genome.fa.s15.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  112  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35642680--35642852	44	3.9	44	79	4	197	31	12	25	30	1.92
35642919--35643037	44	2.7	43	77	8	107	28	19	22	29	1.98
35645148--35645192	17	2.6	18	82	6	58	15	6	6	71	1.29
35645213--35645243	15	2.1	15	93	0	53	16	0	16	67	1.23
35651307--35651367	20	2.9	20	73	17	61	67	1	0	31	1.01
35651491--35651528	20	2.0	20	89	5	60	28	0	2	68	1.03
35651829--35652001	40	4.3	40	91	0	256	31	15	31	21	1.94
35651949--35652429	112	4.3	112	94	0	827	27	18	27	25	1.98
35654346--35654539	84	2.2	87	91	4	313	30	19	19	30	1.96
35656605--35657018	40	9.5	40	79	16	432	42	9	2	44	1.52
35656645--35656945	57	5.2	57	78	15	346	44	10	2	42	1.51
35656579--35656808	97	2.4	97	95	0	406	44	10	2	43	1.49
35656605--35657018	177	2.3	177	97	0	783	42	9	2	44	1.52
35656645--35656945	97	3.1	96	81	13	288	44	10	2	42	1.51
35656782--35656985	97	2.1	97	96	0	372	44	10	2	43	1.51
35656990--35657031	13	3.2	13	86	0	57	40	9	2	47	1.49
35656579--35657033	137	3.3	136	80	10	552	42	10	2	44	1.52
35657463--35657846	7	45.0	9	63	33	83	46	20	0	33	1.53
35657478--35657838	51	6.9	50	90	5	515	46	19	0	33	1.53
35657570--35657667	32	3.2	32	91	8	154	45	21	0	32	1.52
35657478--35657838	134	2.8	134	92	5	586	46	19	0	33	1.53
35660397--35660432	17	2.1	17	89	5	54	19	2	11	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35660972--35660997	11	2.4	11	100	0	52	7	7	0	84	0.77
35662205--35662244	18	2.2	18	100	0	80	30	5	15	50	1.65
35664398--35664447	25	2.0	24	85	11	66	18	18	16	48	1.82
35672033--35672196	58	2.8	57	81	12	176	43	1	2	52	1.25
35685825--35685859	15	2.3	15	100	0	70	40	11	0	48	1.39
35691643--35691758	54	2.1	54	87	0	160	27	25	25	20	1.99
35691614--35691801	54	3.5	54	78	4	157	27	22	27	22	1.99
35696763--35696921	43	3.7	43	78	8	162	22	19	29	28	1.98
35703469--35703513	21	2.1	22	83	4	56	57	0	4	37	1.19
35704247--35704288	21	2.0	21	90	0	66	19	14	38	28	1.90
35705438--35705620	101	1.8	101	89	5	289	22	16	27	33	1.95
35705433--35705616	51	3.6	49	81	10	176	23	17	26	32	1.96
35705622--35705714	45	2.1	45	89	0	141	26	20	21	31	1.98
35707316--35707409	47	2.0	47	97	0	179	28	10	18	42	1.83
35719372--35719556	40	4.7	40	82	5	205	26	27	23	23	2.00
35723809--35723852	16	2.8	16	86	10	56	38	9	0	52	1.33
35724327--35724400	38	1.9	39	91	2	123	40	9	9	40	1.70
35732429--35732519	38	2.4	39	84	3	130	32	9	10	46	1.72
35738801--35738840	6	6.7	6	100	0	80	0	15	15	70	1.18
35740460--35740508	25	2.0	25	87	0	71	16	51	0	32	1.45
35740563--35740608	19	2.4	19	92	0	74	32	34	0	32	1.58
35740626--35740679	26	2.0	26	85	10	72	18	27	1	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35740679--35740750	36	1.9	38	86	8	103	30	8	5	55	1.52
35750118--35750152	19	1.9	17	88	11	52	65	11	2	20	1.37
35750595--35750670	31	2.4	33	82	10	95	60	0	2	36	1.11
35750595--35750668	32	2.3	32	84	9	89	60	0	2	36	1.11
35750666--35750708	16	2.6	16	81	3	50	62	0	0	37	0.95
35751592--35751681	31	3.0	31	71	11	87	45	5	14	34	1.68
35752163--35752219	30	1.9	29	89	3	87	15	35	26	22	1.94
35755385--35755410	13	2.0	13	100	0	52	23	0	0	76	0.78
35755514--35755579	19	3.3	21	75	16	61	62	1	0	36	1.05
35755492--35755579	38	2.3	40	83	11	105	57	1	0	40	1.06
35763824--35763858	18	1.9	18	88	0	52	17	28	40	14	1.88
35766680--35766999	110	2.9	110	83	2	394	31	26	17	25	1.97
35767046--35767122	40	1.9	40	89	5	120	42	28	15	12	1.84
35767090--35767162	25	3.0	24	78	6	74	43	28	15	12	1.82
35767101--35767178	25	3.2	25	80	5	79	43	25	15	15	1.86
35773826--35773925	38	2.6	39	83	1	121	50	7	3	40	1.45
