genome.fa.s15.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  170  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53548010--53548042	16	2.1	16	88	11	50	33	24	18	24	1.97
53576197--53576264	26	2.5	26	81	13	84	64	0	1	33	1.02
53596375--53596416	6	7.0	6	84	10	59	0	19	0	80	0.70
53596375--53596419	11	4.1	11	79	0	54	0	20	0	80	0.72
53596375--53596419	13	3.5	13	88	8	58	0	20	0	80	0.72
53601004--53601054	24	2.1	24	88	0	75	37	3	9	49	1.55
53605334--53605387	24	2.2	24	90	0	81	37	3	9	50	1.52
53606614--53606711	47	2.1	48	98	1	189	34	13	15	36	1.86
53607276--53607313	20	1.9	20	94	0	67	50	18	7	23	1.73
53607299--53607381	14	5.9	13	70	24	53	46	28	3	20	1.67
53607330--53607382	21	2.5	21	76	8	63	43	32	3	20	1.70
53607921--53607964	16	2.9	15	83	6	52	36	13	4	45	1.64
53608301--53608326	4	6.5	4	100	0	52	76	0	0	23	0.78
53610398--53610450	26	2.0	27	88	3	81	60	1	0	37	1.08
53617636--53617690	27	2.0	27	100	0	110	18	18	7	56	1.64
53621166--53621258	39	2.5	37	80	7	98	27	29	22	20	1.98
53621612--53621650	3	13.0	3	88	0	60	61	5	0	33	1.18
53621616--53621650	15	2.3	15	100	0	70	60	5	0	34	1.21
53622306--53622331	11	2.4	11	100	0	52	0	42	7	50	1.31
53622689--53622731	21	2.0	21	81	0	50	58	6	0	34	1.25
53627758--53627800	21	2.0	21	82	8	52	23	20	4	51	1.66
53628841--53628933	39	2.5	37	80	7	98	27	29	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53629988--53630013	11	2.4	11	100	0	52	0	42	7	50	1.31
53630371--53630413	21	2.0	21	81	0	50	58	6	0	34	1.25
53632240--53632433	25	7.8	25	74	5	133	18	26	19	35	1.95
53632232--53632443	50	4.3	50	73	10	164	19	25	20	33	1.96
53633724--53633907	17	10.6	17	69	17	87	43	11	11	32	1.78
53634672--53634728	8	7.0	8	76	4	51	1	21	0	77	0.86
53634673--53634750	24	3.1	24	78	10	77	3	23	0	73	1.00
53634854--53634926	14	4.7	16	70	16	55	1	32	0	65	1.01
53635434--53635588	30	5.2	30	77	3	114	45	5	20	28	1.73
53635799--53635824	5	5.2	5	100	0	52	80	0	0	19	0.71
53642302--53642367	29	2.3	28	82	10	80	22	16	21	39	1.92
53644642--53644690	24	2.0	24	84	7	64	32	4	24	38	1.74
53647917--53648033	58	2.0	58	98	0	225	25	11	15	47	1.78
53653878--53653942	21	3.2	21	66	26	59	44	30	9	15	1.78
53653883--53653959	38	2.0	38	100	0	154	41	32	7	18	1.79
53657845--53658195	43	8.2	43	86	3	435	31	21	22	24	1.98
53657845--53658147	126	2.4	128	90	2	475	32	21	22	23	1.98
53658631--53658708	21	3.7	21	85	0	93	5	37	20	37	1.75
53664227--53664561	9	37.8	9	65	20	102	34	2	17	45	1.62
53664220--53664565	16	20.7	16	66	22	119	34	2	17	45	1.61
53664273--53664310	19	2.0	19	85	10	51	31	0	18	50	1.47
53664292--53664397	25	4.2	24	75	10	88	30	1	20	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53664385--53664428	19	2.3	19	92	0	70	36	0	18	45	1.49
53664500--53664540	13	2.8	15	85	14	59	34	0	19	46	1.50
53666053--53666094	19	2.2	19	95	0	75	9	19	9	61	1.53
53666059--53666100	19	2.2	19	86	0	57	14	19	7	59	1.57
53667905--53667949	7	6.1	7	85	10	63	40	42	0	17	1.50
53667906--53668036	15	8.9	15	73	12	101	35	40	0	24	1.56
53667911--53668004	29	3.2	30	83	5	120	35	40	0	24	1.56
53668790--53668984	41	4.8	39	72	12	149	35	26	16	21	1.94
53672523--53672581	18	3.3	18	69	9	57	15	27	3	54	1.57
53672965--53673188	118	1.9	119	81	9	271	26	5	26	41	1.77
53674344--53674432	37	2.4	37	94	0	160	43	14	7	33	1.74
53677662--53677869	91	2.3	91	92	0	335	46	3	4	45	1.41
53677784--53677844	28	2.2	28	85	5	81	45	0	3	50	1.17
53677702--53677844	44	3.2	43	68	20	112	46	2	3	47	1.34
53677885--53678302	120	3.5	120	95	1	714	42	2	5	49	1.39
53678006--53678040	18	2.0	17	88	5	52	45	0	0	54	0.99
