genome.fa.s15.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  96  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29803335--29803445	44	2.5	44	80	2	125	28	16	22	32	1.95
29803949--29804043	50	1.9	50	84	4	129	27	25	20	27	1.99
29804112--29804245	43	3.1	43	70	6	126	26	27	18	26	1.98
29804073--29804245	88	2.0	88	88	2	258	26	27	20	26	1.99
29804108--29804225	45	2.7	44	71	6	105	27	28	16	27	1.97
29815886--29816110	40	5.7	40	87	5	262	24	26	22	26	2.00
29815886--29816057	79	2.2	80	87	7	244	25	26	21	26	1.99
29815886--29816110	119	1.9	120	81	9	282	24	26	22	26	2.00
29819444--29819487	21	2.1	21	83	8	54	79	2	4	13	0.98
29819714--29819786	33	2.4	31	86	9	96	63	1	4	31	1.22
29819714--29819762	14	3.3	15	80	8	64	65	2	2	30	1.15
29824763--29824795	16	2.0	17	88	5	50	81	3	15	0	0.80
29832593--29832684	42	2.2	42	90	0	139	29	6	14	50	1.67
29837108--29837176	26	2.7	26	88	0	102	24	26	28	20	1.99
29841442--29841471	14	2.1	14	93	0	51	16	23	13	46	1.82
29847686--29847878	51	3.8	51	75	8	178	23	16	27	32	1.96
29847697--29847886	102	1.9	99	90	3	265	23	16	27	31	1.96
29848081--29848153	37	1.9	38	86	2	103	41	2	23	32	1.69
29849510--29849554	22	2.0	23	83	12	58	44	0	11	44	1.39
29851317--29851424	29	3.7	29	76	8	121	39	12	26	21	1.88
29851315--29851446	58	2.3	59	88	6	198	38	13	25	22	1.91
29851344--29851446	29	3.5	29	70	10	77	37	14	24	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29860523--29860667	50	2.9	50	81	2	166	34	22	15	26	1.95
29861971--29862181	92	2.3	92	85	1	278	43	14	8	33	1.75
29862009--29862148	31	4.5	31	70	12	108	46	15	7	31	1.72
29866632--29866671	20	2.0	20	90	9	64	30	15	30	25	1.95
29870227--29870317	48	1.9	47	86	2	128	20	13	26	39	1.89
29877204--29877491	51	5.7	50	78	3	299	29	15	25	29	1.96
29877204--29877482	102	2.7	102	89	0	416	29	15	25	29	1.96
29882970--29883022	24	2.2	24	96	0	97	22	13	22	41	1.88
29892514--29892597	38	2.2	38	80	4	98	25	21	10	42	1.85
29892654--29892757	40	2.6	40	82	0	118	24	20	18	37	1.94
29892683--29892761	40	2.0	40	89	0	122	21	18	20	39	1.93
29892686--29892779	40	2.3	40	83	3	109	23	18	21	37	1.94
29895391--29895449	27	2.2	27	81	0	64	32	22	30	15	1.94
29898538--29898572	18	1.9	18	88	0	52	40	8	25	25	1.84
29906559--29906626	28	2.4	28	92	0	109	26	32	14	26	1.95
29907895--29907943	22	2.2	22	81	3	53	42	4	4	48	1.40
29907725--29907998	140	2.0	140	90	1	433	41	5	9	44	1.59
29910296--29910326	16	1.9	16	93	0	53	16	3	6	74	1.16
29912399--29912475	34	2.2	34	79	6	84	33	22	18	25	1.96
29912939--29913352	27	15.4	27	83	5	417	19	14	20	45	1.85
29912940--29913352	107	3.8	106	81	6	483	19	14	20	45	1.85
29912940--29913352	134	3.1	132	82	6	458	19	14	20	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29914040--29914086	24	1.9	25	86	4	69	27	34	0	38	1.57
29916827--29916884	28	2.1	28	96	0	107	48	12	17	22	1.80
29921015--29921082	34	2.0	34	97	0	127	27	29	19	23	1.98
29922838--29923352	42	12.3	42	85	0	663	21	18	23	37	1.94
29924142--29924406	141	1.9	141	93	1	460	43	4	8	44	1.53
29924314--29924370	22	2.6	22	78	10	62	38	5	3	52	1.41
29924763--29924804	21	2.0	21	90	0	66	23	4	0	71	1.05
29924771--29924806	10	3.5	10	85	7	54	19	2	0	77	0.88
29931529--29931572	20	2.2	19	84	8	52	70	6	9	13	1.33
29934309--29934361	25	2.0	27	82	13	67	24	7	15	52	1.68
29934309--29934364	27	2.1	27	81	15	64	25	7	16	51	1.69
29941878--29941935	26	2.2	27	81	6	66	31	1	1	65	1.13
29950367--29950473	55	1.9	55	94	0	187	27	6	23	42	1.78
29960674--29960735	29	2.1	29	82	11	74	19	8	16	56	1.64
29961980--29962145	27	6.2	27	74	10	126	19	17	21	41	1.90
29965957--29966013	24	2.4	24	85	5	71	31	22	19	26	1.98
