genome.fa.s15.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  97  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30100428--30100617	98	1.9	97	86	3	265	47	8	9	34	1.67
30102239--30102288	24	2.1	24	100	0	100	30	4	16	50	1.63
30104538--30104846	43	7.3	43	82	3	347	24	18	28	28	1.98
30104538--30104863	85	3.8	84	80	5	341	25	19	27	27	1.98
30115531--30115593	3	20.7	3	80	3	54	53	1	6	38	1.36
30116027--30116413	42	9.2	42	85	1	472	36	22	18	22	1.95
30116027--30116413	167	2.3	167	85	2	508	36	22	18	22	1.95
30116821--30116846	10	2.6	10	100	0	52	0	0	15	84	0.62
30122219--30122317	28	3.5	28	91	1	144	26	13	28	32	1.93
30122219--30122332	57	2.0	57	81	6	133	28	12	25	33	1.92
30125469--30125808	51	6.7	50	78	5	333	29	25	15	29	1.96
30125465--30125808	102	3.4	102	86	2	469	29	25	15	29	1.96
30143738--30143770	16	1.9	17	88	11	50	15	27	36	21	1.93
30143957--30144023	26	2.5	26	87	2	89	29	17	26	25	1.98
30152954--30152978	5	5.0	5	100	0	50	20	0	0	80	0.72
30163578--30163929	182	1.9	183	95	0	634	28	4	34	32	1.77
30164863--30164904	22	2.0	21	86	9	59	9	21	40	28	1.84
30164981--30165097	27	4.3	28	78	10	136	40	21	17	21	1.92
30165257--30165358	26	3.9	26	77	0	87	19	19	23	37	1.94
30165316--30165366	26	2.0	26	88	0	75	21	21	19	37	1.95
30170425--30170468	23	1.9	23	90	0	70	43	25	4	27	1.74
30190600--30190650	23	2.2	23	89	0	75	27	7	21	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30191863--30191977	53	2.2	53	83	0	149	27	22	32	17	1.96
30196165--30196190	8	3.2	8	100	0	52	34	0	0	65	0.93
30204011--30204064	23	2.3	24	75	9	58	40	11	0	48	1.39
30204296--30204320	11	2.3	11	100	0	50	72	0	0	28	0.86
30215298--30215342	22	2.0	22	87	8	65	33	0	17	48	1.48
30218333--30218530	98	2.0	100	94	2	346	48	8	11	31	1.70
30222317--30222367	20	2.5	20	84	6	59	7	37	25	29	1.84
30223807--30223854	16	3.0	16	81	0	60	37	25	22	14	1.92
30226350--30226392	20	2.1	21	86	4	61	18	23	11	46	1.82
30230927--30231250	107	3.0	108	85	1	445	38	16	16	28	1.90
30235889--30235928	18	2.2	18	86	0	53	10	25	2	62	1.39
30257777--30258478	44	15.6	44	71	11	332	29	20	17	31	1.96
30257943--30258351	92	4.5	95	73	11	318	30	20	16	32	1.95
30257943--30258387	181	2.4	181	86	2	599	30	20	16	32	1.95
30258090--30258375	89	3.2	89	71	12	285	30	23	15	30	1.95
30264437--30264495	27	2.2	27	78	6	66	66	6	6	20	1.39
30264449--30264865	26	16.1	26	72	14	251	62	5	4	28	1.35
30264581--30264758	82	2.2	81	80	7	198	63	4	3	28	1.32
30264618--30264847	55	4.4	53	76	12	158	63	3	3	28	1.28
30264599--30264865	82	3.4	79	76	12	241	64	4	2	28	1.28
30264656--30264795	14	9.9	14	66	20	60	63	2	2	32	1.18
30264581--30264831	50	4.9	49	76	14	199	63	4	3	29	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30264628--30264855	27	8.8	26	72	18	67	64	3	3	28	1.25
30264820--30264865	23	1.9	25	86	8	69	71	4	2	21	1.14
30277777--30277851	27	2.8	27	88	6	100	42	17	17	22	1.89
30277842--30278123	27	10.4	27	90	1	354	32	17	23	26	1.97
30277815--30278152	81	4.2	82	79	7	334	31	17	23	26	1.97
30278142--30278239	24	4.1	24	80	2	99	29	8	16	45	1.76
30278142--30278251	48	2.3	48	82	3	123	29	8	17	45	1.77
30278315--30278379	27	2.4	27	85	12	82	20	21	24	33	1.97
30278426--30278593	32	5.3	32	83	0	212	22	19	19	38	1.93
30278422--30278592	64	2.7	64	87	0	254	22	19	18	38	1.93
30278595--30278654	22	2.7	22	76	0	57	20	23	16	40	1.91
30290693--30290717	11	2.3	11	100	0	50	40	24	0	36	1.55
30300157--30300206	26	1.9	25	84	8	64	36	18	8	38	1.80
30306473--30306567	41	2.3	41	100	0	190	27	21	28	23	1.99
30306737--30306912	41	4.3	41	90	0	280	29	18	27	24	1.98
