genome.fa.s15.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  38  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10810562--10810620	24	2.5	24	80	0	64	20	54	8	16	1.68
10831377--10831422	25	1.9	24	82	8	58	58	2	0	39	1.10
10831539--10831582	17	2.6	17	85	3	63	47	0	11	40	1.39
10831511--10831614	33	3.3	33	69	22	80	51	1	11	34	1.49
10831502--10831614	60	1.9	59	83	7	147	52	1	11	34	1.48
10831685--10831718	12	2.8	12	90	0	50	61	5	2	29	1.34
10831700--10831759	21	2.9	20	74	16	59	65	6	1	26	1.27
10832058--10832132	21	3.7	21	91	5	118	40	14	9	36	1.78
10832318--10832410	28	3.0	30	86	10	127	47	8	16	27	1.75
10833339--10833409	21	3.1	23	72	10	65	11	21	8	59	1.58
10841013--10841070	29	2.0	29	100	0	116	37	17	20	24	1.93
10841631--10841727	46	2.0	49	86	9	139	32	6	11	49	1.63
10843085--10843130	16	2.9	15	90	6	65	36	0	0	63	0.95
10843321--10843352	16	1.9	17	93	6	57	37	0	0	62	0.95
10843334--10843381	14	3.6	14	70	30	50	37	0	0	62	0.95
10843340--10843382	12	3.4	12	77	22	52	39	0	0	60	0.97
10843264--10843730	120	4.0	120	91	3	758	41	1	4	52	1.31
10843939--10843992	16	3.4	16	86	0	81	27	29	1	40	1.67
10845565--10845616	24	2.2	24	89	0	77	55	9	1	32	1.43
10847535--10847586	24	2.2	24	89	0	77	55	9	1	32	1.43
10849385--10849444	24	2.5	24	77	2	57	58	6	3	31	1.40
10861247--10861531	42	6.8	41	85	3	286	25	21	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10861288--10861535	83	3.0	82	85	5	304	22	21	19	35	1.96
10861291--10861533	125	1.9	125	86	8	341	23	21	19	35	1.96
10861923--10861964	21	2.0	21	90	0	66	9	38	16	35	1.81
10867343--10867563	9	24.8	9	77	5	225	33	1	15	49	1.53
10867343--10867685	27	12.7	27	78	12	287	32	1	14	51	1.53
10867593--10867761	31	5.3	31	69	15	114	34	2	11	50	1.52
10867616--10867685	26	2.9	23	81	12	70	31	2	14	51	1.57
10867638--10867699	9	6.7	9	71	14	54	33	4	16	45	1.68
10867596--10867999	99	4.3	95	87	10	552	36	3	12	47	1.59
10867731--10867772	21	2.0	22	85	4	59	38	2	11	47	1.53
10867830--10867891	9	6.7	9	71	14	54	33	4	16	45	1.68
10867596--10867999	192	2.1	185	89	9	640	36	3	12	47	1.59
10867932--10868075	9	16.2	9	65	20	54	36	3	17	43	1.66
10867918--10867998	17	4.6	17	70	18	51	35	2	14	46	1.58
10867935--10868046	46	2.5	45	85	11	149	36	3	16	42	1.66
10868146--10868183	16	2.4	16	86	4	51	52	5	2	39	1.38
10869174--10869228	30	1.9	29	82	10	69	58	9	3	29	1.46
10869263--10869295	15	2.2	15	94	0	57	45	21	24	9	1.80
10871645--10871706	14	4.3	15	75	20	60	37	46	1	14	1.54
10871648--10871735	28	3.1	28	79	6	97	36	43	2	18	1.63
10871879--10871917	20	2.0	20	89	0	60	28	51	5	15	1.64
10871881--10871934	27	2.0	27	85	0	72	29	48	1	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10871886--10871934	13	3.7	13	78	5	53	30	46	2	20	1.62
10872609--10872910	114	2.6	113	78	5	286	31	22	17	28	1.96
10880840--10880877	19	2.0	19	85	10	51	73	7	7	10	1.24
10880822--10880876	25	2.2	25	80	6	67	72	9	9	9	1.28
10880866--10880910	14	3.0	15	80	9	56	75	0	17	6	1.01
10883074--10883193	44	2.7	44	79	2	134	24	20	30	24	1.99
10883220--10883687	44	10.7	43	72	10	272	26	16	27	29	1.97
10882978--10883689	218	3.2	218	85	4	953	26	17	27	28	1.98
10883342--10883675	174	1.9	174	81	8	403	25	18	27	28	1.98
10891788--10891876	25	3.1	30	81	15	116	24	25	7	41	1.82
10891798--10891844	15	3.1	15	70	11	51	27	23	8	40	1.83
10892426--10892514	35	2.5	35	83	0	106	25	7	12	53	1.65
10896070--10896107	18	2.1	18	90	0	58	42	39	2	15	1.61
10896131--10896185	12	4.3	12	82	11	56	72	9	0	18	1.10
10896149--10896178	6	5.0	6	100	0	60	66	16	0	16	1.25
