genome.fa.s15.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  37  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10508449--10508475	14	1.9	14	100	0	54	51	33	0	14	1.43
10527339--10527409	6	11.2	6	73	20	56	0	18	5	76	0.98
10527342--10527389	21	2.3	21	85	7	62	0	18	6	75	1.01
10528272--10531532	544	6.0	543	92	0	5216	33	21	14	29	1.93
10536616--10536656	19	2.1	20	86	4	57	31	9	2	56	1.45
10537641--10537768	11	12.4	11	68	24	82	60	1	2	35	1.19
10537625--10537680	21	2.5	23	86	13	82	58	1	1	37	1.19
10537672--10537705	17	2.0	17	94	0	59	67	0	0	32	0.91
10537652--10537785	40	3.3	40	85	6	189	61	1	2	34	1.17
10537650--10537775	41	3.2	40	82	8	177	60	1	2	35	1.19
10537752--10537797	16	2.8	17	83	6	58	60	0	0	39	0.97
10546182--10546227	24	1.9	24	82	8	58	21	10	8	58	1.58
10547959--10547993	18	2.0	17	88	5	52	54	0	0	45	0.99
10547846--10548162	157	2.0	157	97	0	598	44	3	5	47	1.41
10548096--10548137	15	2.7	16	82	14	52	52	2	0	45	1.13
10548105--10548146	15	2.9	15	82	10	52	52	0	0	47	1.00
10548094--10548391	120	2.5	121	93	3	512	50	4	2	42	1.37
10548215--10548266	15	3.6	15	80	12	56	53	1	0	44	1.11
10548407--10548614	91	2.3	91	85	4	258	45	4	4	45	1.42
10550020--10550046	11	2.5	11	100	0	54	51	18	7	22	1.70
10551448--10551493	15	3.1	15	76	17	51	45	19	10	23	1.82
10552273--10552297	13	1.9	13	100	0	50	20	16	8	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10567151--10567220	30	2.4	30	80	2	79	31	11	11	45	1.76
10583289--10583639	85	4.0	85	78	9	354	26	25	19	29	1.98
10583332--10583648	128	2.5	128	80	8	331	25	24	19	30	1.98
10583289--10583626	43	7.8	43	77	6	290	26	26	18	28	1.98
10583946--10584016	21	3.4	21	96	0	133	1	46	16	35	1.56
10583993--10584143	66	2.3	66	92	0	257	13	26	18	41	1.88
10587335--10587413	7	11.3	7	72	0	50	36	40	1	21	1.62
10587335--10587385	14	3.6	14	91	0	75	35	43	0	21	1.53
10587366--10587413	21	2.3	21	77	0	60	39	37	2	20	1.65
10587475--10587552	7	11.0	7	74	17	63	39	41	0	19	1.51
10587477--10587556	21	3.8	20	75	11	70	40	41	0	18	1.51
10587469--10587558	21	4.2	20	74	13	65	40	40	0	20	1.52
10587565--10587651	39	2.2	38	86	6	120	50	22	2	24	1.61
10587775--10588386	114	5.5	112	76	10	463	27	21	19	31	1.97
10588017--10588213	102	1.9	103	86	5	283	27	19	17	35	1.94
10588198--10588455	114	2.3	114	86	4	342	24	22	20	32	1.98
10591157--10591626	102	4.6	102	93	0	814	18	21	29	31	1.97
10591157--10591626	205	2.3	204	94	0	814	18	21	29	31	1.97
10599372--10599432	29	2.1	29	100	0	122	42	13	13	31	1.82
10606240--10606300	29	2.1	29	100	0	122	42	13	13	31	1.82
10608563--10608597	15	2.4	15	90	4	54	48	0	8	42	1.33
10621063--10621157	49	2.0	48	89	8	149	54	11	5	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10621414--10621444	8	3.9	8	100	0	62	87	0	0	12	0.55
10621403--10621494	45	2.0	46	87	6	132	66	0	1	32	0.99
10621512--10621541	11	2.7	11	100	0	60	10	46	43	0	1.37
10636122--10636165	5	9.0	5	95	2	54	20	0	11	68	1.20
10637430--10637492	28	2.3	28	77	2	65	44	3	4	47	1.40
10638867--10638929	33	1.9	33	84	12	85	33	1	11	53	1.46
10643005--10643324	160	2.0	160	100	0	640	24	5	26	43	1.76
10644098--10644130	17	1.9	18	88	11	52	45	0	12	42	1.41
10648436--10648498	3	21.0	3	93	0	108	66	0	1	31	1.01
10649775--10649800	5	5.2	5	100	0	52	19	0	0	80	0.71
10651617--10651655	18	2.2	18	86	4	53	58	2	5	33	1.33
10653246--10653286	11	3.7	11	80	0	55	19	14	7	58	1.59
10653323--10653385	30	2.1	30	93	0	108	25	3	14	57	1.52
10660966--10661004	12	3.3	12	89	10	55	53	0	0	46	1.00
10662063--10662207	76	1.9	76	82	2	184	31	19	20	28	1.97
10663863--10663984	54	2.3	54	84	2	156	17	27	28	26	1.97
