	1.44
62461856--62461924	29	2.4	30	79	13	74	62	2	4	30	1.29
62467873--62467914	21	2.0	21	90	0	66	47	0	19	33	1.49
62471529--62471595	34	1.9	35	84	3	91	34	5	10	49	1.62
62473743--62473772	14	2.1	14	93	0	51	40	0	3	56	1.16
62474989--62475031	21	2.0	21	95	0	77	27	0	37	34	1.57
62475012--62475044	16	2.1	16	94	0	57	33	0	36	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62475023--62475117	45	2.1	44	88	1	136	34	5	27	32	1.79
62475279--62475313	18	2.0	17	88	5	52	54	0	0	45	0.99
62475237--62475309	27	2.7	27	76	8	76	52	2	0	45	1.15
62475198--62475469	144	1.9	147	94	3	487	46	3	2	47	1.34
62475423--62475457	18	2.0	17	88	5	52	54	0	0	45	0.99
62475443--62475621	55	3.1	54	64	22	128	49	7	2	41	1.43
62475438--62475625	61	3.1	61	68	14	190	49	6	2	41	1.41
62475406--62475628	120	1.9	120	97	0	419	49	6	2	42	1.40
62475543--62475577	18	2.0	17	88	5	52	60	0	0	40	0.97
62475618--62475664	17	2.9	16	78	18	53	46	2	6	44	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216