genome.fa.s15.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  196  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60953578--60953606	14	2.0	15	93	6	51	68	0	0	31	0.89
60968296--60968464	39	4.3	39	90	0	257	29	3	20	46	1.67
60970680--60970741	20	3.0	20	71	13	63	54	3	1	40	1.26
60990488--60990560	36	2.0	36	100	0	146	36	27	8	27	1.85
60996631--60996795	52	3.2	51	72	13	147	39	17	18	24	1.92
60996649--60996795	53	2.8	52	78	10	172	39	19	17	23	1.92
60996844--60996956	53	2.1	54	86	4	158	36	17	21	24	1.95
61004551--61004598	3	15.3	3	78	8	51	64	6	0	29	1.18
61004551--61004598	16	3.1	16	96	3	89	64	6	0	29	1.18
61005003--61005031	10	2.7	11	89	10	51	58	10	0	31	1.31
61005873--61006165	55	5.4	55	77	5	233	24	21	20	33	1.97
61018639--61018693	18	3.1	17	84	10	65	63	0	34	1	1.05
61018669--61018787	39	2.9	40	74	15	109	70	0	26	2	1.05
61018669--61018789	41	2.9	41	74	18	115	70	0	26	2	1.05
61018765--61018807	16	2.8	15	79	6	50	60	0	39	0	0.97
61018826--61018870	20	2.4	19	85	10	65	33	0	2	64	1.06
61018836--61018877	20	2.1	20	100	0	84	30	0	4	64	1.14
61022470--61022501	3	10.7	3	93	0	55	68	28	0	3	1.04
61022473--61022504	15	2.1	15	100	0	64	68	25	0	6	1.12
61022631--61022659	10	2.7	11	89	10	51	0	27	0	72	0.85
61022749--61022833	27	3.1	27	84	0	116	17	29	27	25	1.98
61022883--61022958	27	2.8	28	86	6	102	44	1	7	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61022946--61022979	16	2.1	17	88	5	52	29	0	2	67	1.05
61023769--61023811	22	1.9	22	90	4	68	53	0	2	44	1.13
61027295--61027359	27	2.4	26	80	10	76	33	24	21	20	1.97
61027300--61027352	27	1.9	27	88	3	79	33	26	22	16	1.96
61027572--61027746	32	5.5	32	84	2	154	40	19	19	21	1.92
61027572--61027738	64	2.6	64	85	1	219	40	19	19	20	1.92
61027918--61027999	24	3.5	23	78	5	83	45	25	8	20	1.80
61028039--61028216	27	6.6	27	79	3	180	28	19	15	37	1.92
61028034--61028204	54	3.2	54	83	0	225	28	19	17	35	1.94
61028046--61028216	81	2.1	81	81	4	202	27	19	15	37	1.92
61030140--61030187	25	1.9	25	87	8	71	25	22	20	31	1.98
61039308--61039345	18	2.1	18	95	0	67	0	55	0	44	0.99
61039405--61039454	25	2.0	25	88	0	73	4	30	4	62	1.32
61042650--61042702	15	3.2	15	80	17	52	54	1	1	41	1.22
61042733--61042771	20	2.0	20	94	0	69	48	0	2	48	1.15
61042870--61042909	20	2.0	20	90	0	62	50	12	10	27	1.72
61042858--61042924	34	1.9	35	90	3	109	46	13	8	31	1.74
61042893--61042932	14	2.9	14	84	0	53	42	17	7	32	1.77
61046974--61047024	18	2.8	18	71	14	50	41	1	1	54	1.22
61050765--61050789	12	2.1	12	100	0	50	24	0	8	68	1.16
61052622--61053052	109	4.0	109	91	0	643	31	16	17	35	1.92
61055670--61055694	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61057098--61057123	2	13.0	2	100	0	52	50	0	0	50	1.00
61068398--61068449	25	2.1	25	85	0	68	36	11	11	40	1.78
61076114--61076138	9	2.8	9	100	0	50	8	0	0	92	0.40
61078348--61078482	41	3.3	41	85	0	171	25	27	17	29	1.98
61078653--61078747	41	2.3	41	98	0	181	24	28	20	27	1.99
61078947--61078981	12	2.9	12	91	0	61	40	0	0	60	0.97
61080286--61080412	43	3.0	43	85	2	175	41	22	14	22	1.89
61083350--61083393	22	2.0	22	86	0	61	13	20	22	43	1.87
61083491--61083757	43	6.2	43	85	3	358	30	33	17	18	1.94
61087187--61087346	84	1.9	84	79	2	178	35	11	4	48	1.60
61087619--61087677	14	4.2	14	77	0	55	35	33	0	30	1.58
61087619--61087680	21	3.0	21	85	4	72	35	35	0	29	1.58
61087648--61087688	21	2.0	21	90	4	66	39	39	0	21	1.54
61087901--61087933	16	2.1	16	88	11	50	57	0	0	42	0.98
61087951--61087990	21	2.0	21	90	5	64	52	27	0	20	1.46
61087958--61088062	14	7.4	14	71	13	54	45	31	1	20	1.62
