genome.fa.s15.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  171  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53772324--53772360	18	2.1	18	100	0	74	56	27	0	16	1.40
53772798--53772824	6	4.5	6	100	0	54	51	29	0	18	1.46
53775640--53775690	23	2.2	24	79	10	61	62	1	9	25	1.36
53792894--53792951	19	2.8	20	71	10	55	27	5	18	48	1.70
53805230--53805262	18	1.9	18	88	11	52	33	12	0	54	1.37
53807545--53807583	20	2.0	20	100	0	78	25	28	5	41	1.77
53808393--53808697	44	6.9	44	89	1	459	34	21	12	32	1.90
53808392--53808697	132	2.3	132	95	0	549	34	21	12	32	1.90
53809944--53810036	48	1.9	48	84	4	125	8	31	17	43	1.79
53812731--53812777	19	2.5	20	86	6	62	44	8	19	27	1.79
53822738--53822765	12	2.3	12	100	0	56	42	21	0	35	1.53
53824756--53824797	19	2.1	19	83	16	50	50	0	4	45	1.23
53825551--53825596	14	3.3	14	79	11	58	39	2	6	52	1.40
53828253--53828304	19	2.7	20	82	14	65	61	1	3	32	1.25
53828330--53828370	21	2.0	21	85	9	57	51	0	7	41	1.30
53831355--53831402	25	1.9	25	86	0	69	47	0	43	8	1.33
53831664--53831714	24	2.0	26	85	7	70	37	0	7	54	1.29
53832944--53833007	29	2.2	30	86	8	87	43	1	9	45	1.45
53834604--53834661	28	2.1	28	83	6	73	51	13	15	18	1.76
53836040--53836082	6	7.0	6	84	5	50	79	0	11	9	0.95
53840749--53840930	35	5.4	32	77	9	141	26	24	17	31	1.97
53840768--53840962	35	5.7	35	76	8	168	27	24	16	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53840807--53840997	101	1.9	101	91	0	310	26	23	17	32	1.96
53862705--53862840	67	2.0	67	97	0	254	28	22	13	34	1.93
53863334--53863402	34	2.0	34	97	0	129	43	5	15	34	1.71
53875881--53876109	124	1.8	124	85	3	318	29	25	17	27	1.98
53875766--53876247	262	1.8	262	83	4	641	29	23	18	28	1.98
53875980--53876298	138	2.3	138	81	1	379	29	25	18	26	1.98
53876407--53876513	17	6.3	17	80	0	124	35	11	14	38	1.82
53883102--53883152	24	2.0	25	88	7	77	29	7	19	43	1.79
53886317--53886349	16	2.1	16	94	0	57	33	0	36	30	1.58
53886328--53886418	45	2.0	44	85	2	119	32	5	27	34	1.80
53886331--53886437	44	2.6	39	76	15	115	35	4	28	31	1.78
53886595--53886775	61	3.0	61	71	12	192	50	5	0	43	1.29
53889213--53889681	250	1.9	251	95	3	843	36	19	15	28	1.92
53891135--53891228	43	2.2	43	94	0	161	48	17	6	27	1.71
53894336--53894476	24	5.7	26	71	8	98	16	24	22	36	1.94
53900976--53901025	21	2.5	20	83	3	64	24	20	12	44	1.85
53904153--53905059	210	4.3	210	80	4	862	26	19	23	30	1.98
53904146--53905071	70	13.2	69	77	4	728	26	18	23	30	1.98
53913411--53913467	21	2.8	20	89	7	80	21	22	19	36	1.95
53921659--53921687	2	14.5	2	100	0	58	48	51	0	0	1.00
53922654--53922724	33	2.2	33	84	0	88	36	9	12	40	1.77
53927539--53927568	6	5.0	6	100	0	60	50	0	16	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53930741--53930779	14	2.7	15	92	4	62	43	5	12	38	1.65
53932541--53932586	24	1.9	24	86	0	65	50	4	26	19	1.66
53937003--53937057	26	2.2	26	83	3	67	20	12	34	32	1.90
53936971--53937112	76	1.9	75	82	1	176	23	16	27	32	1.96
53938184--53938355	84	2.0	84	96	0	317	31	30	10	27	1.90
53942718--53942750	17	1.9	17	93	0	57	36	0	3	60	1.12
53944837--53945021	76	2.5	76	83	3	225	42	8	5	42	1.60
53946597--53946766	85	2.0	85	81	2	198	37	19	15	27	1.92
53950507--53950549	22	2.0	22	86	9	61	11	4	13	69	1.33
53950501--53950549	22	2.2	22	82	10	55	12	4	14	69	1.33
53955708--53955772	28	2.4	26	87	10	94	0	20	1	78	0.83
53955790--53955881	43	2.1	44	89	4	150	10	23	43	21	1.84
53955791--53955898	43	2.5	42	86	5	119	10	25	42	22	1.84
53955999--53956078	19	4.4	17	74	21	72	7	11	0	81	0.88
53956003--53956076	21	3.3	23	69	16	66	6	12	0	81	0.88
