genome.fa.s15.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  134  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42617626--42617831	29	7.1	29	81	4	182	28	11	20	39	1.87
42617626--42617851	58	3.9	57	79	4	202	28	10	20	39	1.86
42617621--42617864	29	8.4	29	79	3	177	28	11	21	38	1.88
42617620--42617851	87	2.7	87	78	3	216	29	10	20	38	1.87
42625521--42625723	93	2.2	94	83	1	264	32	13	12	41	1.83
42625609--42626066	218	2.1	218	93	0	781	32	15	12	38	1.86
42625756--42625939	95	1.9	95	85	0	251	34	15	12	38	1.85
42626088--42626305	95	2.3	95	86	3	296	30	16	14	38	1.88
42634652--42634722	27	2.6	27	93	6	117	28	16	12	42	1.85
42648947--42649096	77	1.9	77	84	10	200	52	5	1	40	1.32
42651030--42651063	16	2.1	16	88	0	50	38	17	2	41	1.65
42651064--42651117	18	3.0	18	71	10	56	46	11	0	42	1.39
42652462--42652500	20	2.0	20	90	5	62	35	5	5	53	1.45
42653157--42653181	12	2.1	12	100	0	50	24	36	24	16	1.94
42653321--42653381	9	6.8	9	88	0	95	37	27	9	24	1.87
42653321--42653381	27	2.3	27	97	0	113	37	27	9	24	1.87
42653314--42653381	18	3.8	18	90	0	91	39	25	8	26	1.85
42653321--42653398	27	2.9	27	88	0	75	41	25	8	24	1.84
42653503--42653537	18	1.9	18	100	0	70	8	0	51	40	1.33
42653504--42653551	23	2.1	23	88	0	69	10	2	45	41	1.50
42660851--42660884	15	2.3	15	94	0	59	58	0	8	32	1.29
42669303--42669507	100	2.0	100	98	0	392	30	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42671330--42671399	31	2.2	32	82	7	90	28	8	18	44	1.79
42672677--42672788	40	2.8	41	87	4	167	40	22	18	18	1.92
42672676--42672800	40	3.2	39	78	8	137	40	22	16	20	1.92
42673487--42673538	23	2.3	23	79	0	59	26	30	7	34	1.85
42678467--42678506	20	2.0	20	95	0	71	32	25	12	30	1.92
42686605--42686905	133	2.3	133	80	2	327	29	19	22	27	1.98
42690223--42690406	43	4.3	43	84	0	226	19	18	33	28	1.96
42693349--42693485	42	3.3	42	80	0	157	41	18	22	17	1.90
42693377--42693507	21	6.3	21	68	4	68	39	16	23	19	1.92
42693570--42693641	24	3.0	24	84	8	92	23	23	4	48	1.68
42699587--42699633	14	3.0	16	81	15	53	76	0	23	0	0.78
42701010--42701048	18	2.2	18	85	0	51	48	10	7	33	1.66
42701142--42701195	18	2.9	19	83	10	67	53	9	0	37	1.33
42701159--42701195	19	2.0	18	89	5	56	56	10	0	32	1.34
42701330--42701362	16	2.0	17	88	5	50	33	3	12	51	1.54
42702002--42702054	16	3.3	16	76	10	63	35	24	5	33	1.79
42703214--42703288	4	17.0	4	76	17	53	0	21	5	73	1.03
42703201--42703254	25	2.2	25	86	0	72	0	27	1	70	0.98
42703215--42703288	9	8.2	9	74	16	73	0	20	5	74	1.01
42704293--42704342	25	2.0	25	88	7	75	44	0	6	50	1.26
42707074--42707111	20	1.9	20	88	0	58	42	0	13	44	1.43
42734579--42734630	16	3.2	16	84	7	70	30	0	34	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42734611--42734705	45	2.1	44	88	1	136	32	6	27	33	1.82
42734863--42734897	18	2.0	17	88	5	52	54	0	0	45	0.99
42734786--42735056	147	1.9	145	96	3	499	47	3	2	46	1.34
42734990--42735031	15	2.7	16	82	14	52	52	2	0	45	1.13
42734999--42735040	15	2.9	15	82	10	52	52	0	0	47	1.00
42734988--42735285	120	2.5	121	94	3	521	50	5	2	42	1.35
42735109--42735160	15	3.6	15	80	12	56	53	1	0	44	1.11
42735038--42735225	61	3.1	61	69	17	192	48	7	2	41	1.43
42735222--42735298	28	2.9	27	70	18	70	55	0	2	41	1.13
42735228--42735507	91	3.0	93	80	11	277	48	3	3	44	1.36
42735301--42735507	91	2.3	91	88	1	290	46	3	3	45	1.39
42735368--42735507	47	3.0	47	66	21	123	45	5	4	45	1.45
42739127--42739157	15	2.1	15	93	0	53	45	9	9	35	1.70
42749601--42749665	34	1.9	34	90	0	103	9	24	4	61	1.45
42749766--42749822	18	3.2	18	68	27	50	66	24	1	7	1.26
42749762--42749882	39	3.3	35	77	16	122	66	22	0	10	1.28
