genome.fa.s15.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  123  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39064324--39064379	23	2.3	26	87	9	82	71	0	1	26	0.96
39064653--39064767	47	2.5	44	81	14	124	33	3	0	61	1.19
39064711--39064847	18	8.0	17	67	13	66	29	4	2	63	1.26
39064722--39064801	16	4.7	16	75	13	61	32	5	0	62	1.17
39067185--39067399	109	2.0	108	84	2	279	31	22	14	31	1.94
39072438--39072477	17	2.4	17	86	0	53	25	17	10	47	1.78
39072907--39073033	55	2.3	55	88	0	182	23	22	29	24	1.99
39072907--39073069	55	3.0	54	81	5	177	22	22	30	25	1.99
39075132--39075162	16	1.9	16	100	0	62	58	19	0	22	1.40
39082011--39082753	370	2.0	370	85	3	1012	35	14	18	31	1.91
39083360--39083420	26	2.4	25	86	2	77	45	13	9	31	1.75
39084710--39084778	26	2.6	27	81	2	77	33	31	14	20	1.92
39086581--39086670	27	3.3	26	87	3	117	20	16	21	42	1.89
39088988--39089056	31	2.3	31	85	7	88	46	18	8	26	1.78
39090547--39090623	23	3.2	23	68	22	68	18	3	23	54	1.60
39092247--39092330	41	2.0	41	84	4	107	35	4	7	52	1.50
39096406--39096546	44	3.1	44	71	16	153	46	3	5	44	1.44
39096335--39096564	47	5.0	45	68	18	170	45	3	5	46	1.41
39096540--39096597	25	2.3	24	82	8	62	46	0	3	50	1.18
39096327--39096618	91	3.2	91	93	1	482	46	3	4	45	1.41
39096638--39097049	120	3.4	120	97	0	772	43	2	5	49	1.37
39096759--39096793	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39096768--39096956	43	4.6	42	64	19	103	42	2	4	50	1.35
39096879--39096912	17	2.0	17	88	11	52	44	0	0	55	0.99
39097011--39097059	16	3.1	16	80	11	57	46	0	2	51	1.12
39097197--39097287	45	2.0	44	85	6	121	34	26	4	35	1.76
39097264--39097328	16	4.1	16	87	0	103	21	29	4	44	1.72
39101284--39101317	6	5.7	6	100	0	68	29	0	17	52	1.45
39101342--39101548	91	2.3	91	94	0	369	47	3	3	44	1.37
39101373--39101516	47	3.1	46	67	16	127	45	2	2	48	1.31
39101463--39101523	28	2.2	28	85	5	81	47	1	3	47	1.28
39101553--39101858	117	2.6	118	86	7	422	42	2	4	50	1.38
39101695--39101741	16	3.0	16	78	12	53	46	0	2	51	1.13
39101564--39101858	120	2.5	117	89	3	439	42	3	4	49	1.39
39103682--39103722	20	2.0	20	95	0	73	34	7	0	58	1.26
39103781--39103851	27	2.6	27	82	4	81	29	26	25	18	1.98
39103951--39104051	16	6.5	15	72	17	71	72	0	27	0	0.85
39103952--39104052	26	3.8	26	70	7	78	72	0	27	0	0.85
39103955--39104026	31	2.4	30	82	13	94	69	0	30	0	0.89
39103981--39104050	19	3.8	20	76	10	69	75	0	24	0	0.80
39109795--39109837	18	2.4	18	92	0	68	16	48	4	30	1.66
39110836--39110874	21	1.9	20	89	5	60	0	28	0	71	0.86
39110963--39111022	27	2.2	27	90	0	93	16	31	26	25	1.96
39110963--39111033	27	2.6	27	84	4	90	15	30	26	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39111172--39111214	22	2.0	22	85	0	59	9	13	2	74	1.16
39112320--39112354	3	11.7	3	100	0	70	0	0	31	68	0.90
39113339--39113363	12	2.1	12	100	0	50	24	36	24	16	1.94
39113526--39113583	9	6.4	9	89	0	80	44	24	6	24	1.77
39113526--39113575	18	2.8	18	96	0	91	44	24	8	24	1.80
39113695--39113719	13	1.9	13	100	0	50	12	0	48	40	1.40
39113690--39113724	18	1.9	18	94	0	61	11	0	48	40	1.39
39115059--39115150	41	2.3	41	96	1	168	34	4	4	56	1.39
39115127--39115157	3	10.3	3	100	0	62	32	0	0	67	0.91
39117775--39117801	1	27.0	1	100	0	54	0	0	0	100	0.00
39119908--39119941	12	2.8	13	86	13	54	50	0	0	50	1.00
39119907--39119977	34	2.1	35	84	12	94	47	0	2	49	1.16
39119940--39120076	61	2.3	57	82	6	157	43	0	2	52	1.21
39120039--39120090	26	2.0	26	88	3	79	50	3	0	46	1.20
39120957--39121034	27	2.9	27	82	3	95	19	21	34	24	1.96
39125948--39125991	16	2.8	15	83	10	61	59	2	2	36	1.23
