genome.fa.s15.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  142  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44959251--44959291	19	2.2	18	86	4	55	68	0	2	29	1.03
44959251--44959329	28	2.8	26	80	16	88	62	2	2	32	1.22
44959232--44959360	9	14.0	9	68	20	54	62	2	2	33	1.21
44959228--44959319	17	5.2	18	71	10	73	61	1	2	34	1.15
44960005--44960064	24	2.5	24	81	10	68	33	1	3	61	1.22
44960463--44960497	17	2.1	17	100	0	70	37	22	5	34	1.78
44967013--44967056	22	2.0	22	95	0	79	38	0	20	40	1.53
44969134--44969190	27	2.1	27	83	6	71	56	1	0	42	1.10
44970767--44970820	21	2.5	22	77	17	60	33	3	1	61	1.25
44971123--44971169	18	2.6	17	78	18	51	38	4	0	57	1.18
44974506--44974530	9	2.8	9	100	0	50	32	12	36	20	1.89
44978247--44978472	44	5.1	44	65	14	124	23	22	28	25	1.99
44978188--44978853	88	7.6	88	89	1	1021	25	22	27	24	2.00
44978642--44978780	44	3.2	44	67	17	108	25	23	26	25	2.00
44980833--44980884	24	2.2	24	89	0	77	55	9	1	32	1.43
44983055--44983127	34	2.1	35	90	7	114	47	12	0	39	1.41
44983055--44983138	34	2.4	34	86	5	98	45	11	2	40	1.54
44984076--44984113	19	2.0	19	94	0	67	39	28	5	26	1.78
44986196--44986339	33	4.3	33	67	13	87	28	20	15	35	1.93
44986170--44986409	101	2.4	101	86	0	327	29	22	15	32	1.94
44988311--44988360	11	4.4	11	78	9	55	64	4	0	32	1.12
44988599--44988657	30	1.9	31	86	10	86	27	20	3	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44991210--44991251	5	8.4	5	80	19	52	40	0	16	42	1.48
44997092--44997120	14	2.0	15	93	6	51	48	0	41	10	1.37
44997664--44997706	10	4.1	10	85	11	50	58	4	0	37	1.19
45000551--45000610	25	2.4	25	77	20	72	61	0	1	36	1.06
45008062--45008332	50	5.3	50	80	8	262	25	20	30	22	1.98
45009874--45009924	23	2.2	23	89	0	75	43	21	7	27	1.80
45013423--45013854	225	1.9	225	96	0	801	36	16	26	20	1.93
45016273--45016341	26	2.6	26	86	2	84	33	2	4	59	1.32
45016267--45016352	26	3.3	24	79	9	73	33	3	3	59	1.31
45016346--45016397	24	2.1	25	82	10	63	34	5	3	55	1.42
45016399--45016459	25	2.5	25	76	12	72	21	0	6	72	1.07
45016865--45016893	15	1.9	15	100	0	58	55	10	0	34	1.34
45017458--45017501	19	2.4	18	81	11	54	15	13	11	59	1.62
45019733--45019769	18	2.0	18	89	5	56	78	0	18	2	0.87
45020616--45020783	44	3.6	48	75	16	140	27	17	26	27	1.98
45020656--45021641	44	21.4	45	65	14	171	31	18	20	29	1.96
45021355--45021535	94	1.9	95	79	4	204	35	16	20	27	1.94
45023063--45023289	26	8.7	26	69	17	114	29	3	4	63	1.29
45023207--45023298	25	3.7	25	77	7	89	21	2	4	71	1.14
45025569--45025616	23	2.1	23	100	0	96	25	4	27	43	1.72
45035700--45035728	14	2.0	15	93	6	51	48	0	41	10	1.37
45038784--45038825	20	2.1	20	95	0	75	59	16	4	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45055713--45055761	25	2.0	24	88	4	71	14	18	26	40	1.89
45057106--45057155	24	2.1	24	88	0	73	40	18	16	26	1.90
45057113--45057425	36	8.7	36	84	0	365	39	15	13	31	1.87
45057114--45057426	108	2.9	108	86	0	419	39	15	13	31	1.87
45057532--45057588	24	2.4	24	96	0	105	28	14	29	28	1.95
45058874--45058921	9	5.1	10	76	20	50	35	0	2	62	1.07
45058864--45059035	27	6.2	28	72	19	87	31	1	2	65	1.13
45058877--45059024	29	5.0	29	73	16	108	33	0	2	63	1.13
45058910--45058972	30	2.1	31	82	8	76	25	0	3	71	1.01
45058850--45058994	29	5.1	27	70	18	73	31	2	2	64	1.19
45058986--45059042	26	2.2	27	81	6	64	40	0	1	57	1.09
45058992--45059058	27	2.4	27	77	20	68	38	1	1	58	1.17
45071372--45071421	25	2.0	25	100	0	100	36	8	16	40	1.77
45091586--45091610	13	1.9	13	100	0	50	80	0	0	20	0.72
45092709--45092819	37	3.0	37	68	7	118	49	5	7	37	1.53
45092669--45092818	73	2.1	73	100	0	300	48	5	6	39	1.52
