genome.fa.s15.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  39  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037458--11037554	44	2.2	45	87	5	135	32	5	26	35	1.79
11037711--11037745	18	2.0	17	88	5	52	54	0	0	45	0.99
11037831--11037865	18	2.0	17	88	5	52	54	0	0	45	0.99
11037691--11038010	120	2.7	120	97	0	606	49	5	0	43	1.31
11037984--11038022	16	2.4	16	100	0	78	41	12	0	46	1.42
11041388--11041910	269	1.9	269	99	0	1037	35	19	16	28	1.93
11047279--11047339	27	2.3	27	79	0	68	27	29	6	36	1.82
11047460--11047515	28	2.0	28	82	0	67	32	25	10	32	1.90
11048883--11048967	44	1.9	44	85	4	118	40	5	7	47	1.55
11049736--11049768	11	3.0	11	90	0	57	33	0	9	57	1.30
11050126--11050196	3	24.0	3	94	2	126	66	0	32	1	1.01
11055877--11055936	28	2.1	28	87	6	84	58	0	0	41	0.98
11055876--11055981	30	3.6	30	75	15	87	61	0	3	34	1.14
11055938--11056031	21	4.6	19	72	18	66	62	2	7	27	1.33
11057002--11057417	125	3.3	125	84	3	604	29	18	21	31	1.97
11059909--11060024	45	2.6	45	91	2	189	50	12	0	35	1.47
11062276--11062373	51	1.9	51	83	8	128	46	3	22	27	1.66
11062335--11062399	22	2.9	23	81	6	80	43	1	29	26	1.64
11062337--11062399	11	5.6	11	81	7	65	42	1	30	25	1.64
11065879--11066063	94	2.0	94	96	0	343	31	16	14	37	1.89
11078201--11078248	18	2.6	19	80	6	53	45	0	0	54	0.99
11078869--11079105	122	2.0	121	85	4	325	35	8	5	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11091940--11092899	487	2.0	483	88	1	1438	36	8	16	38	1.80
11093507--11093556	20	2.5	20	90	0	73	8	22	20	50	1.74
11101782--11101862	41	2.0	41	87	4	119	38	0	6	55	1.25
11115370--11115447	30	2.6	28	84	9	93	14	19	33	33	1.91
11124712--11124764	24	2.2	24	83	6	63	50	13	3	32	1.59
11125426--11125541	40	2.8	40	82	10	137	35	25	18	19	1.95
11125374--11125526	81	1.9	81	81	9	186	32	24	20	22	1.98
11125385--11125543	41	3.9	41	78	8	155	32	26	20	20	1.98
11128721--11129059	169	2.0	169	97	0	633	30	14	26	29	1.95
11130590--11130707	46	2.6	45	90	4	184	27	22	16	33	1.95
11138650--11138678	5	5.8	5	100	0	58	0	17	0	82	0.66
11140899--11140959	21	2.9	21	92	0	104	16	31	18	34	1.93
11142031--11142542	251	2.0	251	95	1	929	28	6	22	42	1.79
11144524--11144563	20	2.0	20	90	0	62	50	12	10	27	1.72
11144512--11144578	34	1.9	35	87	3	100	46	11	8	32	1.72
11144692--11144753	30	2.0	31	84	9	83	53	8	4	33	1.52
11155059--11155217	46	3.5	46	79	1	167	26	20	18	33	1.96
11155101--11155244	46	3.1	46	77	4	146	29	22	17	30	1.97
11156553--11156592	15	2.7	15	96	0	71	42	5	40	12	1.64
11156964--11157016	20	2.6	19	80	11	61	39	9	3	47	1.54
11157299--11157387	40	2.2	40	82	4	99	40	15	2	41	1.60
11157481--11157556	20	3.8	20	78	3	91	38	15	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11157484--11157543	19	3.1	19	76	4	57	38	16	8	36	1.79
11157562--11157614	20	2.7	19	77	8	52	37	11	7	43	1.69
11157650--11157724	20	3.8	19	72	13	62	40	18	4	37	1.70
11157650--11157762	60	1.9	60	81	7	140	36	18	4	40	1.71
11157797--11158128	40	8.3	39	75	8	231	40	15	6	37	1.73
11157602--11157885	147	1.9	147	84	4	376	39	17	3	38	1.69
11157582--11157903	147	2.2	146	81	6	373	39	17	4	38	1.70
11157816--11158428	80	7.6	80	70	9	337	39	15	6	38	1.74
11157797--11158457	20	32.7	20	67	13	183	39	14	6	39	1.74
11158137--11158198	21	3.1	19	80	11	61	33	12	4	48	1.63
11160817--11160882	29	2.4	27	73	19	64	59	7	3	30	1.41
11162263--11162312	22	2.3	21	76	6	55	20	20	34	26	1.96
11165751--11165783	2	16.5	2	100	0	66	48	0	0	51	1.00
11166828--11166888	26	2.3	26	88	0	86	37	3	13	45	1.59
11169504--11169601	21	4.7	21	71	0	79	15	21	19	43	1.87