10902065--10902112	23	2.1	23	100	0	96	39	8	27	25	1.84
10904998--10905167	91	1.9	90	88	3	261	25	8	22	42	1.81
10906178--10906334	43	3.7	43	77	10	160	24	17	26	31	1.97
10910861--10911021	10	16.7	10	68	18	58	59	4	3	32	1.35
10910822--10910921	9	11.0	9	72	19	75	61	2	4	33	1.26
10910884--10910920	16	2.2	16	90	9	56	64	2	0	32	1.07
10911408--10911467	20	3.0	20	76	13	61	30	3	3	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10911413--10911534	30	4.3	29	72	13	76	34	1	3	60	1.23
10911451--10911607	46	3.4	44	73	14	129	33	1	2	61	1.20
10911443--10911606	19	8.8	19	68	11	79	32	1	2	62	1.19
10915274--10915346	36	2.0	36	97	0	137	42	19	15	23	1.88
10917677--10918063	193	2.0	193	96	0	711	32	23	15	28	1.95
10922406--10922438	17	2.0	17	88	5	50	66	3	12	18	1.36
10922787--10922853	25	2.7	26	86	6	93	59	4	5	29	1.41
10922819--10922866	21	2.3	20	82	10	60	64	2	4	29	1.23
10922786--10922870	25	3.6	24	81	9	86	60	3	5	30	1.38
10923581--10923645	6	10.7	6	78	15	62	81	1	4	12	0.91
10924378--10924431	22	2.5	21	81	3	63	53	1	1	42	1.22
10924407--10924446	16	2.5	16	91	0	62	47	2	7	42	1.45
10924413--10924626	59	3.5	63	85	9	213	41	4	8	45	1.55
10924693--10924740	24	2.1	23	88	11	73	64	2	0	33	1.05
10927775--10927814	2	20.0	2	100	0	80	50	0	50	0	1.00
10931005--10931081	39	2.0	40	84	7	104	44	0	0	55	0.99
10932211--10932316	56	1.9	56	86	5	153	28	36	0	34	1.58
10933743--10933815	2	36.5	2	100	0	146	0	49	0	50	1.00
10938178--10938222	23	1.9	24	86	4	65	22	11	15	51	1.75
10942194--10942233	22	1.9	20	85	10	53	35	5	20	40	1.74
10943359--10943487	45	2.9	45	82	4	163	42	12	19	25	1.86
10949006--10949121	62	1.9	61	89	5	180	52	3	4	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10950566--10950636	30	2.4	30	86	6	92	26	18	11	43	1.83
10950761--10950792	15	2.1	15	94	0	55	65	6	6	21	1.38
10954048--10954119	36	2.0	36	97	0	135	29	19	12	38	1.88
10955353--10955391	3	12.7	3	83	5	51	33	5	0	61	1.18
10957936--10957988	25	2.1	25	100	0	106	22	18	15	43	1.87
10960458--10960520	22	2.9	23	79	9	69	47	9	23	19	1.78
10960639--10960673	17	2.0	18	88	5	54	40	28	5	25	1.78
10963995--10964077	33	2.5	32	84	7	96	25	31	24	19	1.98
10964742--10964768	14	1.9	14	100	0	54	74	3	0	22	0.98
10967230--10967277	19	2.5	18	74	12	51	12	4	8	75	1.18
10970946--10970978	14	2.3	15	89	5	50	24	0	3	72	0.98
10972609--10972647	6	6.5	6	87	0	60	15	0	5	79	0.90
10979532--10979562	13	2.3	14	94	5	55	70	16	0	12	1.16
10984350--10984374	13	1.9	13	100	0	50	40	20	8	32	1.81
10985486--10985533	10	4.8	10	77	7	53	58	2	2	37	1.22
10986225--10986278	5	11.4	5	84	9	69	0	16	0	83	0.65
10986225--10986278	18	2.9	18	89	8	74	0	16	0	83	0.65
10995004--10995030	14	1.9	14	100	0	54	22	14	29	33	1.94
10999969--11000217	50	4.8	50	85	4	284	20	29	24	26	1.99
10999968--11000217	100	2.4	104	88	6	357	20	29	24	26	1.99
11000312--11000343	13	2.5	13	94	0	55	56	12	0	31	1.37
11000555--11000612	30	1.9	30	89	0	89	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11006943--11007191	50	4.8	50	85	4	284	20	29	24	26	1.99
11006942--11007191	100	2.4	104	88	6	357	20	29	24	26	1.99
11007286--11007317	13	2.5	13	94	0	55	56	12	0	31	1.37
11007529--11007586	30	1.9	30	89	0	89	31	24	3	41	1.71
11009154--11009225	24	3.0	23	74	6	72	48	16	9	25	1.76
11013232--11013378	73	2.0	73	97	0	276	36	8	17	38	1.79
11014210--11014482	93	2.9	93	94	1	467	35	12	18	33	1.88
11014773--11014824	27	1.9	27	84	7	70	63	19	5	11	1.47
11020960--11020996	19	1.9	19	88	0	56	24	0	10	64	1.25
11027231--11027262	6	5.3	6	100	0	64	15	53	15	15	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216