genome.fa.s15.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  21  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6417050--6417224	2	87.5	2	100	0	350	0	49	0	50	1.00
6432632--6432673	14	2.9	14	82	3	57	42	14	7	35	1.73
6433402--6433451	13	3.7	13	76	10	55	38	0	2	60	1.09
6436662--6436718	28	2.0	28	90	6	89	36	10	26	26	1.89
6437711--6437780	35	2.0	35	97	0	131	35	17	14	32	1.90
6439116--6439147	15	2.1	15	100	0	64	50	12	12	25	1.75
6439527--6439660	58	2.3	58	84	2	162	39	13	26	20	1.90
6440992--6441030	16	2.5	16	83	4	53	23	2	10	64	1.37
6442644--6442691	17	2.8	16	78	12	51	37	0	16	45	1.48
6443200--6443278	21	3.9	21	78	3	81	15	26	15	43	1.86
6451492--6451555	29	2.1	31	82	5	78	62	0	3	34	1.11
6452355--6452620	10	28.0	9	66	17	87	32	2	5	59	1.33
6452350--6452411	8	7.4	8	77	13	54	29	0	3	67	1.06
6452489--6452556	29	2.3	31	84	5	86	32	2	2	61	1.26
6454053--6454089	15	2.5	15	95	0	65	16	51	16	16	1.77
6459211--6459271	25	2.5	24	81	7	68	42	1	0	55	1.09
6464712--6464750	18	2.2	17	86	13	53	33	0	20	46	1.51
6464979--6465097	23	5.2	23	83	0	157	22	21	26	30	1.99
6464979--6465097	46	2.6	46	91	0	184	22	21	26	30	1.99
6482263--6482296	17	2.0	17	94	0	59	38	0	0	61	0.96
6482253--6482326	26	2.6	30	80	19	81	37	1	0	60	1.05
6482253--6482313	30	2.0	30	84	12	81	36	1	0	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6482288--6482343	26	2.2	26	83	0	67	28	1	5	64	1.26
6483864--6483926	31	2.0	32	96	3	119	6	15	19	58	1.58
6483906--6484079	91	1.9	91	85	4	244	36	18	9	34	1.84
6484177--6484244	19	3.6	19	78	5	75	64	1	4	29	1.21
6484485--6484553	36	1.9	36	85	2	95	33	1	2	62	1.19
6484546--6484643	9	10.3	10	68	20	50	34	1	0	64	1.01
6484544--6484641	18	5.4	17	73	17	63	32	1	0	66	0.99
6484569--6484626	17	3.2	17	81	13	71	32	1	0	65	1.03
6484544--6484627	19	4.6	18	80	12	82	32	1	0	66	0.99
6484549--6484642	10	9.9	10	69	18	67	32	1	0	65	0.99
6502652--6502720	30	2.3	30	87	5	95	52	17	8	21	1.71
6503611--6503644	3	11.3	3	100	0	68	0	32	0	67	0.91
6505930--6506004	30	2.5	29	79	10	80	46	4	14	34	1.63
6514414--6514454	21	2.0	21	85	9	57	36	4	7	51	1.51
6514770--6514809	20	2.1	19	86	13	55	50	2	0	47	1.14
6515210--6515238	9	3.3	9	95	4	51	20	0	0	79	0.74
6515211--6515251	17	2.4	17	87	0	55	29	0	2	68	1.03
6515235--6515328	11	9.4	11	73	23	66	38	1	1	59	1.11
6515227--6515288	28	2.2	26	83	13	70	35	0	1	62	1.05
6515218--6515328	39	2.8	39	90	1	168	36	0	0	62	1.08
6515211--6515320	8	14.0	8	66	17	52	36	0	0	61	1.08
6520888--6520936	21	2.3	21	85	3	62	34	2	4	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6520924--6520987	19	3.3	19	95	2	110	34	0	6	59	1.23
6520951--6521016	32	2.0	34	94	5	118	36	0	6	57	1.23
6520994--6521023	9	3.3	9	95	0	51	36	0	6	56	1.26
6520938--6521057	41	2.9	39	71	15	91	35	1	5	56	1.33
6525943--6525983	20	2.1	20	86	4	57	24	4	2	68	1.22
6526182--6526209	11	2.5	11	100	0	56	60	0	0	39	0.97
6531987--6532098	56	2.0	56	100	0	224	39	12	8	39	1.75
6533150--6533195	15	2.9	16	78	9	51	67	0	2	30	1.03
6533137--6533195	31	1.9	31	89	6	93	67	0	1	30	1.00
6534132--6534164	13	2.5	13	90	0	57	48	0	6	45	1.27
6534132--6534175	13	3.4	13	84	9	54	52	4	6	36	1.49
6537917--6537977	28	2.2	28	85	5	79	31	19	26	22	1.98
6547381--6547407	4	6.8	4	100	0	54	77	0	0	22	0.76
6549947--6549975	15	1.9	15	100	0	58	68	0	10	20	1.18
6554345--6554418	29	2.4	31	84	6	98	39	0	9	51	1.35
6566130--6566187	27	2.1	27	81	6	64	60	0	0	39	0.97