35777162--35777222	31	2.0	31	100	0	122	47	13	9	29	1.74
35777436--35777481	24	1.9	24	90	0	74	45	15	8	30	1.76
35792022--35792083	29	2.2	29	85	2	81	29	11	14	45	1.80
35792362--35792586	123	1.8	123	93	0	387	29	16	20	32	1.95
35795695--35795737	10	4.5	10	82	11	63	48	2	6	41	1.43
35795759--35795793	18	1.9	18	94	0	61	51	2	8	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35795845--35796220	29	14.2	29	74	17	276	26	0	27	45	1.56
35795884--35795924	17	2.4	17	91	4	64	29	0	24	46	1.53
35795884--35795963	18	4.9	18	69	20	68	26	1	25	47	1.60
35795855--35796349	47	10.1	47	75	19	453	26	0	27	45	1.57
35795948--35796302	29	10.7	34	76	19	214	26	0	27	45	1.58
35795854--35796378	58	10.0	54	72	20	333	26	0	27	45	1.57
35796092--35796133	18	2.3	18	95	0	75	28	0	23	47	1.52
35796197--35796314	18	7.0	18	64	18	74	27	0	26	45	1.59
35796215--35796378	29	5.8	29	74	23	154	26	0	27	45	1.58
35796355--35796403	18	2.7	18	93	0	80	26	2	22	48	1.61
35796399--35796462	25	2.5	26	84	2	94	37	10	1	50	1.47
35797556--35797580	7	3.6	7	100	0	50	60	12	0	28	1.32
35798667--35798705	11	3.6	11	82	3	53	64	0	0	35	0.94
35798740--35798790	22	2.3	22	87	12	86	39	0	31	29	1.57
35800893--35800930	17	2.2	17	100	0	76	26	28	5	39	1.78
35809295--35809327	17	1.9	17	93	0	57	42	9	27	21	1.83
35813468--35813498	11	2.8	11	90	0	53	6	12	0	80	0.89
35813468--35813502	16	2.2	16	90	10	54	5	11	0	82	0.82
35823967--35824008	20	2.1	20	86	0	57	47	0	7	45	1.30
35829043--35829073	15	2.1	15	93	0	53	29	9	19	41	1.83
35829390--35829679	50	5.7	50	82	3	314	21	28	22	27	1.99
35833099--35833129	15	2.1	15	100	0	62	29	6	19	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35833446--35833735	50	5.7	50	80	3	287	22	27	22	27	1.99
35838583--35838621	19	2.1	19	95	0	69	43	10	2	43	1.52
35843275--35844091	47	17.3	47	94	1	1402	29	29	8	32	1.87
35847960--35848311	40	8.8	40	91	1	544	26	28	20	23	1.99
35849713--35850533	47	17.3	47	92	2	1329	30	29	8	31	1.87
35849763--35849841	25	3.3	25	66	16	76	31	29	5	34	1.79
35849713--35850533	96	8.6	94	94	1	1329	30	29	8	31	1.87
35853654--35853757	52	2.0	52	98	0	199	35	11	25	26	1.90
35856469--35856589	61	2.0	61	90	0	188	20	26	31	21	1.98
35856751--35857079	123	2.7	123	93	0	552	32	16	20	31	1.94
35860193--35860217	10	2.5	10	100	0	50	48	0	8	44	1.32
35860279--35860320	18	2.3	18	95	0	75	28	0	23	47	1.52
35860297--35860803	29	16.8	29	77	13	456	27	0	26	45	1.54
35860266--35860868	47	12.2	47	72	20	389	28	0	26	45	1.54
35860372--35860453	41	2.0	42	90	2	130	29	0	23	47	1.52
35860444--35860493	8	6.4	8	88	4	75	16	0	34	50	1.45
35860383--35860540	18	8.4	18	74	18	110	27	0	24	48	1.52
35860597--35860624	6	4.7	6	100	0	56	14	0	50	35	1.43
35860568--35860701	41	3.1	41	73	16	135	26	0	29	44	1.54
35860616--35860651	18	2.0	18	100	0	72	27	0	22	50	1.50
35860780--35860893	18	6.7	18	82	13	161	27	0	23	49	1.51
35860516--35860850	87	4.0	85	77	14	279	28	0	26	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35860889--35860952	25	2.5	26	87	2	103	37	12	1	48	1.51
35861361--35861395	18	1.9	18	88	0	52	31	8	34	25	1.86
35863150--35863212	28	2.2	30	91	5	103	63	1	0	34	1.04
35863150--35863212	29	2.2	29	94	5	110	63	1	0	34	1.04
35863223--35863313	40	2.3	40	96	0	164	42	1	25	30	1.62
35863897--35863948	21	2.4	21	87	3	68	34	13	13	38	1.84
35863910--35863953	21	2.1	21	100	0	88	27	18	13	40	1.88
35864015--35864051	6	6.0	6	96	3	65	0	0	51	48	1.00
35865962--35865995	17	2.0	17	100	0	68	41	11	29	17	1.85
35870242--35870274	17	1.9	17	100	0	66	42	9	30	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216