45092674--45092793	37	3.3	37	71	8	129	46	5	5	42	1.49
45092709--45092822	33	3.2	33	67	23	97	49	5	7	38	1.53
45098598--45098739	29	4.8	29	78	8	128	38	14	25	21	1.92
45098606--45098856	30	8.5	30	76	7	199	36	12	26	24	1.91
45109220--45109316	25	3.9	25	78	8	99	36	25	16	21	1.94
45111967--45112183	25	8.7	25	80	2	175	19	28	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45111974--45112183	75	2.8	75	79	5	201	20	27	20	32	1.97
45112122--45112202	25	3.2	25	76	13	78	22	25	20	30	1.98
45116666--45116704	20	2.0	20	90	5	62	58	0	2	38	1.12
45116694--45116737	21	2.0	24	86	13	67	52	4	2	40	1.34
45117047--45117113	34	2.0	34	88	2	100	40	7	1	50	1.39
45120944--45120970	6	4.5	6	100	0	54	14	33	33	18	1.92
45122057--45122150	47	2.0	47	97	0	179	46	7	10	35	1.67
45123021--45123069	16	3.1	15	77	11	53	79	0	14	6	0.91
45130756--45130878	34	3.6	34	84	0	129	29	6	17	46	1.73
45132718--45132757	18	2.2	19	91	8	66	32	0	2	65	1.06
45135841--45135891	17	3.0	17	80	5	50	54	3	5	35	1.43
45140696--45140765	30	2.4	29	81	6	90	44	10	0	45	1.37
45142087--45142185	49	2.0	49	100	0	198	15	14	12	58	1.63
45143121--45143174	24	2.2	25	83	3	65	25	20	7	46	1.77
45145882--45145930	11	4.5	11	82	14	57	83	0	12	4	0.77
45145882--45145957	23	3.4	21	82	10	64	82	1	10	5	0.87
45145883--45145957	21	3.4	21	83	9	78	82	1	10	5	0.88
45145882--45145957	39	2.0	38	82	7	91	82	1	10	5	0.87
45145907--45145956	7	6.9	7	80	17	57	84	2	6	8	0.86
45146403--45146450	6	8.0	6	82	13	55	79	2	18	0	0.84
45147620--45147941	45	7.2	45	84	6	420	27	16	25	30	1.97
45147634--45147941	90	3.4	90	91	0	501	27	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45147620--45147941	135	2.4	135	88	2	475	27	16	25	30	1.97
45148115--45148412	50	6.0	50	72	6	235	35	21	17	26	1.95
45148111--45148397	100	2.9	99	85	2	403	35	21	17	25	1.95
45148531--45148638	44	2.4	45	85	1	137	27	21	25	25	1.99
45150427--45150498	28	2.5	29	86	2	92	41	11	0	47	1.39
45156806--45156849	9	4.8	9	81	15	54	75	0	25	0	0.81
45156806--45156848	15	3.0	15	83	13	63	76	0	23	0	0.78
45157948--45157989	19	2.3	18	83	4	57	57	0	21	21	1.41
45159806--45159833	14	2.0	14	100	0	56	50	7	14	28	1.69
45160384--45160674	21	14.0	21	69	7	155	16	20	16	46	1.84
45160393--45160655	42	6.3	42	80	5	255	16	19	16	47	1.83
45160394--45160657	84	3.1	83	81	3	314	16	20	16	46	1.83
45162910--45162979	35	2.0	35	91	0	113	32	25	7	34	1.83
45167485--45167555	35	2.0	35	88	0	106	30	23	9	35	1.88
45176368--45176404	16	2.2	17	86	13	51	78	18	0	2	0.87
45180148--45180236	38	2.3	38	90	0	133	35	31	20	12	1.89
45180119--45180216	22	4.7	22	73	14	100	35	31	18	14	1.91
45181969--45182003	18	1.9	18	94	0	61	34	8	40	17	1.80
45185253--45185302	24	2.1	24	84	0	64	10	36	10	44	1.72
45188702--45188750	16	2.9	16	77	14	53	61	2	0	36	1.08
45188717--45188765	19	2.5	19	81	12	64	61	0	0	38	0.96
45188780--45188817	19	2.0	19	89	0	58	55	2	2	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45188950--45189142	9	20.2	9	64	24	51	31	4	2	62	1.26
45188955--45189126	10	17.5	10	65	19	60	30	4	2	63	1.25
45189107--45189163	18	3.1	18	73	12	53	42	0	0	57	0.98
45189108--45189160	26	2.0	28	85	7	74	43	0	0	56	0.99
45189107--45189198	36	2.6	36	74	10	89	35	1	1	61	1.10
45189345--45189385	19	2.2	19	86	0	55	31	0	4	63	1.15
45199095--45199154	29	2.1	29	87	9	88	66	1	0	31	1.01
45203876--45203922	20	2.3	20	89	7	69	51	4	19	25	1.65
45203886--45203925	20	2.0	20	100	0	80	45	5	20	30	1.72
45204505--45204617	31	3.8	31	70	17	78	65	5	0	29	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216