genome.fa.s15.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  122  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38770250--38770331	41	2.0	41	88	4	121	34	8	9	47	1.67
38772730--38772770	19	2.2	19	91	8	66	41	4	9	43	1.59
38772808--38772878	37	1.9	37	97	0	133	30	7	16	45	1.75
38776283--38776362	31	2.6	30	88	5	108	30	8	15	46	1.75
38788939--38788973	17	2.1	17	100	0	70	54	28	11	5	1.59
38807419--38807450	14	2.3	14	100	0	64	53	21	6	18	1.67
38809026--38809120	47	2.0	47	97	0	181	25	6	17	50	1.69
38809480--38809515	13	2.8	13	91	8	56	27	5	5	61	1.41
38813567--38813599	13	2.5	13	95	0	57	36	0	15	48	1.45
38813879--38813971	9	10.4	9	84	2	107	40	24	10	23	1.86
38813879--38813963	27	3.2	27	88	3	118	41	24	11	22	1.87
38813879--38813971	35	2.6	36	84	3	125	40	24	10	23	1.86
38826938--38827059	23	5.3	23	82	0	163	20	18	27	32	1.96
38826938--38827059	46	2.7	46	93	0	199	20	18	27	32	1.96
38830513--38830706	98	2.0	97	86	1	271	38	18	14	28	1.90
38834017--38834059	23	2.0	22	86	9	61	41	39	9	9	1.69
38837729--38837760	11	2.9	11	90	0	55	65	0	0	34	0.93
38837871--38837921	13	3.9	13	77	10	59	60	1	0	37	1.08
38839471--38839504	16	2.1	16	100	0	68	35	17	17	29	1.93
38842041--38842195	51	3.0	51	92	0	247	35	26	9	29	1.87
38842299--38842441	33	4.3	32	74	5	97	23	48	2	25	1.64
38843532--38843567	8	4.5	8	89	10	56	13	0	44	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38848896--38848972	22	3.4	22	67	19	68	35	2	25	36	1.70
38848891--38848985	46	2.1	46	100	0	190	33	2	23	41	1.66
38853412--38853506	46	2.1	46	95	0	172	34	2	21	42	1.65
38853957--38854293	171	2.0	170	84	2	444	43	20	10	25	1.84
38861336--38861395	16	3.8	16	93	0	102	28	0	31	40	1.57
38861336--38861403	32	2.1	32	91	5	111	29	0	30	39	1.57
38861336--38861403	16	4.2	16	83	7	84	29	0	30	39	1.57
38861533--38861842	157	2.0	157	94	0	548	44	3	4	47	1.41
38861579--38861900	157	2.0	155	81	5	349	46	4	3	44	1.42
38862719--38862748	13	2.3	13	100	0	60	60	13	6	20	1.55
38865956--38865981	9	2.9	9	100	0	52	19	11	34	34	1.88
38866220--38866335	55	2.2	53	84	9	146	18	0	33	47	1.49
38866220--38866363	7	21.0	7	74	8	75	19	0	32	47	1.55
38867075--38867162	40	2.2	41	83	4	108	52	12	12	22	1.73
38868822--38868873	25	2.2	24	86	10	72	44	17	0	38	1.49
38869384--38869842	220	2.0	229	88	6	684	31	6	10	51	1.62
38869861--38869918	19	3.1	19	85	5	91	44	12	3	39	1.58
38869858--38870243	9	40.6	9	68	18	133	45	16	1	36	1.56
38869955--38870196	40	6.3	38	72	17	164	45	18	0	35	1.53
38870134--38870174	21	2.0	21	90	0	64	43	12	0	43	1.41
38870052--38870243	61	3.1	61	77	15	193	46	18	0	34	1.54
38870020--38870242	58	3.8	58	85	5	299	46	17	0	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38870560--38870595	12	3.0	12	100	0	72	33	8	25	33	1.86
38871738--38872149	120	3.4	120	95	1	731	50	4	1	43	1.34
38871974--38872025	15	3.6	15	80	12	56	53	1	0	44	1.11
38872131--38872298	47	3.7	46	71	12	139	47	3	3	45	1.37
38872146--38872372	91	2.5	91	86	5	289	47	3	3	45	1.38
38872205--38872338	44	3.0	43	68	21	112	48	3	2	45	1.32
38875435--38875510	33	2.3	33	95	0	134	36	5	14	43	1.68
38875553--38875639	37	2.4	37	94	0	147	35	8	14	41	1.76
38876806--38876945	69	2.0	69	90	0	217	41	24	7	26	1.82
38878303--38878410	36	2.9	37	87	6	148	54	12	27	5	1.59
38880475--38880524	26	1.9	26	88	8	75	26	14	18	42	1.87
38881883--38882024	43	3.3	43	81	7	164	21	13	28	36	1.91
38884414--38884447	16	2.2	16	89	5	52	26	8	14	50	1.72
38886205--38886281	19	4.0	19	81	1	91	20	19	20	38	1.93
38887207--38887289	28	3.0	28	80	7	105	44	15	8	31	1.76
38890404--38890569	55	3.0	54	77	11	176	26	10	24	39	1.87