29974430--29974478	22	2.2	22	85	7	64	14	6	55	24	1.62
29986823--29986908	43	2.0	43	84	8	113	50	2	20	26	1.61
29989390--29989631	27	9.3	27	83	8	232	40	21	20	16	1.91
29989390--29989631	54	4.6	54	79	10	259	40	21	20	16	1.91
29989453--29989592	73	1.9	73	83	2	183	40	24	19	16	1.91
29989418--29989615	100	2.0	100	82	2	245	40	23	19	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29989398--29989627	127	1.8	126	86	0	334	40	22	20	16	1.91
29989808--29989858	26	2.0	26	88	7	77	15	25	23	35	1.94
29996065--29996293	60	3.8	60	77	5	257	24	24	13	36	1.92
29996405--29996501	50	2.0	50	81	2	115	25	22	18	32	1.97
29997975--29998047	29	2.5	29	95	0	128	31	9	13	45	1.76
29999223--29999251	13	2.1	14	93	6	51	75	3	6	13	1.13
30001800--30001883	20	4.1	20	81	6	105	25	29	26	19	1.98
30004164--30004262	27	3.7	27	77	5	101	28	10	21	40	1.85
30006621--30006842	27	8.2	27	80	5	252	20	18	20	41	1.91
30006621--30006842	54	4.1	54	86	1	320	20	18	20	41	1.91
30006623--30006842	81	2.7	81	87	2	334	20	18	20	40	1.91
30011193--30011385	50	3.8	50	84	0	242	26	22	29	21	1.99
30015127--30015278	40	3.8	40	78	8	114	23	21	27	27	1.99
30015180--30015310	40	3.3	39	86	4	181	23	19	27	29	1.99
30015195--30015357	40	4.1	39	82	7	141	26	20	26	26	1.99
30022477--30022505	13	2.1	14	93	6	51	44	13	0	41	1.44
30026210--30026298	45	2.0	45	90	0	142	34	23	16	24	1.95
30027849--30027989	50	2.9	47	80	8	142	31	25	18	24	1.98
30031435--30031608	50	3.5	50	82	0	213	21	30	22	25	1.99
30041416--30041706	50	5.8	50	85	0	384	20	30	22	26	1.98
30046915--30047083	27	6.3	27	80	10	204	42	17	15	24	1.88
30047065--30047401	27	12.5	27	84	0	413	32	19	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30047472--30047551	24	3.4	24	89	1	108	23	6	22	47	1.74
30047616--30047680	27	2.4	27	83	14	82	20	24	23	32	1.98
30047634--30047686	27	2.0	27	81	7	63	22	26	20	30	1.98
30047668--30047732	26	2.5	26	87	0	94	16	21	26	35	1.95
30047736--30047913	32	5.6	32	83	4	207	24	21	17	36	1.95
30047736--30047912	64	2.8	64	87	1	257	24	21	18	36	1.95
30047734--30047926	96	2.0	95	87	1	278	23	20	18	37	1.94
30056707--30056954	50	4.8	51	82	5	268	27	20	28	22	1.99
30064286--30064322	18	2.0	19	94	5	67	48	2	0	48	1.15
30064292--30064334	18	2.3	18	88	4	59	55	0	2	41	1.12
30073802--30073861	30	2.0	30	90	6	95	35	8	10	46	1.67
30075522--30075991	235	2.0	235	93	0	805	29	18	13	39	1.88
30076061--30076102	11	3.7	11	81	6	57	76	4	2	16	1.07
30076061--30076103	12	3.7	12	84	3	61	76	4	2	16	1.05
30076072--30076108	13	2.8	13	87	0	56	72	2	2	21	1.09
30076144--30076182	14	2.8	14	84	0	51	69	2	12	15	1.30
30080582--30080642	25	2.4	25	81	10	72	39	3	0	57	1.15
30083356--30083386	14	2.2	14	100	0	62	35	6	0	58	1.24
30098285--30098418	40	3.4	39	73	7	126	33	17	23	26	1.96
30098313--30098438	40	3.2	40	76	6	121	39	18	19	23	1.92
30098472--30098590	41	2.9	41	89	0	193	21	17	33	27	1.96
30098675--30098729	25	2.2	26	78	9	62	61	7	9	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30099214--30099254	21	2.0	20	85	4	55	19	0	41	39	1.52
30099246--30099301	7	7.4	7	77	15	58	16	1	46	35	1.57
30099246--30099301	16	3.6	16	79	13	64	16	1	46	35	1.57
30098970--30099705	290	2.5	290	84	7	945	28	2	27	42	1.67
30099495--30099535	14	2.9	14	92	3	64	31	0	29	39	1.57
30099479--30099559	21	3.8	21	71	11	67	27	0	33	39	1.57
30099586--30099614	15	1.9	15	100	0	58	27	0	34	37	1.57
30099194--30099747	295	1.8	300	82	6	712	29	1	26	41	1.66
30100226--30100372	49	3.1	48	65	14	117	48	9	10	31	1.69
30100200--30100376	92	1.9	92	90	2	284	50	9	8	32	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216