10664673--10664869	40	4.9	39	80	4	214	36	18	23	21	1.95
10664685--10664869	80	2.3	80	87	1	264	36	18	24	21	1.95
10665482--10665546	32	2.0	32	100	0	130	63	6	12	18	1.49
10667430--10667505	9	8.4	9	85	0	98	46	22	6	25	1.76
10667430--10667505	27	2.8	27	91	0	116	46	22	6	25	1.76
10667612--10667655	18	2.4	18	88	0	61	13	2	43	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10677308--10677346	18	2.2	18	86	9	53	30	2	2	64	1.21
10677459--10677518	27	2.2	27	82	8	68	46	0	3	50	1.18
10678043--10678091	23	2.2	23	88	3	73	46	10	6	36	1.63
10679816--10679905	45	2.0	45	95	0	162	45	15	17	21	1.85
10686975--10687029	25	2.2	25	87	9	78	32	21	30	14	1.93
10692164--10692213	24	2.1	24	88	0	73	40	26	20	14	1.90
10692241--10692299	25	2.5	23	75	5	55	32	20	27	20	1.97
10693289--10693343	26	2.1	26	100	0	110	34	10	18	36	1.86
10701010--10701046	18	2.1	18	94	0	65	16	59	0	24	1.37
10701192--10701221	11	2.7	11	94	0	51	53	6	30	10	1.60
10703153--10703210	21	2.8	19	79	10	62	60	1	0	37	1.07
10703153--10703209	11	5.5	11	74	14	50	61	1	0	36	1.07
10703163--10703231	30	2.3	30	90	5	104	55	0	1	43	1.08
10703177--10703268	19	4.8	20	73	14	59	61	2	2	33	1.20
10703166--10703258	48	1.9	49	80	10	111	59	2	2	36	1.22
10703194--10703286	19	4.7	19	74	10	71	61	3	2	33	1.24
10703220--10703333	10	11.8	10	68	19	55	61	2	3	32	1.27
10703395--10703432	4	9.5	4	88	0	58	47	26	2	23	1.65
10703751--10703790	20	2.0	20	95	0	71	32	5	0	62	1.17
10703808--10703850	19	2.4	17	81	14	50	30	6	4	58	1.45
10711221--10711288	30	2.3	30	86	0	91	23	22	32	22	1.98
10744571--10744651	41	2.0	41	90	0	126	24	4	22	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747788--10747839	21	2.5	20	87	3	68	46	30	3	19	1.68
10747798--10747842	14	3.2	14	83	0	54	42	31	2	24	1.67
10747782--10747853	21	3.5	21	78	1	65	43	34	4	18	1.69
10747889--10747941	28	1.9	27	88	3	79	32	20	15	32	1.93
10748961--10748996	13	2.8	13	95	0	63	61	8	0	30	1.26
10749417--10749450	16	2.1	16	88	0	50	50	14	17	17	1.79
10752248--10752288	21	2.0	21	90	0	64	29	21	29	19	1.98
10754551--10754827	138	2.0	137	98	0	536	29	18	18	34	1.94
10763290--10763348	31	1.9	31	92	0	100	37	11	11	38	1.79
10765720--10766208	132	3.7	132	84	4	664	28	23	18	30	1.97
10766197--10766431	88	2.7	88	89	0	353	22	26	22	27	2.00
10766265--10766402	44	3.1	44	67	19	124	21	24	26	26	1.99
10766279--10766424	44	3.3	45	65	18	115	21	26	22	30	1.99
10774770--10774841	27	2.7	27	88	0	108	38	19	16	25	1.92
10777423--10777455	16	1.9	18	88	11	52	54	9	18	18	1.69
10778524--10778564	21	2.0	20	85	4	55	56	0	0	43	0.99
10778731--10778765	18	1.9	18	88	0	52	31	2	2	62	1.24
10778737--10778813	19	4.1	19	74	15	70	33	3	0	62	1.14
10778769--10778817	10	4.9	10	82	7	64	36	2	0	61	1.08
10786780--10787469	348	2.0	346	92	1	1141	32	21	12	34	1.90
10789118--10789261	42	3.5	42	80	4	112	40	18	22	18	1.91
10789134--10789284	42	3.6	41	76	3	122	39	17	25	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10789152--10789310	83	1.9	83	83	2	203	39	15	23	20	1.91
10789163--10789327	83	2.0	83	79	2	179	39	16	22	21	1.92
10789803--10789840	16	2.4	16	90	0	58	47	5	5	42	1.48
10790000--10790103	52	2.0	52	94	0	181	25	25	13	34	1.93
10790284--10790317	16	2.1	16	100	0	68	44	11	0	44	1.40
10792732--10792827	45	2.1	45	92	3	158	36	12	13	37	1.83
10794265--10794296	10	3.2	10	90	0	55	53	0	6	40	1.26
10803908--10803978	23	3.1	23	80	13	67	67	0	8	23	1.18
10803995--10804036	11	3.8	11	84	9	59	83	0	16	0	0.65
10810504--10810574	30	2.4	30	82	0	79	26	57	2	12	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216