genome.fa.s15.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  157  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49384843--49385003	54	3.0	53	76	3	142	27	19	16	37	1.92
49386648--49386925	125	2.2	124	89	0	412	33	23	14	28	1.94
49387456--49387534	41	1.9	41	100	0	158	44	17	25	12	1.84
49396694--49396733	21	1.9	21	85	10	55	17	10	2	70	1.27
49398467--49398582	52	2.3	49	80	11	128	55	1	3	39	1.27
49398494--49398547	20	2.6	21	77	22	60	53	1	3	40	1.29
49404398--49404432	15	2.3	15	95	0	61	51	14	17	17	1.77
49411235--49411272	18	2.1	18	85	9	51	52	5	26	15	1.64
49415152--49415176	3	8.3	3	100	0	50	32	0	68	0	0.90
49416936--49416961	5	5.2	5	100	0	52	57	0	0	42	0.98
49422121--49422641	172	3.0	172	98	0	997	40	12	12	34	1.80
49422606--49423445	417	2.0	418	84	3	1095	38	19	12	30	1.88
49426970--49427022	25	2.1	25	83	13	65	54	3	1	39	1.29
49427393--49427431	14	2.6	15	84	12	53	10	0	33	56	1.33
49427426--49427492	21	3.2	21	60	0	53	29	0	22	47	1.51
49427538--49427654	34	3.5	33	85	3	117	40	0	11	48	1.39
49427711--49428043	125	2.7	126	88	2	474	37	15	17	28	1.91
49429222--49429265	21	2.1	21	91	0	70	2	15	52	29	1.55
49439888--49439913	3	8.7	3	100	0	52	69	0	30	0	0.89
49442711--49442771	29	2.1	29	100	0	122	44	21	6	27	1.77
49448362--49448387	12	2.2	12	100	0	52	7	15	30	46	1.74
49448455--49448623	73	2.3	72	84	2	203	25	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49448619--49449051	146	3.0	146	97	0	812	43	14	17	25	1.86
49448935--49449158	107	2.1	108	97	0	423	45	14	14	25	1.82
49448796--49449304	254	2.0	253	98	0	982	45	14	15	25	1.83
49449043--49449475	146	3.0	145	90	4	677	43	14	17	24	1.86
49449211--49449475	139	1.9	139	93	3	455	44	13	17	24	1.84
49448643--49449447	400	2.0	394	94	3	1343	44	13	16	25	1.85
49449204--49449512	139	2.3	136	84	3	451	46	13	16	23	1.82
49450079--49450111	14	2.3	15	94	5	59	30	0	33	36	1.58
49450134--49450173	14	2.9	14	92	0	62	22	0	42	35	1.54
49450146--49450184	12	3.1	12	88	7	51	20	0	48	30	1.50
49450478--49450525	7	6.7	7	80	4	60	20	0	47	31	1.50
49450492--49450536	22	2.0	22	86	0	63	26	2	37	33	1.69
49450869--49450967	47	2.1	48	94	1	173	45	7	0	47	1.30
49453801--49453839	18	2.2	18	86	4	53	46	2	17	33	1.62
49455693--49455944	43	5.9	43	91	0	360	23	16	26	33	1.95
49458384--49458411	1	28.0	1	100	0	56	100	0	0	0	0.00
49461782--49461864	41	2.0	41	97	0	157	43	8	4	43	1.56
49464778--49465055	143	1.9	144	84	0	369	32	16	24	26	1.96
49489328--49489444	43	2.7	43	80	2	110	37	17	18	26	1.93
49491875--49491908	11	3.1	11	91	0	59	14	20	0	64	1.28
49494991--49495124	67	2.0	67	94	0	232	10	14	23	51	1.73
49498738--49498843	25	4.2	25	73	7	81	18	24	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49503888--49503925	15	2.4	17	86	8	53	47	0	10	42	1.38
49505384--49505422	18	2.2	18	85	0	51	15	33	33	17	1.92
49509474--49509524	26	2.0	26	96	0	93	11	23	35	29	1.90
49509396--49509617	103	2.2	103	93	1	374	18	18	31	31	1.95
49509537--49509686	70	2.1	71	92	1	248	23	16	30	30	1.96
49509647--49509698	26	2.0	26	92	0	86	15	21	34	28	1.94
49513593--49513672	29	2.8	29	78	14	101	50	8	21	20	1.75
49520558--49520734	88	2.0	88	98	0	345	26	18	12	42	1.86
49522836--49522883	24	2.1	22	84	7	60	31	10	25	33	1.89
49524021--49524059	20	1.9	21	84	5	53	35	7	2	53	1.43
49531219--49531402	42	4.4	42	93	0	307	27	22	20	29	1.99
49542107--49542168	3	21.3	3	77	12	67	33	1	1	62	1.14
49542125--49542165	8	5.1	8	88	11	66	36	2	0	60	1.10
49542107--49542169	17	3.8	17	83	8	78	34	1	1	61	1.15
49542307--49542382	30	2.7	28	80	9	82	36	6	2	53	1.41
49542347--49542390	22	2.0	23	86	4	63	38	2	4	54	1.33
