genome.fa.s15.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  116  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37075946--37075986	17	2.5	17	84	4	57	7	17	2	73	1.17
37081348--37081390	22	2.0	22	81	4	52	46	4	0	48	1.22
37082326--37082388	30	2.1	30	84	0	81	39	7	20	31	1.81
37083688--37083729	20	2.2	19	87	12	59	7	7	2	83	0.89
37091134--37091189	26	2.2	26	87	3	78	71	8	3	16	1.25
37091186--37091220	10	3.4	10	92	4	52	80	0	8	11	0.92
37091184--37091225	16	2.6	16	85	11	59	78	0	9	11	0.96
37093211--37093373	30	5.5	30	81	7	181	36	10	28	24	1.88
37099718--37100270	306	1.8	304	90	1	883	37	9	16	36	1.82
37101157--37101493	30	11.3	30	71	11	97	39	14	22	23	1.90
37101359--37101439	29	2.7	29	85	11	110	43	12	23	20	1.86
37101157--37101493	150	2.3	149	84	6	439	39	14	22	23	1.90
37102679--37102719	20	2.0	20	85	0	55	34	7	2	56	1.40
37104128--37104156	14	2.0	15	93	6	51	82	0	0	17	0.66
37106915--37107023	27	4.0	27	83	2	130	37	21	20	21	1.94
37108128--37108159	16	2.0	16	93	0	55	40	6	34	18	1.76
37108446--37108497	22	2.4	21	79	17	54	55	5	0	38	1.24
37108372--37108662	120	2.4	119	93	2	485	52	4	1	42	1.27
37108589--37108656	26	2.6	27	81	11	88	60	1	0	38	1.06
37111577--37111614	16	2.3	17	86	4	51	65	5	18	10	1.41
37112071--37112114	20	2.2	20	100	0	88	15	15	45	22	1.85
37125708--37125905	105	1.9	106	88	3	301	36	18	15	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37126713--37126769	23	2.4	23	76	2	60	56	1	12	29	1.46
37127001--37127077	22	3.6	20	68	29	52	64	2	3	28	1.24
37127044--37127083	20	2.0	20	85	9	55	62	2	5	30	1.29
37129147--37129172	11	2.4	11	100	0	52	38	7	0	53	1.30
37130251--37130275	6	4.2	6	100	0	50	36	16	32	16	1.90
37141401--37141516	57	2.0	56	85	6	153	46	6	18	28	1.74
37141454--37141565	51	2.2	50	85	6	147	45	9	19	25	1.81
37141815--37141856	20	2.1	20	100	0	84	47	4	14	33	1.65
37148459--37148500	3	14.0	3	94	0	75	64	2	33	0	1.07
37155326--37155374	20	2.6	19	78	12	57	40	2	4	53	1.32
37174633--37174657	7	3.6	7	100	0	50	16	0	36	48	1.46
37174667--37174714	22	2.2	21	85	3	60	22	0	37	39	1.55
37177199--37177278	31	2.6	31	86	7	117	18	13	20	47	1.82
37177772--37177813	15	2.8	15	88	0	57	38	2	0	59	1.10
37177788--37177825	17	2.2	18	90	4	60	36	2	0	60	1.11
37177872--37177940	12	5.4	12	68	19	50	52	10	0	37	1.36
37177884--37177917	16	2.1	16	88	0	50	55	11	0	32	1.36
37177943--37178017	20	4.1	19	69	20	61	50	16	1	32	1.53
37177999--37178341	41	8.4	41	76	16	229	46	20	0	31	1.55
37178024--37178325	16	18.7	16	70	18	119	47	20	0	31	1.55
37178051--37178182	9	14.6	9	71	13	92	42	20	1	35	1.62
37177963--37178309	75	4.7	74	76	15	278	46	20	0	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37177991--37178341	109	3.2	107	84	10	430	47	20	0	31	1.55
37177936--37178341	25	16.4	25	76	17	229	47	20	0	31	1.57
37177950--37178341	50	7.7	50	76	17	292	47	20	0	31	1.56
37178060--37178338	84	3.2	82	79	13	187	47	20	0	30	1.56
37180975--37181166	42	4.5	43	82	5	232	27	17	28	26	1.98
37180967--37181124	85	1.9	85	90	2	255	27	18	27	27	1.98
37180967--37181166	85	2.3	84	84	6	251	28	18	28	26	1.98
37180975--37181189	42	5.1	42	82	8	206	26	18	28	26	1.98
37198331--37198570	29	8.2	29	82	3	257	20	27	13	37	1.91
37198331--37198570	117	2.1	117	88	3	358	20	27	13	37	1.91
37202230--37202273	20	2.2	20	83	0	52	45	13	0	40	1.44
37202497--37202524	4	7.0	4	100	0	56	25	50	0	25	1.50
37203987--37204235	110	2.3	110	82	5	290	28	24	17	29	1.97
37204041--37204239	110	1.8	110	86	4	294	27	25	17	29	1.98
37204298--37204339	20	2.1	20	95	0	75	14	30	28	26	1.95
37208416--37208448	17	1.9	17	100	0	66	48	0	9	42	1.35