11169449--11169601	42	3.6	42	81	0	153	16	21	18	43	1.88
11175247--11175343	27	3.6	27	80	0	95	32	23	24	18	1.97
11176524--11176610	45	1.9	45	80	0	102	21	20	13	43	1.87
11183463--11183511	24	2.0	24	88	7	73	36	4	40	18	1.70
11183665--11183721	18	3.3	18	76	16	66	49	1	0	49	1.11
11183662--11183720	20	3.1	19	80	7	75	45	1	0	52	1.10
11183667--11183734	20	3.6	19	77	16	54	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11187486--11187579	40	2.4	40	80	5	113	27	21	19	31	1.97
11187749--11187785	9	4.2	9	89	3	58	48	10	0	40	1.38
11188498--11188548	21	2.5	21	83	3	59	0	23	1	74	0.92
11188509--11188571	12	4.8	12	76	21	56	0	19	6	74	1.02
11194103--11194132	3	10.0	3	100	0	60	33	33	0	33	1.58
11196136--11196161	12	2.2	12	100	0	52	42	34	23	0	1.54
11231059--11231102	18	2.5	17	82	17	54	56	4	2	36	1.32
11236429--11236458	11	2.6	11	94	5	51	36	3	0	60	1.14
11236411--11236485	38	2.0	39	89	5	118	33	1	0	65	1.01
11240231--11240337	20	5.3	20	63	0	61	31	18	28	20	1.96
11240073--11240355	120	2.4	120	86	2	372	30	17	29	22	1.97
11240068--11240355	40	7.2	40	84	0	306	30	17	28	23	1.97
11242492--11242524	16	2.1	16	94	0	57	6	33	0	60	1.21
11248374--11248453	31	2.6	31	91	0	133	35	15	7	42	1.75
11255237--11255290	16	3.4	16	89	0	81	29	0	35	35	1.58
11255504--11255545	15	2.7	16	82	14	52	52	2	0	45	1.13
11255513--11255554	15	2.9	15	82	10	52	52	0	0	47	1.00
11255502--11255770	120	2.2	121	92	3	447	50	4	2	42	1.36
11255620--11255665	16	2.9	16	78	12	51	52	2	0	45	1.13
11255620--11255674	15	3.7	15	79	13	53	52	1	0	45	1.11
11255552--11255739	61	3.1	61	69	14	181	49	6	2	42	1.40
11263575--11263778	46	4.5	46	93	1	333	33	16	23	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268325--11268585	46	5.7	46	94	1	456	28	21	15	34	1.94
11271974--11272020	18	2.6	18	80	12	60	25	2	4	68	1.19
11272105--11272134	2	15.0	2	100	0	60	50	0	0	50	1.00
11272820--11272879	31	1.9	31	89	0	93	51	6	16	25	1.68
11273208--11273236	3	9.7	3	100	0	58	31	0	0	68	0.89
11277564--11277592	3	9.7	3	100	0	58	31	0	0	68	0.89
11280543--11280604	23	2.5	25	80	15	67	45	8	19	27	1.78
11286305--11286348	17	2.6	17	96	0	79	9	38	31	20	1.84
11288404--11288568	44	3.8	43	75	4	143	24	24	21	29	1.99
11288814--11289232	87	4.8	87	92	0	703	25	24	22	28	1.99
11290824--11290875	27	1.9	27	84	7	70	3	25	0	71	1.03
11290860--11290935	6	12.7	6	81	10	75	13	5	11	69	1.34
11290866--11290935	13	5.8	13	76	15	62	12	4	12	70	1.32
11290872--11290935	19	3.5	19	89	6	89	12	3	14	70	1.29
11290886--11290920	7	5.3	7	93	6	56	14	0	14	71	1.15
11304072--11304105	13	2.6	13	85	0	50	76	2	0	20	0.92
11311859--11311897	20	2.0	19	85	5	51	35	0	2	61	1.10
11332373--11332443	28	2.5	28	93	4	115	35	1	0	63	1.03
11332382--11332501	37	3.0	38	86	12	152	37	0	0	60	1.08
11332373--11332509	37	4.2	33	78	14	124	35	0	0	62	1.06
11332412--11332469	11	5.9	11	76	19	58	41	0	0	58	0.98
11332458--11332522	32	2.0	32	85	5	87	33	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11332702--11332772	29	2.4	29	83	4	88	38	11	7	43	1.68
11335369--11335393	8	3.1	8	100	0	50	48	0	0	52	1.00
11362878--11362961	41	2.0	41	100	0	168	33	16	16	33	1.92
11365460--11365504	23	2.0	22	83	16	56	15	6	40	37	1.74
11365560--11365800	124	1.9	124	89	3	378	29	14	24	31	1.95
11367056--11367111	28	2.0	29	89	3	87	62	1	0	35	1.06
11367153--11367194	22	1.9	22	90	0	66	33	0	33	33	1.58
11367144--11367246	52	2.0	51	83	9	129	34	0	32	33	1.58
11367196--11367287	22	4.2	23	82	8	111	42	0	27	30	1.56
11367196--11367287	44	2.1	44	85	4	123	42	0	27	30	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216