genome.fa.s15.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  106  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33529786--33529820	18	1.9	18	88	0	52	57	0	8	34	1.29
33533317--33533430	25	4.6	25	76	14	92	25	26	21	27	1.99
33533315--33533430	50	2.3	50	82	2	135	25	26	20	26	1.99
33537450--33537476	13	2.1	13	100	0	54	29	7	14	48	1.71
33538324--33538476	43	3.6	42	73	3	135	38	18	18	24	1.93
33538448--33538589	43	3.3	43	74	11	139	35	19	16	28	1.93
33538350--33538637	86	3.4	85	80	2	290	36	18	17	28	1.93
33543697--33543766	34	2.1	34	97	0	131	21	0	28	50	1.49
33544319--33544374	26	2.2	26	100	0	112	26	3	7	62	1.38
33545464--33545499	18	2.0	18	88	0	54	33	0	0	66	0.92
33546952--33547035	42	2.0	42	97	0	159	26	25	22	26	2.00
33547603--33547652	25	2.0	25	100	0	100	40	16	12	32	1.84
33547680--33547909	126	1.8	126	91	0	379	30	19	14	36	1.91
33549538--33549635	50	1.9	51	89	2	153	39	13	15	31	1.86
33550132--33550227	31	3.1	31	95	3	174	45	13	9	31	1.75
33553367--33553471	10	10.7	10	70	20	62	0	11	12	75	1.10
33553384--33553443	20	3.0	20	85	2	84	1	13	13	71	1.22
33553365--33553419	28	1.9	28	85	10	76	1	10	10	76	1.10
33553396--33553461	30	2.2	30	83	5	80	1	13	12	72	1.19
33553415--33553472	30	1.9	30	93	6	100	0	10	12	77	0.99
33553662--33553715	25	2.1	26	83	13	67	66	1	9	22	1.30
33554032--33554127	31	3.1	31	95	3	174	45	13	9	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33555988--33556086	35	2.8	35	80	3	110	38	19	28	14	1.90
33556032--33556168	35	3.9	35	72	7	91	32	16	32	18	1.93
33556524--33556557	18	1.9	17	88	5	50	41	20	14	23	1.89
33560511--33560561	23	2.2	23	89	0	75	39	21	9	29	1.85
33561230--33561321	43	2.1	43	97	0	175	50	8	29	11	1.69
33566934--33566986	27	2.0	26	88	3	79	35	32	13	18	1.90
33567242--33567323	35	2.3	35	76	0	92	31	21	29	17	1.96
33568318--33568359	16	2.8	15	77	22	52	45	7	19	28	1.76
33571056--33571196	61	2.3	61	80	0	138	31	12	29	26	1.92
33571228--33571309	27	3.0	27	80	8	85	32	19	21	25	1.97
33573838--33573878	19	2.1	20	90	4	66	65	0	0	34	0.93
33573886--33574101	9	23.4	9	67	18	81	62	3	1	31	1.23
33573882--33573984	35	3.0	33	77	6	109	64	3	0	31	1.18
33573953--33574101	10	15.4	10	68	21	52	62	3	2	32	1.23
33573954--33574044	21	4.8	19	74	20	57	61	4	1	32	1.23
33573847--33574101	20	13.3	19	66	19	79	61	3	1	32	1.24
33573958--33574018	21	3.0	20	79	13	63	57	1	1	39	1.18
33574802--33574866	29	2.2	29	83	5	78	30	1	4	63	1.24
33574825--33574871	10	4.7	10	81	7	51	23	4	4	68	1.26
33574881--33574945	9	7.3	9	80	13	55	35	1	1	61	1.15
33582080--33582115	18	2.0	18	100	0	72	44	0	0	55	0.99
33587685--33588667	120	8.2	120	99	0	1930	44	1	6	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33588496--33588530	18	2.0	17	88	5	52	45	0	0	54	0.99
33588616--33588650	18	2.0	17	88	5	52	45	0	0	54	0.99
33588886--33588953	16	4.2	16	88	0	109	38	32	0	29	1.58
33589958--33589995	4	9.5	4	100	0	76	23	0	26	50	1.50
33594664--33594717	27	2.0	27	96	0	99	37	9	18	35	1.83
33596384--33596453	35	2.0	35	100	0	140	34	14	14	37	1.86
33611514--33611690	50	3.6	50	81	8	184	31	21	23	23	1.98
33614898--33614936	19	2.1	19	100	0	78	38	10	20	30	1.86
33618807--33618970	50	3.3	50	79	5	188	28	21	28	21	1.99
33620878--33620919	20	2.0	20	86	9	57	66	4	0	28	1.12
33620904--33620928	9	2.8	9	100	0	50	88	0	0	12	0.53
33620944--33620980	7	5.4	7	93	3	58	78	0	0	21	0.75
33625191--33625248	28	2.1	28	84	9	75	18	0	34	46	1.50
33626042--33626069	5	5.6	5	100	0	56	82	0	0	17	0.68
33626957--33626999	13	3.5	13	75	18	56	48	13	0	37	1.43
33626957--33627008	23	2.3	23	96	0	95	50	13	0	36	1.42