30309375--30309473	23	4.3	23	92	0	153	31	25	20	23	1.98
30316320--30316413	23	4.1	23	94	0	152	35	25	19	20	1.96
30323955--30324147	50	3.8	50	88	3	273	25	21	31	21	1.98
30334806--30334858	25	2.1	25	85	0	70	43	11	22	22	1.85
30338314--30338397	36	2.3	36	87	4	116	16	10	30	41	1.83
30343959--30343998	20	2.0	20	90	0	62	35	10	5	50	1.58
30343945--30344010	35	1.9	33	87	6	96	36	7	9	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30348945--30348990	23	2.0	23	100	0	92	43	8	17	30	1.79
30355333--30355395	30	2.1	30	84	0	81	58	14	3	23	1.50
30355426--30355455	14	2.1	14	93	0	51	53	13	13	20	1.72
30358881--30359026	42	3.5	42	80	1	177	20	14	22	42	1.88
30360938--30361033	23	4.2	23	91	0	156	33	23	20	21	1.97
30368335--30368433	23	4.3	23	93	0	162	33	25	20	21	1.97
30370616--30370738	25	4.9	25	79	9	117	30	21	24	22	1.99
30370590--30370738	50	3.0	50	86	2	174	30	20	24	24	1.99
30370591--30370739	75	2.0	74	82	10	178	30	20	24	25	1.99
30371966--30372070	43	2.5	42	78	12	106	21	21	22	33	1.97
30372856--30372907	25	2.1	25	100	0	104	36	19	19	25	1.95
30378284--30378398	56	2.1	56	100	0	230	38	17	10	33	1.84
30380594--30380685	27	3.4	26	90	3	130	42	21	11	23	1.86
30383955--30384027	29	2.5	29	93	0	119	45	15	9	30	1.78
30394606--30394707	48	2.1	48	87	1	143	51	4	2	40	1.38
30395104--30395154	24	2.1	25	85	3	68	37	5	1	54	1.36
30396566--30396598	4	8.5	4	86	6	50	45	0	0	54	0.99
30398654--30398685	15	2.1	15	94	0	55	68	9	6	15	1.36
30398819--30398879	27	2.3	27	80	8	63	54	9	4	31	1.55
30400372--30400554	50	3.5	50	77	8	165	23	28	20	27	1.99
30404874--30404912	20	2.0	20	90	5	62	30	28	7	33	1.85
30408269--30408339	27	2.7	27	80	8	85	38	19	22	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30408424--30408489	25	2.7	24	72	4	60	39	15	27	18	1.90
30408513--30408546	17	2.0	17	88	0	50	44	26	20	8	1.81
30413167--30413195	13	2.1	14	93	6	51	27	20	20	31	1.98
30413667--30413697	9	3.4	9	90	0	53	25	12	22	38	1.90
30413985--30414027	20	2.2	20	100	0	86	23	23	0	53	1.46
30415208--30415264	5	11.4	5	90	0	87	19	0	57	22	1.40
30415320--30415344	4	6.2	4	100	0	50	0	24	52	24	1.48
30415354--30415414	2	30.5	2	100	0	122	49	0	50	0	1.00
30417777--30417803	14	1.9	14	100	0	54	55	0	7	37	1.28
30418245--30418273	2	14.5	2	100	0	58	0	51	0	48	1.00
30422273--30422313	20	2.0	20	100	0	82	36	0	0	63	0.95
30422523--30422561	15	2.3	18	75	25	57	15	30	5	48	1.66
30422529--30422557	15	1.9	15	100	0	58	20	20	6	51	1.70
30432138--30432209	27	2.7	27	82	0	90	13	20	23	41	1.88
30432137--30432235	27	3.7	27	78	5	85	16	21	22	40	1.91
30435181--30435219	21	1.9	21	89	5	62	74	5	10	10	1.21
30436637--30436729	24	3.9	24	89	0	141	31	25	20	22	1.98
30441404--30441479	24	3.2	24	84	0	98	34	18	19	27	1.95
30441767--30441826	28	2.1	28	82	11	70	45	20	5	30	1.72
30449664--30450198	138	3.8	139	79	10	627	45	5	9	40	1.59
30449836--30450198	148	2.5	150	79	11	393	47	5	9	38	1.58
30459065--30459130	25	2.6	25	87	0	96	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30459380--30459455	37	2.1	37	100	0	152	27	13	25	34	1.93
30466855--30466880	3	8.7	3	100	0	52	34	30	0	34	1.58
30466879--30466905	3	9.0	3	100	0	54	33	0	0	66	0.92
30470638--30470702	20	3.2	20	63	16	53	23	35	13	27	1.93
30470637--30470912	40	6.9	40	83	1	295	23	28	14	34	1.93
30470718--30470783	20	3.3	20	64	8	53	19	31	16	31	1.94
30470639--30470911	119	2.3	120	85	6	358	23	28	14	34	1.93
30504278--30504339	23	2.7	23	87	0	88	37	27	6	29	1.82
30511325--30511359	18	1.9	18	88	0	52	17	11	8	62	1.52
30513325--30513357	5	6.6	5	92	0	57	78	0	3	18	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216