genome.fa.s15.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  186  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58086586--58086615	13	2.3	13	100	0	60	53	0	0	46	1.00
58086576--58086623	20	2.5	20	82	3	62	60	0	0	39	0.97
58086605--58086871	36	7.5	34	73	16	197	52	2	2	43	1.26
58086657--58086703	21	2.2	22	88	3	69	51	2	2	44	1.25
58086715--58086790	14	5.5	14	68	14	59	53	1	1	43	1.17
58086803--58086847	21	2.1	21	88	8	65	62	0	2	35	1.08
58086595--58086861	110	2.5	110	73	14	259	52	2	2	43	1.26
58086825--58086871	11	4.1	12	78	10	53	59	0	0	40	0.97
58086911--58086954	9	5.0	9	81	15	56	75	2	0	22	0.92
58086911--58086971	21	3.0	21	83	9	65	75	1	1	21	0.98
58086918--58086971	26	2.1	26	83	13	67	77	1	1	18	0.95
58086947--58087026	18	4.5	18	74	11	67	72	2	7	17	1.19
58088125--58088220	43	2.3	42	83	8	115	9	9	5	76	1.16
58088232--58088279	18	2.7	18	80	9	53	12	10	2	75	1.14
58088189--58088301	40	2.9	38	80	13	106	12	8	5	73	1.23
58088826--58088866	7	5.9	7	91	0	55	26	0	4	68	1.10
58089548--58089605	14	4.5	13	72	21	50	77	6	8	6	1.12
58089551--58089586	18	1.9	19	88	5	56	80	5	5	8	1.01
58089550--58089615	26	2.5	25	76	11	69	75	7	9	7	1.18
58093706--58093809	8	12.4	8	66	20	52	33	0	15	50	1.51
58093706--58093783	27	3.1	27	89	10	114	34	0	12	52	1.40
58093623--58093762	19	7.1	19	71	19	99	32	0	12	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58093697--58093783	21	4.0	21	78	18	97	32	0	13	54	1.40
58093981--58094058	38	2.1	38	97	0	147	56	3	2	37	1.31
58094095--58094136	16	2.7	15	85	7	57	38	2	2	57	1.25
58094205--58094267	21	3.0	21	85	2	81	58	14	0	26	1.36
58094301--58094338	19	1.9	19	89	5	58	57	7	0	34	1.28
58094340--58094403	27	2.4	27	91	0	110	12	31	25	31	1.92
58094468--58094499	12	2.8	12	86	13	50	71	0	0	28	0.86
58101865--58101890	3	8.7	3	100	0	52	69	0	0	30	0.89
58108790--58108838	22	2.3	22	86	13	75	46	0	2	51	1.12
58108790--58108838	21	2.3	21	89	6	73	46	0	2	51	1.12
58112569--58112607	20	1.9	20	85	15	53	41	7	5	46	1.55
58113267--58113324	22	2.5	23	83	5	64	50	1	3	44	1.29
58113335--58113474	59	2.4	59	98	0	271	39	4	9	47	1.55
58113456--58113483	9	3.1	9	100	0	56	32	0	10	57	1.33
58114343--58114445	50	2.0	54	90	7	169	58	0	1	39	1.09
58114418--58114478	15	4.2	15	75	19	58	57	0	3	39	1.15
58114472--58114505	17	2.0	17	88	0	50	64	0	0	35	0.94
58114381--58114535	84	1.9	81	93	4	265	60	0	2	37	1.11
58114343--58114445	11	9.9	11	74	18	80	58	0	1	39	1.09
58114343--58114538	43	4.7	41	83	8	238	59	0	2	38	1.11
58114364--58114539	93	1.9	93	81	9	216	59	0	2	38	1.12
58115410--58115607	104	1.9	104	84	4	265	25	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58118549--58118591	14	3.1	14	86	6	70	55	16	6	20	1.64
58120086--58120168	43	1.9	43	95	0	148	38	8	26	26	1.85
58122301--58122353	19	2.6	21	82	11	58	22	1	24	50	1.59
58123984--58124031	22	2.1	23	85	11	64	56	0	2	41	1.11
58125255--58125294	16	2.5	17	77	22	50	27	2	0	70	1.01
58145071--58145112	19	2.2	19	87	8	59	28	0	9	61	1.27
58150764--58150845	30	2.7	31	77	7	87	58	17	3	20	1.53
58151141--58151198	25	2.2	27	90	6	93	48	6	5	39	1.52
58155888--58156112	113	2.0	111	93	1	387	36	16	12	35	1.86
58173893--58173990	50	2.0	50	87	2	144	48	11	8	31	1.68
58176232--58176262	9	3.4	9	90	0	53	25	12	22	38	1.90
58182315--58182422	15	7.2	15	69	12	87	43	7	23	25	1.79
58182308--58182422	30	3.8	30	97	0	203	44	6	23	25	1.78
58187006--58187126	15	8.1	15	69	11	79	42	6	23	27	1.78
58186999--58187113	30	3.8	30	96	0	194	45	6	22	25	1.77
58209379--58209432	17	3.4	17	72	12	51	44	1	0	53	1.11