53956009--53956085	15	5.3	15	73	17	65	5	14	0	80	0.87
53956001--53956078	18	4.1	19	77	11	79	6	11	0	82	0.85
53956440--53956483	9	4.9	9	80	8	54	2	2	54	40	1.25
53956450--53956487	15	2.5	15	91	0	58	2	0	57	39	1.12
53956450--53956487	18	2.1	18	95	0	67	2	0	57	39	1.12
53956773--53956902	30	4.4	30	72	15	92	41	4	21	32	1.74
53956832--53956910	30	2.7	30	84	5	90	40	1	24	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53957197--53958055	77	11.3	73	87	5	1002	38	19	14	27	1.91
53957211--53958027	152	5.4	149	88	5	1104	36	20	14	27	1.92
53958903--53958950	12	3.5	14	80	11	55	4	12	4	79	1.02
53958929--53959009	7	10.9	7	84	10	90	0	2	13	83	0.73
53958930--53958999	11	6.3	11	85	3	95	0	1	14	84	0.70
53958918--53959009	23	3.8	23	78	17	80	0	5	11	82	0.82
53958909--53959010	15	6.8	15	75	14	68	0	5	11	81	0.91
53964558--53964838	17	15.6	18	70	19	117	42	11	10	35	1.75
53964558--53964597	19	2.2	18	86	4	53	40	7	7	45	1.61
53964633--53964704	20	3.8	18	84	12	99	34	11	12	41	1.78
53965312--53965377	28	2.4	26	87	9	96	0	19	1	78	0.82
53965395--53965486	43	2.1	44	89	4	150	10	23	43	21	1.84
53965396--53965501	43	2.5	42	82	11	117	10	25	41	22	1.85
53965613--53965661	22	2.2	22	92	7	82	4	14	0	81	0.83
53965605--53965661	11	5.2	11	79	8	62	5	12	0	82	0.82
53965755--53965806	21	2.5	21	84	9	63	0	34	0	65	0.93
53966023--53966053	15	2.1	15	93	0	53	0	6	58	35	1.24
53966376--53966488	30	3.8	29	77	11	113	38	6	23	31	1.79
53966312--53966486	29	5.9	30	71	15	114	39	6	22	30	1.80
53966371--53966486	59	1.9	59	81	8	137	39	6	23	31	1.79
53967156--53967190	17	2.1	17	100	0	70	0	11	17	71	1.14
53967230--53967270	21	2.0	21	95	0	73	4	21	51	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53967318--53967394	20	4.1	18	79	17	86	0	22	0	77	0.76
53967336--53967394	16	3.7	16	80	13	68	0	22	0	77	0.76
53967321--53967398	24	3.4	24	75	22	78	0	24	0	75	0.80
53967318--53967401	35	2.4	36	86	9	120	0	23	0	76	0.79
53967318--53967401	36	2.4	35	86	7	118	0	23	0	76	0.79
53967960--53968016	30	1.9	30	85	7	80	47	3	19	29	1.66
53980330--53981015	44	15.8	43	68	13	280	29	21	18	30	1.97
53980220--53980669	129	3.5	129	90	0	675	29	21	18	30	1.97
53980459--53981019	175	3.2	175	92	0	874	29	21	18	30	1.97
53980249--53981060	304	2.7	298	78	6	930	29	21	18	30	1.97
53982271--53982317	21	2.2	21	88	0	67	25	38	10	25	1.88
53983286--53983381	9	10.4	9	75	18	65	10	4	6	79	1.05
53983311--53983343	14	2.3	15	89	5	50	12	3	9	75	1.14
53983323--53983380	18	3.3	18	86	13	86	10	0	8	81	0.89
53983323--53983382	27	2.3	26	88	5	93	10	0	8	81	0.87
53985423--53985471	19	2.5	20	80	6	57	42	12	18	26	1.85
53993514--53993550	15	2.5	15	95	0	65	45	0	2	51	1.15
53993577--53993625	25	1.9	26	91	4	82	42	0	2	55	1.11
53996527--53996557	12	2.6	12	94	0	53	3	29	0	67	1.06
53997144--53997179	18	2.0	18	88	0	54	22	27	22	27	1.99
53999452--53999481	12	2.5	12	94	0	51	46	0	0	53	1.00
53999706--53999735	14	2.2	14	94	5	53	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53999755--53999953	94	2.1	94	83	7	238	48	4	2	44	1.36
54001267--54001311	23	2.0	23	95	0	81	51	2	0	46	1.13
54002321--54002742	43	9.8	44	85	4	438	22	28	23	25	1.99
54002321--54002742	129	3.3	129	83	3	512	22	28	23	25	1.99
54002313--54002786	86	5.5	85	83	5	421	23	28	22	26	1.99
54002871--54002900	14	2.1	14	100	0	60	53	33	0	13	1.40
54003109--54003166	21	2.8	21	83	0	71	5	44	17	32	1.70
54003154--54003314	87	1.9	87	93	2	279	13	28	17	40	1.87
54009247--54009284	14	2.7	14	100	0	76	44	0	5	50	1.24
54011562--54011606	23	2.0	23	82	8	56	40	31	6	22	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216