38890353--38890558	110	1.9	109	83	5	272	25	10	26	37	1.88
38896336--38896394	25	2.3	26	80	8	68	74	3	3	18	1.10
38896454--38896489	16	2.2	16	100	0	72	66	16	11	5	1.40
38899601--38899689	28	3.2	28	86	0	124	30	21	23	24	1.99
38900010--38900129	56	2.1	56	100	0	240	45	9	22	22	1.80
38902778--38902899	22	5.3	22	62	21	61	24	29	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38902750--38903095	47	7.3	47	90	2	464	26	30	9	32	1.88
38905889--38906113	40	5.7	40	84	5	278	24	21	28	25	1.99
38912541--38912714	55	3.1	55	99	0	339	45	9	22	22	1.80
38913894--38914117	79	2.8	80	82	8	269	24	21	27	25	1.99
38913894--38914117	40	5.7	40	84	6	278	24	21	27	25	1.99
38915579--38915665	26	3.3	26	82	7	104	33	18	25	22	1.97
38915615--38915673	27	2.2	27	82	8	68	33	20	22	23	1.97
38915885--38916255	81	4.6	82	78	6	332	20	15	23	39	1.91
38915885--38916269	54	7.2	54	84	2	348	21	15	22	40	1.91
38916094--38916233	53	2.6	53	90	0	217	20	14	25	40	1.90
38915887--38916269	27	14.3	27	79	5	301	20	15	22	40	1.91
38916463--38916500	19	2.0	19	85	10	51	23	44	18	13	1.85
38918369--38918561	105	1.9	100	80	5	224	30	23	12	33	1.92
38921181--38921214	5	6.8	5	96	0	59	0	76	0	23	0.79
38925718--38925781	18	3.5	17	73	14	56	40	6	18	34	1.76
38932663--38932715	16	3.2	16	89	5	88	24	1	37	35	1.67
38932932--38932973	15	2.7	16	82	14	52	52	2	0	45	1.13
38932941--38932982	15	2.9	15	82	10	52	52	0	0	47	1.00
38933047--38933093	16	3.0	16	78	12	53	51	2	0	46	1.13
38932930--38933186	119	2.1	120	95	1	462	48	5	1	43	1.38
38938290--38938329	21	1.9	21	90	10	64	25	22	25	27	2.00
38938288--38938335	21	2.3	21	78	7	62	20	27	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38938441--38938493	21	2.5	21	84	6	63	15	26	28	30	1.96
38941274--38941422	30	5.0	30	90	2	203	27	8	36	26	1.86
38941250--38941420	30	5.8	29	87	2	198	28	8	34	28	1.86
38941273--38941420	59	2.5	59	86	3	199	28	8	35	27	1.86
38943637--38943683	21	2.2	21	88	11	78	19	21	29	29	1.97
38958188--38958329	44	3.2	44	86	0	212	31	18	26	23	1.97
38958188--38958341	22	7.0	22	78	7	125	32	18	25	24	1.97
38969715--38969758	19	2.3	20	84	7	56	52	4	6	36	1.49
38969725--38969763	20	2.0	19	90	5	60	53	2	2	41	1.28
38969753--38969800	26	1.9	26	87	8	73	47	2	4	45	1.33
38970771--38970910	40	3.5	40	75	8	144	26	17	25	31	1.97
38976818--38976906	40	2.3	37	83	12	117	26	22	21	29	1.99
38977164--38977216	27	2.0	27	85	7	74	41	16	11	30	1.84
38977178--38977245	27	2.5	27	80	0	82	33	19	16	30	1.93
38987700--38988014	156	2.0	156	91	0	504	31	26	14	27	1.95
38992683--38992738	16	3.5	16	87	0	85	30	26	7	35	1.83
39000357--39000434	36	2.1	36	81	6	86	30	10	8	50	1.67
39003112--39003202	44	2.1	44	87	4	130	48	12	13	26	1.77
39015685--39015720	19	1.9	19	88	5	56	50	8	5	36	1.56
39016892--39016946	21	2.5	23	76	11	69	12	18	27	41	1.86
39016905--39016951	21	2.2	21	88	0	67	17	21	29	31	1.96
39028840--39028901	26	2.4	26	91	0	97	40	14	11	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39035660--39035719	27	2.2	27	90	0	93	38	16	23	21	1.93
39036146--39037727	536	3.0	533	93	0	2661	34	15	22	26	1.94
39042187--39042264	38	2.1	38	95	0	138	24	20	16	38	1.93
39057260--39057347	39	2.3	39	97	0	167	18	2	52	27	1.57
39057260--39057387	45	3.0	44	85	8	158	19	3	51	25	1.61
39057260--39057387	39	3.1	39	78	12	139	19	3	51	25	1.61
39059927--39060129	82	2.5	82	91	0	334	28	6	15	49	1.69
39061468--39061678	115	1.9	112	89	5	325	46	16	9	27	1.78
39062139--39062177	17	2.2	18	86	9	53	28	2	2	66	1.18
39063192--39063255	29	2.1	31	85	5	87	46	7	3	42	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216