61087951--61088096	78	1.9	78	81	8	181	45	31	1	21	1.60
61088300--61088471	41	4.2	41	83	5	204	31	30	20	18	1.96
61088526--61088644	40	3.0	39	76	3	121	26	21	15	36	1.94
61088547--61088644	40	2.5	40	84	0	133	24	21	17	36	1.94
61088547--61088658	40	2.8	39	81	6	125	25	23	16	33	1.96
61090309--61090367	27	2.1	29	84	9	77	54	3	3	38	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61095572--61095597	11	2.4	11	100	0	52	38	7	0	53	1.30
61095594--61095664	11	6.8	11	73	23	55	33	1	1	63	1.12
61095564--61095713	42	3.6	41	78	13	153	37	2	0	60	1.13
61095572--61095691	51	2.3	53	91	4	190	37	2	0	59	1.17
61095665--61095714	11	4.3	12	75	14	52	40	0	0	60	0.97
61095673--61095721	22	2.2	21	82	10	62	34	0	4	61	1.15
61096067--61096123	27	2.1	28	90	3	89	42	3	1	52	1.28
61096123--61096171	8	5.9	8	86	9	53	87	4	6	2	0.72
61096123--61096173	14	3.7	13	80	19	59	88	3	5	1	0.69
61096214--61096280	27	2.5	27	97	0	125	25	29	31	13	1.94
61096327--61096503	18	10.0	17	71	18	89	66	0	32	0	1.01
61096329--61096400	10	6.6	10	73	17	54	68	0	31	0	0.90
61096329--61096430	24	4.3	23	71	11	73	66	0	33	0	0.92
61096332--61096405	14	5.1	13	71	25	51	68	0	31	0	0.89
61096347--61096505	38	4.3	38	81	10	170	67	0	31	0	1.00
61096332--61096411	34	2.8	28	75	24	85	67	0	32	0	0.91
61096349--61096448	10	10.4	10	72	16	77	66	0	33	1	0.99
61096688--61096805	59	2.0	59	100	0	236	42	5	18	33	1.72
61097244--61097295	19	2.7	19	88	5	70	25	0	5	69	1.10
61097333--61097398	27	2.5	27	95	2	116	43	10	0	45	1.38
61102136--61102171	18	2.0	18	88	0	54	16	44	5	33	1.71
61102908--61102936	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61103241--61103307	27	2.5	27	97	0	125	13	31	29	25	1.94
61103357--61103394	18	2.1	18	85	9	51	10	2	7	78	1.04
61103382--61103451	26	2.7	25	86	8	95	47	1	7	44	1.39
61108454--61108505	26	2.0	26	85	7	70	44	3	0	51	1.19
61108576--61108612	19	1.9	19	94	0	65	37	0	2	59	1.12
61115491--61115687	47	4.1	47	78	8	191	29	28	16	25	1.97
61115455--61115661	47	4.3	47	79	6	175	29	28	16	25	1.97
61122656--61122687	13	2.3	15	89	10	50	46	0	6	46	1.27
61125234--61125278	12	3.7	12	85	5	63	42	0	2	55	1.12
61125236--61125276	13	3.2	13	77	19	50	39	0	2	58	1.11
61126285--61126316	16	1.9	17	93	6	57	37	37	0	25	1.56
61126727--61126934	100	2.1	101	97	0	391	37	21	9	31	1.85
61129366--61129955	44	13.6	44	71	11	272	28	22	20	28	1.98
61129374--61129739	173	2.1	173	91	2	601	28	22	21	27	1.99
61129441--61129956	217	2.4	217	86	3	702	27	22	20	29	1.98
61129403--61129910	173	2.9	173	82	6	487	28	22	20	28	1.98
61141412--61141619	100	2.1	101	99	0	409	38	22	8	30	1.84
61143141--61143170	15	2.0	15	93	0	51	80	3	0	16	0.85
61145543--61145707	82	2.0	82	97	0	312	29	10	14	45	1.78
61146710--61146850	37	3.8	37	73	8	115	19	14	23	42	1.88
61147560--61147634	28	2.7	28	84	10	91	52	2	4	41	1.34
61149204--61149239	17	2.1	17	94	0	63	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61149383--61149424	23	1.9	23	85	9	61	57	0	0	42	0.99
61153596--61153693	48	2.0	48	98	0	187	32	15	10	41	1.80
61153974--61154469	54	9.2	54	77	4	403	28	17	13	39	1.88
61154904--61154941	17	2.4	16	82	8	51	65	0	13	21	1.26
61155450--61155483	5	6.6	5	86	6	50	38	2	20	38	1.68
61162697--61162760	25	2.6	25	84	0	83	23	29	17	29	1.97
61172053--61172085	7	4.6	7	96	3	57	66	3	0	30	1.06
61174484--61174552	31	2.2	31	84	5	86	42	7	15	34	1.75
61175087--61175130	21	2.1	21	82	0	52	31	11	9	47	1.71
61196163--61196232	3	23.3	3	100	0	140	67	0	32	0	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216