53678130--53678181	15	3.6	15	80	12	56	44	0	1	53	1.11
53678259--53678300	15	2.7	16	82	14	52	45	0	2	52	1.13
53678250--53678291	15	2.9	15	82	10	52	47	0	0	52	1.00
53678473--53678498	5	5.2	5	100	0	52	42	19	19	19	1.90
53678562--53678613	5	10.2	5	82	12	52	34	15	26	23	1.94
53678562--53678613	26	2.0	26	81	7	61	34	15	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53679119--53679176	16	3.2	17	79	16	64	51	0	24	24	1.48
53679534--53679570	9	4.1	9	92	0	65	29	10	13	45	1.77
53679623--53679673	9	5.7	9	83	0	66	39	19	11	29	1.87
53679623--53679673	18	2.8	18	96	0	93	39	19	11	29	1.87
53679805--53679842	16	2.4	16	86	0	58	28	34	2	34	1.71
53680944--53680979	13	2.8	14	88	12	51	38	25	8	27	1.84
53682993--53683039	24	2.0	23	91	4	76	2	17	10	70	1.26
53692096--53692152	24	2.4	24	77	13	64	22	1	1	73	1.02
53692118--53692153	9	4.0	9	89	10	56	22	2	0	75	0.94
53694933--53694988	28	2.0	28	100	0	112	50	7	17	25	1.72
53706250--53706310	30	2.0	30	93	0	104	42	18	21	18	1.89
53709728--53710533	44	17.6	44	73	9	529	33	15	19	31	1.93
53709820--53710533	89	7.9	88	76	7	414	33	15	19	31	1.93
53709728--53710307	184	3.2	177	80	5	525	32	15	20	31	1.93
53709728--53710405	272	2.5	268	79	6	707	33	15	19	31	1.93
53709728--53710446	139	5.3	133	77	5	535	33	15	19	31	1.93
53710551--53710651	44	2.3	44	85	0	139	34	16	24	23	1.95
53712072--53712107	9	4.0	9	92	7	56	22	2	0	75	0.94
53712050--53712129	38	2.1	39	81	6	92	22	6	1	70	1.17
53724837--53724911	36	2.1	36	80	14	84	53	2	1	42	1.23
53731792--53731830	21	1.9	20	84	5	51	53	10	5	30	1.56
53734451--53734500	15	3.2	15	76	20	57	50	14	0	36	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53735190--53735217	14	2.0	14	100	0	56	0	14	0	85	0.59
53735272--53735355	5	16.8	5	100	0	168	59	0	0	40	0.97
53735284--53735386	20	5.2	20	94	4	101	55	1	0	41	1.17
53741554--53741603	25	2.0	25	96	0	91	26	20	6	48	1.72
53742396--53742440	19	2.4	19	92	3	74	46	6	15	31	1.72
53745850--53745901	11	4.7	11	76	9	61	59	5	0	34	1.21
53745829--53745901	33	2.2	32	95	2	128	54	6	0	38	1.27
53747438--53747495	18	3.2	18	72	0	62	15	37	5	41	1.70
53748201--53748226	12	2.2	12	100	0	52	30	7	15	46	1.74
53749606--53749633	13	2.2	13	100	0	56	53	14	0	32	1.41
53750067--53750106	20	2.0	20	90	0	62	47	12	12	27	1.77
53751872--53751897	11	2.4	11	100	0	52	65	0	0	34	0.93
53754806--53754912	55	1.9	57	81	7	130	40	1	1	56	1.21
53755163--53755238	40	1.9	40	83	5	100	27	28	22	21	1.99
53755371--53755435	11	5.8	12	81	15	77	24	32	1	41	1.64
53755399--53755494	51	1.9	50	86	4	122	27	25	3	44	1.69
53757828--53758084	21	12.0	21	80	4	257	45	28	0	25	1.59
53757828--53758084	43	6.0	42	77	6	259	45	28	0	25	1.59
53757892--53757945	7	7.6	7	76	12	56	48	35	0	16	1.47
53757828--53758084	64	4.0	64	80	6	261	45	28	0	25	1.59
53757899--53757967	36	1.9	36	85	11	97	47	33	0	18	1.49
53760314--53760502	45	4.0	46	82	6	202	19	30	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53760314--53760504	95	1.9	98	89	6	298	19	30	24	25	1.98
53760679--53760710	13	2.5	13	94	0	55	56	12	0	31	1.37
53760922--53760979	30	1.9	30	89	0	89	31	24	3	41	1.71
53767928--53768176	50	4.8	50	85	4	284	20	29	24	26	1.99
53767927--53768176	100	2.4	104	88	6	357	20	29	24	26	1.99
53768271--53768302	13	2.5	13	94	0	55	56	12	0	31	1.37
53768514--53768571	30	1.9	30	89	0	89	31	24	3	41	1.71
53771642--53772197	125	4.4	125	89	1	828	29	23	17	29	1.97
53771642--53772208	251	2.3	249	90	1	850	29	23	16	30	1.97
53772324--53772360	9	4.1	9	89	0	56	56	27	0	16	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216