6566138--6566188	27	1.9	26	84	4	66	58	0	0	41	0.98
6571161--6571213	3	17.7	3	92	0	88	66	1	1	30	1.13
6572015--6572048	14	2.2	16	90	10	54	41	2	5	50	1.42
6576016--6576059	20	2.1	21	83	4	54	63	0	9	27	1.24
6578953--6579013	21	2.9	21	82	0	77	42	9	21	26	1.84
6579194--6579237	18	2.5	17	82	13	54	47	2	2	47	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6579194--6579243	19	2.7	18	81	9	57	46	2	4	48	1.32
6579227--6579269	20	2.2	20	87	4	61	27	0	9	62	1.25
6580909--6580946	11	3.5	11	79	13	51	60	0	2	36	1.11
6584694--6584737	24	1.9	24	86	9	65	61	4	4	29	1.36
6589659--6589710	27	1.9	27	88	7	79	26	34	11	26	1.91
6590411--6590440	15	2.1	15	93	6	53	23	13	0	63	1.29
6591323--6591510	94	2.0	94	100	0	376	40	5	9	44	1.60
6597987--6598116	19	6.9	18	69	15	68	63	1	2	32	1.16
6597973--6598115	9	15.4	9	68	17	71	65	1	2	31	1.13
6598008--6598127	20	6.2	20	68	13	58	65	2	1	30	1.16
6609256--6609282	2	13.5	2	100	0	54	0	0	48	51	1.00
6623758--6623810	21	2.4	23	81	6	56	32	3	3	60	1.32
6623870--6623909	7	5.9	7	83	16	57	47	15	0	37	1.45
6623866--6623920	20	2.7	20	83	8	67	45	18	1	34	1.60
6623870--6623910	13	3.1	13	80	19	57	46	17	0	36	1.48
6629598--6629700	36	2.9	36	71	11	86	39	11	28	20	1.87
6629921--6629960	19	2.0	20	85	4	55	42	10	20	27	1.83
6632967--6633023	20	2.9	19	79	7	60	52	0	0	47	1.00
6633560--6633607	24	2.0	24	87	0	69	56	4	8	31	1.48
6633701--6633757	29	1.9	30	86	10	82	40	8	7	43	1.63
6635758--6635786	3	10.0	3	92	7	51	68	0	0	31	0.89
6636349--6636391	9	4.8	9	94	0	68	23	9	27	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6636552--6636576	12	2.1	12	100	0	50	16	24	36	24	1.94
6641967--6642097	42	3.1	42	65	23	112	37	5	8	48	1.56
6641930--6642097	84	2.0	83	96	1	309	38	4	7	49	1.51
6642485--6642520	15	2.3	15	90	4	54	52	0	0	47	1.00
6645881--6646014	41	3.3	41	86	2	182	26	20	12	39	1.89
6651031--6651150	42	2.9	42	76	5	125	22	15	18	43	1.88
6651032--6651241	42	5.0	41	69	13	122	22	15	18	43	1.87
6651399--6651438	19	2.1	19	95	0	71	42	17	15	25	1.88
6670217--6670249	16	2.0	17	88	5	50	24	0	0	75	0.80
6670848--6670911	22	2.8	22	79	11	67	50	6	1	42	1.37
6670860--6670911	22	2.4	22	83	6	70	53	5	0	40	1.25
6672383--6672409	3	9.0	3	100	0	54	66	0	0	33	0.92
6681936--6682334	18	22.9	17	70	14	190	44	10	13	30	1.78
6681931--6682293	17	21.0	17	69	11	166	45	11	12	30	1.77
6681893--6682334	35	12.8	34	70	10	206	45	10	13	30	1.77
6682307--6682383	35	2.2	36	80	2	84	45	3	10	40	1.57
6682574--6682984	17	23.5	17	69	12	181	44	10	13	31	1.78
6682552--6682984	18	24.6	18	70	14	226	44	10	13	31	1.78
6682554--6682984	34	12.3	34	71	11	210	44	10	13	31	1.78
6682976--6683012	18	2.0	20	89	10	60	43	2	13	40	1.58
6682017--6683242	648	1.9	629	91	4	2001	41	12	12	33	1.81
6683620--6683670	8	6.1	8	77	8	57	1	15	0	82	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6683626--6683670	11	4.1	10	83	16	54	2	15	0	82	0.77
6683626--6683687	22	2.7	21	79	20	63	1	19	0	79	0.82
6683627--6683687	18	3.3	18	82	13	63	1	19	0	78	0.83
6683622--6683672	12	4.4	12	79	18	54	1	17	0	80	0.81
6683631--6683677	16	3.1	16	82	14	55	2	21	0	76	0.89
6683853--6683914	32	1.9	32	87	6	90	3	27	1	67	1.15
6684012--6684075	25	2.6	24	88	9	94	1	17	4	76	1.03
6684044--6684085	19	2.2	20	87	8	61	0	21	7	71	1.09
6684431--6684584	59	2.6	60	83	6	190	40	3	20	36	1.69
6684431--6684584	29	5.2	28	80	8	157	40	3	20	36	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216