39126101--39126222	60	2.0	60	85	3	165	54	13	0	30	1.45
39126210--39126472	21	12.2	21	72	19	154	55	14	0	30	1.45
39126284--39126473	19	9.4	19	77	17	163	55	13	0	30	1.43
39126284--39126508	120	1.8	122	88	5	348	55	14	0	29	1.46
39126608--39126651	17	2.6	17	79	13	54	0	34	0	65	0.93
39126759--39126828	27	2.6	27	88	0	113	20	32	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39128664--39128817	58	2.6	60	78	12	163	49	6	4	39	1.49
39128836--39128867	16	2.0	16	93	0	55	53	0	0	46	1.00
39132301--39132428	42	3.0	42	77	17	138	21	18	31	28	1.97
39140493--39140585	44	2.1	46	85	4	127	38	23	4	33	1.75
39140567--39140637	16	4.4	16	92	0	115	28	29	5	36	1.80
39163257--39163700	167	2.7	167	93	0	755	35	18	12	33	1.89
39164097--39164133	18	2.1	18	94	0	65	27	24	27	21	1.99
39172062--39172135	29	2.6	29	89	4	107	22	14	18	43	1.87
39175366--39175604	48	5.0	48	85	1	282	28	19	26	25	1.99
39177304--39177599	50	5.8	50	81	5	258	20	27	24	27	1.99
39183661--39183686	12	2.2	12	100	0	52	38	7	7	46	1.61
39184945--39184980	16	2.2	16	90	0	54	25	8	0	66	1.19
39199265--39199314	19	2.5	20	87	3	66	26	8	4	62	1.41
39208457--39208685	76	3.0	76	98	0	440	47	13	17	22	1.82
39209528--39209553	9	2.9	9	100	0	52	42	23	0	34	1.54
39209670--39209701	16	1.9	17	93	6	57	25	37	25	12	1.91
39213317--39213375	24	2.5	24	88	0	91	44	0	25	30	1.55
39213441--39213505	20	3.4	19	69	14	62	35	4	15	44	1.67
39213416--39213528	37	3.1	37	94	1	192	32	4	15	47	1.65
39213428--39213522	17	5.2	17	65	14	55	33	3	13	49	1.58
39213529--39213625	9	10.6	9	86	4	140	23	9	31	35	1.87
39213731--39213796	29	2.3	27	78	16	71	28	12	27	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39213786--39213810	12	2.1	12	100	0	50	16	24	36	24	1.94
39214789--39214844	21	2.6	21	83	8	60	33	17	21	26	1.96
39229419--39229458	15	2.5	16	92	8	64	32	0	0	67	0.91
39229446--39229516	28	2.4	30	81	9	85	42	1	4	52	1.29
39230335--39230369	4	8.5	4	93	6	61	45	0	0	54	0.99
39230335--39230370	13	2.8	13	95	4	65	44	0	0	55	0.99
39230335--39230369	17	2.1	17	94	5	63	45	0	0	54	0.99
39230362--39230400	17	2.2	18	86	13	55	38	10	0	51	1.36
39231083--39231125	19	2.3	19	88	8	61	58	9	9	23	1.58
39233253--39233284	12	2.6	13	85	14	50	37	0	6	56	1.25
39235336--39235396	26	2.4	25	81	8	68	44	13	8	34	1.73
39241922--39242247	71	4.6	71	79	5	340	34	19	21	24	1.96
39241937--39242214	35	7.9	35	68	6	148	34	19	21	24	1.96
39241957--39242247	142	2.1	140	85	5	381	33	18	22	24	1.97
39242876--39242909	15	2.3	15	90	10	52	23	2	0	73	0.97
39251675--39251705	16	1.9	16	93	0	53	35	12	9	41	1.76
39252670--39252713	18	2.5	17	82	10	52	38	15	0	45	1.47
39260631--39260678	21	2.3	21	85	0	60	37	18	27	16	1.92
39261848--39261886	14	2.6	16	84	8	55	56	2	0	41	1.13
39268680--39268721	9	4.7	9	90	0	66	30	11	21	35	1.90
39269015--39269074	30	2.0	31	86	3	86	20	40	0	40	1.52
39269713--39269738	5	5.2	5	100	0	52	23	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39273613--39273642	9	3.3	9	95	0	51	13	0	26	60	1.34
39273759--39274201	127	3.5	124	87	2	602	29	16	24	29	1.97
39277212--39277585	114	3.3	114	97	0	694	41	7	9	40	1.66
39277585--39277863	21	13.0	21	81	6	319	24	0	31	43	1.57
39277615--39277711	28	3.2	28	65	23	70	22	0	35	42	1.54
39277588--39277863	43	6.5	42	82	7	306	25	0	31	43	1.58
39277585--39277863	64	4.4	65	80	5	327	24	0	31	43	1.57
39278403--39278445	18	2.4	18	84	0	59	46	9	27	16	1.77
39279093--39279118	7	3.7	7	100	0	52	57	15	0	26	1.38
39279287--39279324	20	1.9	20	84	10	51	55	7	2	34	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216