33631335--33631383	20	2.5	19	77	9	53	71	4	4	20	1.19
33632208--33632250	13	3.5	13	81	18	65	48	16	0	34	1.46
33632206--33632252	23	2.0	23	100	0	94	46	17	0	36	1.48
33632210--33632259	23	2.2	23	92	0	82	52	14	0	34	1.42
33644026--33644166	74	1.9	74	91	0	228	30	14	11	43	1.80
33644100--33644597	89	5.7	89	81	5	489	35	13	10	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33644100--33644597	178	2.8	176	82	7	557	35	13	10	40	1.79
33644184--33644947	89	8.9	84	79	8	489	34	12	10	43	1.75
33644461--33644947	168	2.9	167	84	5	565	33	11	10	44	1.74
33649514--33649552	20	2.0	20	89	0	60	33	7	10	48	1.66
33654360--33654533	40	4.3	40	81	1	179	21	29	16	31	1.96
33654375--33654537	80	2.0	80	85	2	220	20	28	17	33	1.95
33654469--33654534	20	3.3	20	72	8	62	22	34	18	24	1.96
33656792--33656829	15	2.5	15	100	0	76	21	26	26	26	1.99
33657966--33658055	25	3.6	25	79	11	103	27	22	22	27	1.99
33658930--33658981	20	2.7	20	72	16	56	28	9	1	59	1.40
33660820--33660852	16	2.1	16	94	0	57	36	6	12	45	1.66
33664839--33664934	40	2.4	40	87	0	129	19	34	15	30	1.93
33678722--33678746	13	1.9	13	100	0	50	44	8	8	40	1.63
33680411--33680475	21	3.0	21	75	16	62	49	0	1	49	1.10
33680423--33680468	22	2.0	24	91	8	78	52	0	2	45	1.13
33690059--33690115	27	2.1	27	100	0	114	36	15	17	29	1.91
33690259--33690350	45	2.0	45	100	0	184	31	28	14	26	1.94
33694833--33694901	36	1.9	36	90	0	111	40	26	14	18	1.89
33704038--33704067	14	2.1	14	93	0	51	26	6	20	46	1.75
33704816--33704841	8	3.2	8	100	0	52	26	0	34	38	1.57
33707804--33707868	21	3.2	21	64	27	59	18	15	15	50	1.78
33707796--33707871	39	1.9	39	97	0	143	18	17	14	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33711735--33711788	20	2.7	20	82	2	63	29	25	16	27	1.97
33711733--33711788	21	2.7	21	80	2	69	28	25	17	28	1.98
33715660--33715751	37	2.5	36	85	5	130	13	14	31	41	1.83
33716872--33716914	19	2.3	19	88	8	61	25	6	4	62	1.40
33717248--33717397	27	5.6	26	76	15	96	28	25	16	30	1.97
33717267--33717560	54	5.4	53	77	11	235	27	24	17	29	1.97
33717330--33717554	26	8.3	27	77	11	180	28	24	17	29	1.97
33717353--33717560	28	7.7	27	78	10	169	27	25	17	29	1.97
33720952--33721027	33	2.4	31	80	12	82	44	18	7	28	1.78
33721017--33721083	34	1.9	35	87	3	100	44	10	8	35	1.70
33722715--33722748	17	2.0	17	94	0	59	32	11	2	52	1.53
33722716--33722757	17	2.4	17	88	4	57	33	16	2	47	1.60
33724052--33724265	35	5.9	34	68	18	108	33	14	26	25	1.95
33724005--33724229	114	2.0	113	90	4	355	31	16	25	26	1.96
33725062--33725139	39	2.0	39	94	0	138	51	20	3	24	1.64
33732078--33732102	12	2.1	12	100	0	50	44	8	0	48	1.32
33732334--33732372	21	1.9	20	84	5	51	12	12	23	51	1.74
33736767--33736807	18	2.3	18	80	12	50	24	0	2	73	0.96
33739899--33739955	28	2.0	28	90	6	89	56	0	5	38	1.22
33740916--33740958	21	2.0	22	86	13	63	44	0	13	41	1.44
33740916--33740959	20	2.1	21	84	12	56	45	0	13	40	1.44
33741008--33741202	64	3.1	63	84	10	233	32	7	17	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33749317--33749359	6	7.2	6	79	10	52	30	6	0	62	1.21
33750781--33750820	19	2.1	19	90	9	64	30	10	10	50	1.69
33757688--33757721	14	2.4	14	95	0	59	17	41	29	11	1.85
33757953--33758045	22	4.2	21	84	11	116	20	30	1	48	1.57
33757953--33758045	11	8.5	10	88	8	105	20	30	1	48	1.57
33757953--33758045	44	2.1	44	86	11	129	20	30	1	48	1.57
33762400--33762454	21	2.6	21	82	0	56	32	45	14	7	1.72
33762569--33762667	34	3.0	33	74	14	98	41	9	6	43	1.61
33765665--33766080	126	3.3	126	92	0	690	25	23	18	31	1.97
33766119--33766394	96	2.9	96	80	6	310	40	15	3	40	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216