58209411--58209490	40	2.0	40	95	4	144	37	1	0	61	1.04
58214294--58214649	176	2.0	178	91	3	576	40	14	14	31	1.85
58214773--58214811	2	19.5	2	100	0	78	51	0	0	48	1.00
58215070--58215116	20	2.2	22	77	7	53	25	10	2	61	1.39
58217691--58217717	3	9.0	3	100	0	54	33	0	0	66	0.92
58218723--58218774	24	2.2	24	92	0	86	25	7	17	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58219259--58219289	10	3.1	10	100	0	62	48	9	0	41	1.36
58219314--58219364	16	2.8	19	67	27	56	37	0	11	50	1.39
58227024--58227719	110	6.1	111	78	15	678	38	13	15	31	1.86
58227706--58228007	117	2.6	115	83	6	365	30	16	14	38	1.89
58229752--58229800	18	2.5	19	80	12	55	30	0	2	67	1.02
58233493--58233522	10	3.0	10	95	0	51	46	23	0	30	1.52
58236515--58236561	24	2.0	24	91	8	78	53	0	19	27	1.45
58238709--58238805	46	2.1	46	90	1	151	34	7	9	49	1.62
58250616--58250656	21	2.0	21	90	9	66	39	4	14	41	1.67
58262197--58262233	19	1.9	19	94	0	65	35	10	16	37	1.83
58266467--58266505	20	1.9	20	89	5	60	43	0	23	33	1.54
58266690--58266762	29	2.6	27	69	16	67	21	17	21	38	1.93
58268137--58268198	30	2.0	31	87	3	90	20	43	0	35	1.53
58268301--58268359	30	2.0	30	90	6	93	20	44	0	35	1.52
58269359--58269399	19	2.1	20	86	4	57	31	9	2	56	1.45
58270752--58270790	12	3.2	12	85	0	51	20	23	5	51	1.67
58271043--58271231	50	3.7	50	80	4	189	23	28	21	26	1.99
58274398--58274433	15	2.4	15	90	0	54	30	25	8	36	1.85
58275004--58275041	7	5.6	7	93	6	69	86	0	13	0	0.56
58293234--58293283	26	1.9	26	84	8	66	30	0	2	68	1.01
58298037--58298103	31	2.2	30	83	2	80	34	10	14	40	1.81
58298045--58298103	31	1.9	31	86	3	84	33	10	16	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58307294--58307376	43	1.9	43	80	9	98	22	15	28	32	1.95
58313162--58313201	22	1.9	20	85	10	53	45	20	2	32	1.64
58314473--58314544	24	3.0	24	81	6	83	36	19	26	18	1.94
58324010--58324044	17	2.1	17	88	0	52	51	0	14	34	1.42
58327712--58327752	17	2.5	16	84	4	55	58	0	12	29	1.34
58328756--58328809	26	2.1	26	100	0	108	57	14	3	24	1.54
58329365--58329435	28	2.5	29	93	4	119	39	9	1	49	1.45
58329503--58329583	27	3.0	27	90	0	126	25	23	40	9	1.85
58329511--58329605	27	3.5	27	85	0	82	24	28	34	12	1.92
58329891--58329942	21	2.5	21	81	6	61	30	1	9	57	1.42
58330664--58330708	18	2.5	18	85	0	63	28	4	46	20	1.69
58333076--58333114	14	2.7	15	84	8	53	61	5	5	28	1.39
58333088--58333116	14	2.1	14	100	0	58	55	0	6	37	1.27
58334075--58334111	17	2.2	17	100	0	74	45	8	16	29	1.76
58335444--58335513	28	2.5	29	88	6	110	47	0	10	42	1.37
58335551--58335591	19	2.2	19	86	8	57	68	4	0	26	1.10
58336336--58336417	5	17.0	5	74	14	57	1	35	0	63	1.02
58336282--58336434	34	4.6	32	73	22	120	0	32	0	66	0.96
58336286--58336390	36	2.9	35	80	18	110	0	32	0	66	0.98
58336327--58336459	38	3.5	38	75	12	103	0	36	0	63	1.00
58336376--58336421	14	3.3	14	75	22	51	0	34	0	65	0.93
58336338--58336421	28	3.0	28	87	3	116	1	34	0	64	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58336406--58336448	22	1.9	23	85	4	61	0	30	0	69	0.88
58336313--58336448	32	4.5	28	68	25	82	0	31	0	67	0.96
58336378--58336450	18	4.2	17	73	19	55	0	34	0	65	0.93
58336383--58336462	42	1.9	42	84	0	106	0	36	0	63	0.94
58336579--58336618	16	2.4	16	91	4	62	5	2	7	85	0.83
58338558--58338636	39	2.0	41	90	5	126	65	0	1	32	1.00
58351862--58351886	8	3.1	8	100	0	50	24	12	0	64	1.27
58352176--58352216	21	1.9	22	85	5	57	9	14	2	73	1.19
58356741--58356784	22	2.0	22	82	8	54	40	0	0	59	0.98
58361390--58361450	20	3.1	20	79	11	56	47	6	0	45	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216