genome.fa.s15.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  188  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58628077--58628125	21	2.3	21	96	0	89	26	34	4	34	1.76
58634331--58634375	18	2.6	18	89	3	65	17	33	24	24	1.96
58636614--58636671	6	10.0	6	73	12	50	50	0	0	50	1.00
58636620--58636704	35	2.4	34	84	7	100	48	1	1	49	1.16
58638936--58638992	28	2.0	28	100	0	114	31	14	19	35	1.91
58646944--58647003	25	2.4	27	79	20	78	3	35	3	58	1.31
58649882--58649934	21	2.5	21	90	0	79	30	35	9	24	1.87
58650907--58650984	18	4.2	17	79	12	75	62	2	1	33	1.17
58650907--58650984	9	8.4	9	71	19	54	62	2	1	33	1.17
58653006--58653068	31	2.0	31	84	6	81	42	1	3	52	1.27
58653077--58653143	12	5.6	12	76	13	50	53	0	0	46	1.00
58653089--58653154	27	2.4	28	75	17	66	54	0	0	45	0.99
58653078--58653138	24	2.5	22	75	17	59	52	0	0	47	1.00
58656283--58656557	50	5.5	49	68	6	167	25	24	19	29	1.98
58656265--58656562	100	3.0	100	89	2	438	26	24	19	29	1.98
58664298--58664337	20	2.0	20	100	0	80	30	10	25	35	1.88
58676059--58676100	14	3.1	13	78	21	50	59	4	0	35	1.19
58676067--58676104	16	2.4	16	82	4	51	60	5	0	34	1.19
58676293--58676339	16	2.8	16	78	12	51	59	4	4	31	1.36
58676347--58676381	18	1.9	18	88	11	54	62	8	0	28	1.24
58677084--58677127	23	2.0	23	86	8	65	13	9	9	68	1.40
58686966--58687072	15	7.3	15	71	6	76	21	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58687042--58687113	14	5.2	14	66	15	51	15	20	36	27	1.93
58686946--58687129	28	6.5	28	75	6	138	21	21	26	29	1.99
58689475--58689512	19	2.0	19	90	10	60	15	18	39	26	1.91
58692600--58692666	29	2.3	29	87	2	91	41	8	0	49	1.34
58692807--58692950	4	36.0	4	71	20	63	68	0	31	0	0.95
58692850--58692981	10	12.6	10	67	16	54	70	0	28	0	0.93
58692812--58692982	44	4.2	43	70	26	122	67	0	31	0	0.95
58692846--58693012	80	2.2	75	89	6	246	69	0	29	0	0.97
58692925--58692983	19	2.9	19	75	18	57	71	0	28	0	0.87
58698788--58698832	18	2.5	18	77	0	54	15	42	6	35	1.73
58699686--58699714	3	9.7	3	100	0	58	68	31	0	0	0.89
58699931--58700004	27	2.7	27	75	4	69	16	29	27	27	1.97
58700076--58700140	28	2.4	28	92	2	105	50	1	6	41	1.36
58700394--58700452	31	1.9	31	89	0	91	44	1	0	54	1.10
58701076--58701126	10	5.3	9	80	13	57	56	0	1	41	1.10
58701142--58701192	23	2.3	23	79	3	59	47	3	1	47	1.32
58702019--58702079	7	8.3	7	77	15	52	78	0	0	21	0.75
58702025--58702082	28	2.0	30	83	12	77	74	1	0	24	0.92
58702019--58702071	13	3.8	13	82	9	61	79	0	0	20	0.74
58702048--58702098	22	2.3	23	83	10	61	68	5	0	25	1.12
58707305--58707358	23	2.3	23	93	0	90	40	5	9	44	1.60
58707305--58707366	23	2.7	23	89	2	79	41	4	8	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58707385--58707423	19	2.2	18	86	9	53	74	2	12	10	1.17
58711583--58711620	20	1.9	20	94	0	67	26	31	10	31	1.90
58718866--58719012	37	3.9	36	81	6	141	37	18	14	29	1.91
58723890--58723923	13	2.5	14	90	4	52	58	26	14	0	1.36
58726647--58726738	37	2.4	38	82	5	107	29	41	13	16	1.86
58727264--58727305	21	2.0	21	85	0	57	33	30	28	7	1.84
58734601--58734648	3	16.0	3	95	0	87	31	33	2	33	1.70
58750251--58750299	18	2.7	18	75	12	55	63	0	4	32	1.13
58750406--58750438	9	3.7	9	91	0	57	30	0	6	63	1.18
58750380--58750437	18	3.2	17	83	13	64	24	1	3	70	1.12
58750406--58750442	18	2.1	18	100	0	74	32	0	5	62	1.18
58751160--58751214	26	2.1	26	100	0	110	36	21	3	38	1.71
58759816--58759862	20	2.3	20	85	7	60	10	4	2	82	0.88
58767912--58768052	49	2.9	49	83	6	189	43	20	21	14	1.87
58767912--58768051	46	3.0	45	85	7	154	43	20	21	14	1.87
58769311--58769481	44	3.9	44	78	1	180	26	18	25	30	1.98