49542333--49542401	32	2.2	30	84	7	84	37	8	2	50	1.48
49550078--49550117	19	2.2	18	86	4	53	77	0	22	0	0.77
49550073--49550115	22	2.0	22	86	9	61	76	0	20	2	0.89
49550078--49550123	16	2.9	16	78	15	51	71	0	28	0	0.86
49551281--49551441	88	1.8	88	89	2	252	27	22	23	26	2.00
49551647--49551929	50	5.7	49	68	3	172	29	19	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49551799--49551941	49	2.9	49	72	2	133	29	20	22	27	1.99
49551655--49551941	99	2.9	99	86	2	396	28	20	23	26	1.99
49553416--49553454	3	13.0	3	84	10	53	35	2	0	61	1.10
49553415--49553454	14	2.9	14	82	17	57	37	2	0	60	1.11
49553522--49553580	2	32.0	2	80	16	74	45	1	0	52	1.10
49553528--49553595	18	3.5	19	81	14	77	44	0	0	55	0.99
49553577--49553628	27	1.9	27	88	0	77	34	7	0	57	1.27
49553528--49553643	9	12.6	9	74	13	67	38	4	0	56	1.19
49556756--49556808	13	4.1	13	80	0	70	35	28	5	30	1.80
49558458--49558525	32	2.2	31	81	7	75	39	8	7	44	1.64
49560468--49560591	43	2.9	43	90	0	194	25	21	20	33	1.97
49560658--49560691	14	2.4	14	95	0	59	58	20	8	11	1.59
49560915--49560985	21	3.4	21	86	0	97	2	46	18	32	1.63
49566439--49566776	51	6.6	51	91	7	512	33	0	19	46	1.53
49566464--49566769	95	3.1	95	89	8	477	33	0	19	46	1.53
49566930--49567152	73	3.1	73	100	0	446	41	6	1	50	1.37
49566932--49567119	34	5.1	38	66	21	148	42	5	1	50	1.33
49566961--49567146	35	5.1	35	66	16	128	39	7	1	51	1.40
49566962--49567151	38	5.2	38	66	16	148	38	7	1	52	1.39
49567364--49567405	13	3.2	13	86	0	57	47	2	9	40	1.49
49567410--49567606	17	10.6	17	72	22	139	41	1	11	45	1.50
49567355--49567549	57	3.5	57	91	3	310	43	2	11	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49567429--49567615	96	1.9	96	98	0	365	42	1	10	45	1.48
49567484--49567589	39	2.7	40	95	2	196	43	1	10	44	1.49
49569735--49570177	84	5.2	84	92	3	724	28	19	19	31	1.97
49569735--49570173	172	2.6	172	94	1	760	29	19	19	31	1.97
49572696--49572951	113	2.3	112	90	0	386	26	26	18	28	1.98
49572898--49573031	40	3.3	40	90	1	196	20	30	16	32	1.95
49573299--49573335	18	2.1	18	90	10	58	62	5	0	32	1.18
49574808--49575185	44	8.6	44	74	7	178	28	24	18	28	1.98
49574791--49575333	218	2.5	217	89	0	800	28	24	18	28	1.98
49575302--49575945	128	5.0	128	91	1	1040	25	25	18	30	1.98
49575326--49575945	257	2.4	256	93	1	1028	25	25	18	30	1.98
49577326--49577367	7	5.7	7	86	8	57	14	9	0	76	1.02
49577326--49577368	15	2.9	15	86	6	61	13	9	0	76	1.01
49577325--49577368	22	2.0	23	95	4	81	13	9	0	77	0.99
49580283--49580333	25	2.0	25	100	0	102	23	23	21	31	1.98
49584513--49584735	90	2.5	90	81	0	266	49	12	16	21	1.78
49589885--49589982	49	2.0	49	91	0	160	40	14	10	34	1.79
49593120--49593526	124	3.3	124	90	1	609	33	17	19	29	1.95
49596115--49596150	14	2.6	14	95	0	63	36	16	25	22	1.94
49597097--49597139	18	2.4	18	92	0	68	44	6	27	20	1.77
49598941--49598965	11	2.3	11	100	0	50	48	8	28	16	1.74
49598976--49599038	11	5.7	12	78	17	66	42	1	31	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49598978--49599038	22	2.8	22	85	9	81	42	1	32	22	1.64
49598976--49599038	33	1.9	33	87	12	94	42	1	31	23	1.64
49598997--49599050	22	2.4	22	84	3	63	48	1	27	22	1.61
49599722--49599798	30	2.6	29	78	10	75	49	3	1	45	1.28
49602667--49602711	22	2.0	23	86	4	65	40	0	4	55	1.20
49617840--49617869	13	2.3	13	94	0	51	43	3	0	53	1.17
49620057--49620109	23	2.2	24	86	3	72	35	3	7	52	1.48
49645574--49645644	24	3.0	24	93	0	115	38	16	5	39	1.73
49645791--49645854	30	2.1	30	85	5	83	37	20	26	15	1.92
49651415--49651551	17	7.5	17	65	13	67	33	3	13	49	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216