37216490--37216520	6	5.2	6	100	0	62	35	0	32	32	1.58
37219054--37219124	36	2.0	36	91	0	115	50	22	14	12	1.76
37225102--37225141	18	2.2	18	90	0	62	70	5	12	12	1.33
37225109--37225168	18	3.3	18	80	19	72	68	6	13	11	1.39
37231868--37231940	12	6.1	12	70	17	53	13	23	1	61	1.40
37231982--37232027	21	2.1	22	84	11	60	15	13	2	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37234185--37234229	20	2.2	20	85	14	58	53	13	4	28	1.59
37236139--37236199	33	1.9	32	87	12	90	11	21	1	65	1.33
37236139--37236232	33	2.9	33	80	12	88	10	24	1	63	1.32
37236169--37236233	27	2.5	26	80	7	69	12	26	0	61	1.31
37237481--37237562	41	2.0	41	95	0	146	32	8	9	48	1.66
37240907--37240945	19	2.1	19	100	0	78	38	5	15	41	1.69
37240983--37241062	41	2.0	41	94	0	142	30	5	13	51	1.63
37254309--37254351	17	2.5	17	84	3	50	41	2	0	55	1.12
37254725--37254795	22	3.2	22	86	7	99	33	26	1	38	1.65
37254766--37254824	30	2.0	30	93	0	100	32	33	0	33	1.58
37254796--37254837	22	1.9	22	90	0	66	33	33	0	33	1.58
37254883--37254944	30	2.1	30	87	6	90	38	0	1	59	1.07
37255035--37255068	15	2.3	15	90	5	52	26	0	5	67	1.13
37256599--37256626	6	4.7	6	100	0	56	35	50	0	14	1.43
37256571--37256655	41	2.1	41	93	4	145	36	36	1	25	1.64
37256611--37257259	29	23.0	29	78	9	545	39	23	1	34	1.64
37256646--37257081	81	5.2	81	72	13	305	40	22	1	35	1.62
37256613--37257205	196	3.0	196	90	3	876	40	24	1	34	1.64
37256614--37257209	167	3.6	167	87	5	771	40	24	1	34	1.64
37257010--37257122	23	4.4	23	70	21	82	43	21	0	34	1.59
37262354--37262408	27	2.0	27	85	0	74	56	12	5	25	1.58
37263058--37263123	31	2.1	31	88	5	98	34	10	24	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37263993--37264037	24	1.9	23	82	13	56	48	20	6	24	1.73
37265143--37265371	100	2.3	101	89	1	361	30	24	13	31	1.93
37265229--37265370	33	4.3	31	71	7	86	28	23	14	33	1.94
37278046--37278077	16	2.0	16	93	0	55	31	21	0	46	1.52
37279581--37279810	87	2.6	87	90	1	354	36	19	16	27	1.93
37281229--37281281	26	2.1	25	85	3	70	28	35	16	18	1.93
37302228--37302359	69	1.9	67	87	3	192	33	12	11	43	1.78
37307056--37307172	23	5.1	23	69	10	78	26	21	19	32	1.97
37307913--37307950	18	2.1	18	100	0	76	15	15	10	57	1.64
37311004--37311312	132	2.3	132	81	5	347	31	11	21	35	1.90
37310952--37311452	133	3.8	132	75	6	430	30	13	21	34	1.92
37310933--37311445	265	1.9	261	78	8	547	30	12	21	34	1.91
37316269--37316314	10	4.5	10	86	2	65	28	17	2	52	1.56
37316261--37316314	10	5.3	10	86	4	54	31	16	1	50	1.56
37316246--37316325	20	4.0	20	70	20	67	28	17	2	51	1.58
37317354--37317392	20	2.0	20	85	10	53	76	10	2	10	1.10
37318438--37318481	20	2.1	21	87	4	63	43	2	36	18	1.63
37320609--37320793	40	4.7	40	83	6	225	25	27	22	24	2.00
37320609--37320793	79	2.3	80	80	8	216	25	27	22	24	2.00
37321931--37322050	56	2.1	56	98	0	231	22	23	9	45	1.81
37322430--37322492	30	2.1	30	94	5	110	25	30	25	19	1.98
37327615--37327725	50	2.2	50	81	0	141	32	29	22	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37329833--37329863	16	1.9	16	93	0	53	22	16	22	38	1.92
37333369--37333507	42	3.2	43	81	7	149	30	27	17	24	1.98
37336846--37336943	42	2.3	42	89	0	151	19	32	23	24	1.97
37337050--37337091	21	2.0	21	95	0	75	45	23	9	21	1.81
37347525--37347675	43	3.5	43	90	0	230	32	25	15	26	1.95
37347790--37347996	31	6.7	31	85	1	274	42	16	9	30	1.80
37347790--37347981	61	3.1	61	87	3	269	43	17	8	30	1.78
37347790--37348007	92	2.4	92	87	2	285	44	16	8	30	1.78
37350570--37350618	17	3.0	16	75	16	55	24	16	22	36	1.94
37350556--37350631	33	2.3	32	82	6	91	30	18	18	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216