58777446--58777490	8	5.8	8	89	5	56	17	0	4	77	0.92
58779916--58779977	30	2.1	30	93	6	108	29	12	16	41	1.85
58785929--58785954	3	8.7	3	100	0	52	65	0	0	34	0.93
58790688--58790741	16	3.4	16	73	14	58	31	14	3	50	1.61
58795495--58795530	18	2.1	17	89	5	54	55	0	5	38	1.23
58795488--58795546	24	2.5	23	78	8	64	54	3	3	38	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58799877--58800762	44	19.5	44	73	9	573	29	20	16	33	1.95
58799889--58800762	89	9.6	87	71	12	458	29	20	17	33	1.95
58799877--58800228	133	2.6	133	85	1	456	28	21	18	30	1.97
58799877--58800586	133	5.2	140	75	10	451	29	20	17	32	1.96
58809607--58809639	17	1.9	17	93	0	57	57	9	0	33	1.30
58810052--58810080	15	2.0	15	93	6	51	68	0	6	24	1.13
58819857--58819887	12	2.6	12	94	0	53	25	0	0	74	0.82
58820157--58820221	27	2.4	28	94	2	114	41	10	0	47	1.38
58820634--58820699	19	3.5	19	75	4	80	37	12	1	48	1.50
58820779--58820943	82	2.0	82	96	0	303	44	10	7	37	1.66
58821463--58821527	28	2.4	28	94	2	114	47	0	10	41	1.38
58825787--58825867	28	2.9	28	87	1	101	48	19	11	20	1.79
58825796--58825875	27	2.9	27	83	5	81	46	20	11	22	1.82
58827433--58827478	23	2.1	22	92	8	76	30	6	4	58	1.43
58827917--58827958	19	2.2	20	82	4	50	30	7	11	50	1.66
58828862--58828888	2	13.5	2	100	0	54	51	0	0	48	1.00
58831071--58831114	17	2.5	17	85	7	52	52	13	2	31	1.53
58838135--58838165	5	6.2	5	100	0	62	0	0	61	38	0.96
58847167--58847236	30	2.3	30	87	0	104	35	21	14	28	1.92
58847780--58847821	21	2.1	19	86	8	57	50	9	9	30	1.67
58849372--58849467	31	3.1	31	95	3	174	31	9	13	45	1.75
58850563--58850784	82	2.7	82	83	2	275	38	16	23	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58861362--58861440	5	16.0	5	78	15	76	37	0	1	60	1.05
58861372--58861440	24	2.9	23	83	10	84	37	0	1	60	1.06
58869299--58869359	31	2.0	31	83	0	77	39	11	4	44	1.62
58869483--58869541	29	2.0	30	93	3	102	54	11	1	32	1.47
58869483--58869562	31	2.7	29	88	5	106	52	10	2	35	1.48
58879350--58879405	25	2.2	25	81	6	69	33	21	21	23	1.97
58879386--58879472	25	3.5	25	75	6	86	36	19	25	18	1.94
58891404--58891432	13	2.1	14	93	6	51	72	13	0	13	1.13
58892944--58892982	17	2.6	14	78	21	51	33	2	7	56	1.41
58892950--58892988	16	2.4	17	95	4	71	41	2	5	51	1.38
58899746--58899798	21	2.5	20	76	8	61	32	9	28	30	1.88
58900744--58900775	16	2.0	16	100	0	64	50	18	12	18	1.78
58902658--58902700	18	2.4	18	85	11	61	41	18	0	39	1.51
58903641--58903674	17	1.9	18	94	5	61	14	44	29	11	1.81
58909640--58909681	17	2.5	17	96	0	75	16	47	26	9	1.77
58918914--58919102	51	3.7	51	83	6	222	24	15	27	32	1.95
58918970--58919136	51	3.3	50	79	5	160	24	15	28	31	1.96
58921448--58921590	39	3.7	39	91	0	223	47	19	2	30	1.64
58938297--58938353	28	2.0	30	86	6	82	36	14	24	24	1.92
58941423--58941463	3	13.7	3	94	0	73	31	0	2	65	1.05
58945073--58945115	22	2.0	22	95	0	77	44	11	4	39	1.62
58948762--58949318	274	2.0	274	91	0	898	27	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58957025--58957089	30	2.2	30	91	8	107	41	6	24	27	1.78
58962710--58962752	22	2.0	22	90	0	68	46	9	4	39	1.57
58967835--58967870	18	2.0	18	94	0	63	58	22	0	19	1.40
58969490--58969713	51	4.4	51	76	9	190	25	16	28	29	1.97
58969524--58969708	102	1.8	101	85	3	264	23	17	27	30	1.97
58969712--58969796	46	1.9	43	85	7	116	23	16	27	32	1.96
58969934--58969965	16	2.0	16	93	0	55	59	0	15	25	1.36
58984069--58984122	28	2.0	28	85	7	76	59	0	5	35	1.21
58985287--58985355	28	2.5	27	83	4	75	30	1	18	49	1.57
58985384--58985451	29	2.4	28	87	2	100	30	7	17	44	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216