42749762--42749861	34	2.8	33	80	14	103	66	24	1	9	1.27
42749766--42749906	40	3.7	39	83	10	161	65	20	1	12	1.34
42754841--42754870	12	2.5	12	94	0	51	0	56	0	43	0.99
42762220--42762277	11	5.5	11	80	12	77	70	1	1	25	1.06
42762218--42762422	9	20.9	10	73	15	110	62	3	2	31	1.24
42762218--42762277	19	3.0	19	85	9	84	70	1	1	26	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42762220--42762281	31	2.0	30	90	9	99	67	1	1	29	1.09
42762222--42762391	10	17.4	9	73	14	65	64	4	2	28	1.24
42762976--42763067	29	3.2	28	77	18	91	34	1	1	63	1.09
42762861--42763061	19	10.4	19	69	15	85	33	2	3	59	1.31
42762977--42763074	27	3.6	27	78	10	99	33	1	2	63	1.13
42762984--42763065	9	9.0	9	78	12	87	34	1	1	63	1.10
42764371--42764453	40	2.1	40	100	0	166	39	14	27	18	1.89
42766907--42766971	29	2.2	29	88	0	94	20	23	12	44	1.84
42772224--42772287	24	2.7	24	80	0	74	23	37	21	17	1.94
42772747--42772775	14	2.1	14	100	0	58	31	0	13	55	1.39
42779167--42779214	20	2.4	20	79	6	53	41	0	0	58	0.98
42781962--42782052	29	3.2	29	78	6	123	31	9	14	43	1.78
42782773--42782871	17	5.8	17	65	9	58	26	17	19	37	1.93
42782754--42782834	34	2.4	34	85	0	99	29	18	17	34	1.94
42782778--42782865	34	2.6	33	85	7	106	26	17	19	37	1.93
42789041--42789098	28	2.1	27	84	12	75	58	0	1	39	1.08
42789209--42789238	6	5.0	6	100	0	60	66	0	0	33	0.92
42789227--42789291	29	2.2	30	81	15	82	50	3	0	46	1.17
42797557--42797691	51	2.7	51	97	1	254	28	25	17	28	1.98
42801420--42801541	49	2.6	47	86	2	163	27	14	26	31	1.95
42807924--42807972	25	2.0	25	83	0	62	38	0	16	44	1.48
42808362--42808447	43	2.0	43	95	0	154	50	2	24	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42808367--42808431	16	4.4	16	67	25	52	50	3	26	20	1.62
42809756--42809852	49	2.0	49	93	0	167	43	6	25	24	1.77
42818881--42818931	19	2.6	19	82	17	61	56	5	0	37	1.23
42828164--42828271	54	2.0	54	96	0	198	44	12	7	36	1.70
42830207--42830250	20	2.2	20	84	8	54	52	9	6	31	1.59
42830390--42830431	21	2.0	22	86	13	61	42	7	7	42	1.59
42836798--42836834	9	4.1	9	85	0	56	48	13	8	29	1.71
42837433--42837497	18	3.6	17	71	18	51	43	4	0	52	1.22
42845886--42845951	34	2.0	32	83	13	82	48	1	10	39	1.47
42848382--42848437	28	2.0	28	100	0	112	42	10	10	35	1.74
42858759--42858822	23	2.7	23	85	2	92	34	12	12	40	1.81
42862593--42862630	18	2.1	18	90	0	58	42	2	39	15	1.61
42866347--42866375	14	2.1	14	100	0	58	41	31	6	20	1.79
42870038--42870083	24	1.9	24	86	0	65	45	0	2	52	1.13
42880294--42880324	4	7.8	4	100	0	62	77	22	0	0	0.77
42882497--42882914	129	3.2	129	84	3	572	25	20	21	32	1.98
42882497--42882914	44	9.7	44	68	12	215	25	20	21	32	1.98
42882921--42883083	50	3.2	50	86	0	209	24	15	21	38	1.92
42883080--42883986	44	20.8	44	69	9	367	27	25	18	28	1.98
42883080--42883989	218	4.2	218	91	0	1446	27	25	18	28	1.98
42884812--42885876	354	3.0	354	99	0	2085	39	13	14	32	1.85
42886159--42886211	7	7.4	7	78	16	56	16	13	0	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42886159--42886208	14	3.5	14	83	5	64	16	12	0	72	1.13
42886168--42886208	8	5.5	8	80	16	52	14	9	0	75	1.04
42886161--42886218	15	3.8	15	79	9	64	15	12	0	72	1.12
42886159--42886211	21	2.5	21	87	3	79	16	13	0	69	1.18
42887095--42887163	6	11.7	6	81	3	68	13	7	10	69	1.36
42887093--42887166	35	2.1	35	85	5	96	12	6	9	71	1.30
42887100--42887163	23	2.7	24	82	4	85	14	6	10	68	1.37
42891311--42891340	4	7.5	4	92	0	51	76	20	0	3	0.92
42891281--42891345	12	5.2	12	74	7	58	67	12	6	13	1.40
42891536--42891566	13	2.4	13	94	0	53	74	0	3	22	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216